Wall clock time and date at job start Tue Mar 31 2020 05:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00070 * 2 1 4 4 H 1.48497 * 109.46794 * 270.00201 * 3 2 1 5 5 H 1.48502 * 109.47140 * 30.00185 * 3 2 1 6 6 H 1.48501 * 109.46982 * 150.00298 * 3 2 1 7 7 C 1.37880 * 119.99711 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00461 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99611 * 179.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 S 1.81002 * 109.47004 * 180.02562 * 10 9 7 12 12 C 1.76193 * 100.00049 * 180.02562 * 11 10 9 13 13 N 1.31027 * 125.08228 * 0.02562 * 12 11 10 14 14 C 1.35951 * 109.63450 * 179.97438 * 13 12 11 15 15 C 1.39741 * 133.31965 * 179.97438 * 14 13 12 16 16 C 1.37847 * 119.78918 * 179.97438 * 15 14 13 17 17 F 1.35097 * 119.78344 * 180.02562 * 16 15 14 18 18 C 1.39065 * 120.42692 * 0.04715 * 16 15 14 19 19 F 1.35105 * 119.82149 * 179.97438 * 18 16 15 20 20 C 1.38116 * 120.36033 * 359.95586 * 18 16 15 21 21 C 1.38674 * 119.86499 * 0.02562 * 20 18 16 22 22 N 1.36659 * 125.07996 * 179.71925 * 12 11 10 23 23 H 0.97000 * 126.38295 * 0.02562 * 22 12 11 24 24 H 0.97000 * 119.99684 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 26 26 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 27 27 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 28 28 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 29 29 H 1.07995 * 120.09895 * 359.97438 * 15 14 13 30 30 H 1.07999 * 120.06527 * 180.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 16 5.8315 -2.6367 -0.0009 12 6 6.1374 -4.3718 -0.0016 13 7 5.2122 -5.2996 -0.0024 14 6 5.7963 -6.5273 -0.0033 15 6 5.2902 -7.8298 -0.0039 16 6 6.1573 -8.9014 -0.0053 17 9 5.6679 -10.1606 -0.0064 18 6 7.5325 -8.6947 -0.0050 19 9 8.3712 -9.7539 -0.0059 20 6 8.0456 -7.4124 -0.0044 21 6 7.1857 -6.3245 -0.0034 22 7 7.3751 -4.9511 -0.0072 23 1 8.2273 -4.4878 -0.0112 24 1 -0.4850 0.8401 0.0004 25 1 3.8751 -0.6805 0.8889 26 1 3.8745 -0.6801 -0.8910 27 1 3.6584 -3.1503 0.8892 28 1 3.6578 -3.1506 -0.8908 29 1 4.2232 -7.9962 -0.0033 30 1 9.1144 -7.2573 -0.0046 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044147953.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:25 Heat of formation + Delta-G solvation = -45.500888 kcal Electronic energy + Delta-G solvation = -18413.901973 eV Core-core repulsion = 14971.116290 eV Total energy + Delta-G solvation = -3442.785683 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.049 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.54784 -49.62398 -43.20027 -37.96207 -35.79517 -34.47471 -33.30185 -31.12408 -30.26741 -27.61275 -25.17296 -23.84346 -23.01582 -22.63135 -20.12038 -19.29910 -19.09781 -18.67489 -17.51971 -17.49668 -16.83764 -16.50135 -16.40249 -16.21949 -16.04916 -15.62980 -15.27354 -15.01133 -14.77613 -14.63717 -14.17990 -13.70767 -13.13051 -12.90208 -12.59542 -12.22144 -12.16678 -12.06625 -11.92127 -11.69615 -11.38713 -11.24394 -10.77826 -10.08901 -9.56361 -8.63293 -8.29431 -6.36450 -0.61359 -0.10843 -0.07790 0.98787 1.25102 1.40272 1.41939 1.53059 1.79738 2.29072 2.37095 2.67458 3.02625 3.05668 3.17765 3.67696 3.81176 4.02612 4.19092 4.20810 4.24210 4.50643 4.64211 4.73370 4.77102 5.07601 5.21042 5.28458 5.47878 5.55154 5.99594 6.22639 6.41525 6.70798 7.27750 8.86971 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.037443 B = 0.003206 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.633767 B = 8731.487097 C = 9458.674085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.264 1.264 5 H -0.285 1.285 6 H -0.239 1.239 7 C -0.532 4.532 8 H 0.035 0.965 9 C 0.004 3.996 10 C -0.069 4.069 11 S 0.020 5.980 12 C 0.275 3.725 13 N -0.523 5.523 14 C 0.052 3.948 15 C -0.081 4.081 16 C 0.063 3.937 17 F -0.131 7.131 18 C 0.079 3.921 19 F -0.125 7.125 20 C -0.091 4.091 21 C 0.069 3.931 22 N -0.562 5.562 23 H 0.448 0.552 24 H 0.268 0.732 25 H 0.037 0.963 26 H 0.035 0.965 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.157 0.843 30 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.692 -12.363 0.004 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.189 4.189 3 Si 0.772 3.228 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.162 1.162 7 C -0.572 4.572 8 H 0.053 0.947 9 C -0.035 4.035 10 C -0.218 4.218 11 S 0.254 5.746 12 C -0.100 4.100 13 N -0.248 5.248 14 C -0.070 4.070 15 C -0.102 4.102 16 C 0.041 3.959 17 F -0.110 7.110 18 C 0.057 3.943 19 F -0.103 7.103 20 C -0.113 4.113 21 C -0.044 4.044 22 N -0.178 5.178 23 H 0.292 0.708 24 H 0.077 0.923 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.174 0.826 30 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 21.440 -11.277 0.005 24.224 hybrid contribution -0.236 -0.840 -0.021 0.873 sum 21.203 -12.117 -0.016 24.421 Atomic orbital electron populations 1.70057 1.08439 1.28411 1.51904 1.25988 0.95602 1.03559 0.93760 0.85675 0.79749 0.77933 0.79473 1.18879 1.21073 1.16230 1.21222 0.90961 0.93501 1.51492 0.94699 1.19300 0.94658 0.91261 0.98284 1.23421 0.89986 1.02485 1.05882 1.85375 1.09895 0.88244 1.91112 1.25754 0.82936 1.01004 1.00275 1.71104 1.30850 0.97804 1.25060 1.18986 0.90529 0.92447 1.04998 1.20026 1.01229 0.87640 1.01301 1.17131 0.90394 0.79819 1.08559 1.91524 1.88234 1.36889 1.94325 1.17026 0.85364 0.84439 1.07472 1.91543 1.70204 1.54460 1.94131 1.19755 1.01579 0.86399 1.03534 1.18547 0.95130 0.84674 1.06083 1.42803 1.08781 1.03708 1.62505 0.70786 0.92282 0.94518 0.94652 0.90008 0.90001 0.82580 0.79707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.27 13.96 21.45 0.30 -57.97 16 2 C 0.01 0.49 5.47 84.66 0.46 0.95 16 3 Si 0.95 41.83 27.47 68.60 1.88 43.72 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.24 -9.50 6.54 99.48 0.65 -8.85 16 7 C -0.53 -29.62 9.66 25.60 0.25 -29.38 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.14 16 9 C 0.00 0.19 4.04 29.85 0.12 0.31 16 10 C -0.07 -2.58 5.09 71.98 0.37 -2.21 16 11 S 0.02 0.56 22.31 -56.49 -1.26 -0.70 16 12 C 0.28 7.40 8.20 179.59 1.47 8.87 16 13 N -0.52 -16.68 10.57 -188.38 -1.99 -18.67 16 14 C 0.05 1.40 7.22 39.40 0.28 1.68 16 15 C -0.08 -1.95 10.07 22.54 0.23 -1.72 16 16 C 0.06 1.40 7.29 22.38 0.16 1.57 16 17 F -0.13 -3.07 17.16 44.97 0.77 -2.30 16 18 C 0.08 1.51 7.30 22.44 0.16 1.68 16 19 F -0.12 -2.42 17.17 44.97 0.77 -1.64 16 20 C -0.09 -1.40 10.03 22.35 0.22 -1.18 16 21 C 0.07 1.42 7.29 38.70 0.28 1.70 16 22 N -0.56 -10.58 6.28 -187.31 -1.18 -11.76 16 23 H 0.45 4.77 8.96 -92.71 -0.83 3.94 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 26 H 0.04 1.46 7.57 -2.39 -0.02 1.44 16 27 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 29 H 0.16 3.58 8.06 -2.91 -0.02 3.56 16 30 H 0.19 1.43 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -66.73 289.77 3.63 -63.10 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 0.32 Total: 3.95 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 4.02 Total: -17.73 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -2.87 Total: -88.40 kcal Atomic # 9 Polarization: -5.48 SS G_CDS: 1.54 Total: -3.94 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.88 Total: 43.72 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -1.26 Total: -0.70 kcal Total: -66.73 3.63 -63.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044147953.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.597 kcal (2) G-P(sol) polarization free energy of solvation -66.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds