Wall clock time and date at job start Tue Mar 31 2020 05:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31597 * 122.23319 * 2 1 4 4 C 1.29947 * 117.13389 * 180.25496 * 3 2 1 5 5 N 1.38892 * 125.35811 * 179.76996 * 4 3 2 6 6 C 1.34777 * 119.99668 * 179.43947 * 5 4 3 7 7 O 1.21293 * 120.00229 * 0.28097 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27660 * 6 5 4 9 9 C 1.52994 * 117.49943 * 248.75083 * 8 6 5 10 10 C 1.52991 * 117.50225 * 180.09120 * 8 6 5 11 11 S 1.76134 * 109.27204 * 359.50610 * 4 3 2 12 12 C 1.34660 * 122.22801 * 179.71059 * 2 1 3 13 13 S 1.76199 * 125.93162 * 0.02562 * 12 2 1 14 14 C 1.76199 * 100.00138 * 180.02562 * 13 12 2 15 15 H 1.08001 * 119.99972 * 359.97438 * 14 13 12 16 16 C 1.38427 * 120.00114 * 180.02562 * 14 13 12 17 17 N 1.31814 * 120.00009 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00154 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46816 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47513 * 119.99777 * 18 16 14 21 21 H 1.48499 * 109.46946 * 239.99806 * 18 16 14 22 22 H 1.09001 * 109.46914 * 270.29298 * 1 2 3 23 23 H 1.09003 * 109.46968 * 30.28817 * 1 2 3 24 24 H 1.08996 * 109.47512 * 150.28459 * 1 2 3 25 25 H 0.97001 * 120.00544 * 359.72327 * 5 4 3 26 26 H 1.09000 * 115.54637 * 34.42075 * 8 6 5 27 27 H 1.09005 * 117.50098 * 359.97438 * 9 8 6 28 28 H 1.09004 * 117.49838 * 145.01994 * 9 8 6 29 29 H 1.08998 * 117.50043 * 214.98404 * 10 8 6 30 30 H 1.09006 * 117.50115 * 359.97334 * 10 8 6 31 31 H 0.96998 * 120.00356 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2089 1.1132 0.0000 4 6 3.5032 0.9977 -0.0051 5 7 4.4044 2.0545 -0.0106 6 6 5.7298 1.8098 -0.0042 7 8 6.1355 0.6668 0.0011 8 6 6.7077 2.9565 -0.0038 9 6 7.5457 3.1707 -1.2658 10 6 8.1987 2.6134 0.0014 11 16 3.9345 -0.7100 0.0035 12 6 2.2251 -1.1391 0.0058 13 16 1.5696 -2.7746 0.0134 14 6 3.0664 -3.7042 0.0192 15 1 4.0186 -3.1945 0.0170 16 6 3.0220 -5.0877 0.0255 17 7 1.8599 -5.7098 0.0277 18 14 4.6088 -6.0732 0.0324 19 1 5.7679 -5.1449 0.0292 20 1 4.6583 -6.9234 1.2489 21 1 4.6617 -6.9346 -1.1760 22 1 -0.3633 0.0053 1.0277 23 1 -0.3633 0.8874 -0.5183 24 1 -0.3634 -0.8925 -0.5094 25 1 4.0800 2.9686 -0.0148 26 1 6.3932 3.8423 0.5479 27 1 7.3900 2.4820 -2.0963 28 1 7.7828 4.1976 -1.5442 29 1 8.8651 3.2737 0.5563 30 1 8.4724 1.5582 0.0050 31 1 1.8286 -6.6793 0.0317 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044789141.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:36 Heat of formation + Delta-G solvation = 23.170847 kcal Electronic energy + Delta-G solvation = -17067.104701 eV Core-core repulsion = 14181.137235 eV Total energy + Delta-G solvation = -2885.967466 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.039 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.30105 -38.60584 -36.46833 -34.69437 -32.81328 -30.53547 -27.13187 -25.81828 -25.61604 -22.74188 -22.47733 -20.88192 -19.46481 -18.10654 -17.72229 -16.98649 -15.81817 -15.57433 -15.12086 -15.09272 -14.73077 -14.02964 -13.84408 -13.18887 -12.85531 -12.67596 -12.11372 -11.88062 -11.80607 -11.36357 -11.27521 -11.08047 -10.93285 -10.83395 -10.72990 -10.56131 -10.23921 -9.85570 -9.53060 -9.05930 -8.73949 -8.64310 -7.79169 -6.59453 -6.49140 -4.26986 1.38297 1.89822 2.35857 2.54967 2.87218 3.09020 3.09471 3.18847 3.37431 3.49806 3.71390 3.98736 4.43449 4.52889 4.60566 4.83198 4.86312 5.04681 5.24114 5.33155 5.47252 5.68583 5.88711 5.98915 6.16432 6.24159 6.46603 6.50836 6.98433 7.20690 7.34268 8.00991 8.05496 8.52920 8.89348 10.46430 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.017428 B = 0.005556 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.178664 B = 5038.489321 C = 6558.153307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.476 5.476 4 C 0.187 3.813 5 N -0.611 5.611 6 C 0.533 3.467 7 O -0.506 6.506 8 C -0.188 4.188 9 C -0.151 4.151 10 C -0.145 4.145 11 S 0.200 5.800 12 C -0.251 4.251 13 S 0.148 5.852 14 C -0.555 4.555 15 H 0.089 0.911 16 C 0.082 3.918 17 N -0.863 5.863 18 Si 0.924 3.076 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.275 1.275 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.071 0.929 25 H 0.415 0.585 26 H 0.129 0.871 27 H 0.102 0.898 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.111 0.889 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.957 15.476 -0.655 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.197 5.197 4 C -0.184 4.184 5 N -0.260 5.260 6 C 0.319 3.681 7 O -0.380 6.380 8 C -0.209 4.209 9 C -0.189 4.189 10 C -0.182 4.182 11 S 0.444 5.556 12 C -0.488 4.488 13 S 0.398 5.602 14 C -0.704 4.704 15 H 0.107 0.893 16 C -0.129 4.129 17 N -0.496 5.496 18 Si 0.749 3.251 19 H -0.188 1.188 20 H -0.200 1.200 21 H -0.200 1.200 22 H 0.081 0.919 23 H 0.081 0.919 24 H 0.090 0.910 25 H 0.252 0.748 26 H 0.146 0.854 27 H 0.120 0.880 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.129 0.871 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.730 13.846 -0.640 15.408 hybrid contribution 1.021 0.482 0.076 1.132 sum 7.751 14.328 -0.563 16.300 Atomic orbital electron populations 1.20116 0.88041 1.02112 1.01786 1.19042 0.96708 0.84593 1.12013 1.65818 1.02827 1.32396 1.18670 1.23796 0.89889 0.92948 1.11734 1.42320 1.04311 1.08068 1.71280 1.19882 0.81510 0.90302 0.76393 1.90702 1.77104 1.22327 1.47912 1.22020 0.93204 0.99309 1.06405 1.23009 1.01280 1.03131 0.91472 1.23013 0.91442 1.03691 1.00056 1.85848 1.01759 0.95456 1.72568 1.28771 1.01293 1.06731 1.12023 1.83064 1.11052 0.84413 1.81629 1.23307 0.93606 0.94045 1.59469 0.89289 1.25027 0.98270 0.96671 0.92939 1.70023 1.24359 1.10245 1.45009 0.85988 0.81356 0.79447 0.78329 1.18790 1.19985 1.19997 0.91878 0.91940 0.91034 0.74772 0.85360 0.87968 0.87536 0.87671 0.87078 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.08 10.02 36.00 0.36 -0.72 16 2 C 0.02 0.40 6.73 -83.96 -0.57 -0.16 16 3 N -0.48 -9.69 10.55 -9.78 -0.10 -9.80 16 4 C 0.19 3.66 8.40 -87.19 -0.73 2.93 16 5 N -0.61 -9.08 5.40 -11.78 -0.06 -9.15 16 6 C 0.53 7.72 7.57 -10.98 -0.08 7.64 16 7 O -0.51 -9.40 13.78 5.55 0.08 -9.32 16 8 C -0.19 -1.78 6.19 -91.78 -0.57 -2.34 16 9 C -0.15 -1.21 10.24 -26.70 -0.27 -1.48 16 10 C -0.14 -1.26 10.05 -26.70 -0.27 -1.53 16 11 S 0.20 4.49 18.35 -107.50 -1.97 2.51 16 12 C -0.25 -5.89 6.67 29.47 0.20 -5.69 16 13 S 0.15 3.76 20.74 -107.50 -2.23 1.53 16 14 C -0.56 -15.28 9.26 30.80 0.29 -15.00 16 15 H 0.09 2.44 5.97 -52.49 -0.31 2.13 16 16 C 0.08 2.20 5.49 -17.49 -0.10 2.11 16 17 N -0.86 -23.92 13.22 55.47 0.73 -23.19 16 18 Si 0.92 20.83 29.55 -169.99 -5.02 15.81 16 19 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.07 1.26 7.37 -51.93 -0.38 0.88 16 25 H 0.41 4.65 8.82 -40.82 -0.36 4.29 16 26 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.11 1.19 7.67 -51.93 -0.40 0.79 16 31 H 0.28 7.08 8.32 -40.82 -0.34 6.74 16 LS Contribution 300.54 15.07 4.53 4.53 Total: -1.00 -31.84 300.54 -8.92 -40.76 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -3.13 Total: 0.56 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: -1.74 Total: -14.24 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.57 Total: -42.13 kcal Atomic # 8 Polarization: -9.40 SS G_CDS: 0.08 Total: -9.32 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 8.24 SS G_CDS: -4.20 Total: 4.04 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.84 -8.92 -40.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044789141.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.932 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds