Wall clock time and date at job start Tue Mar 31 2020 05:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.33329 * 119.99803 * 2 1 4 4 H 1.08002 * 119.99829 * 173.81956 * 3 2 1 5 5 C 1.46779 * 119.99975 * 353.81326 * 3 2 1 6 6 N 1.29316 * 120.00343 * 5.30532 * 5 3 2 7 7 Si 1.86799 * 120.00074 * 185.30984 * 5 3 2 8 8 H 1.48497 * 109.47290 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47326 * 120.00031 * 7 5 3 10 10 H 1.48501 * 109.47499 * 239.99928 * 7 5 3 11 11 C 1.34775 * 120.00038 * 179.97438 * 2 1 3 12 12 O 1.21483 * 119.99602 * 184.77424 * 11 2 1 13 13 C 1.47622 * 120.00250 * 4.78085 * 11 2 1 14 14 C 1.39733 * 120.13877 * 298.42073 * 13 11 2 15 15 C 1.37834 * 119.86215 * 180.23182 * 14 13 11 16 16 C 1.38565 * 120.13780 * 359.51474 * 15 14 13 17 17 Cl 1.73600 * 119.85947 * 180.25465 * 16 15 14 18 18 C 1.38519 * 120.28032 * 0.27766 * 16 15 14 19 19 C 1.37881 * 120.13951 * 359.95892 * 18 16 15 20 20 N 1.48015 * 120.07058 * 180.02562 * 19 18 16 21 21 O 1.31707 * 120.00048 * 353.98607 * 20 19 18 22 22 O 1.31697 * 120.00071 * 173.98493 * 20 19 18 23 23 H 1.08997 * 109.46825 * 182.76900 * 1 2 3 24 24 H 1.09000 * 109.47012 * 302.76582 * 1 2 3 25 25 H 1.08997 * 109.47424 * 62.77011 * 1 2 3 26 26 H 0.96995 * 120.00536 * 179.97438 * 6 5 3 27 27 H 1.08001 * 120.06673 * 0.02562 * 14 13 11 28 28 H 1.07997 * 119.93602 * 179.79194 * 15 14 13 29 29 H 1.08001 * 119.92627 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1316 1.1547 0.0000 4 1 3.2069 1.1574 0.1007 5 6 1.4041 2.4221 -0.1370 6 7 0.1110 2.4269 -0.1545 7 14 2.3459 4.0283 -0.2862 8 1 3.8044 3.7531 -0.2401 9 1 2.0069 4.6831 -1.5752 10 1 1.9753 4.9258 0.8374 11 6 2.1389 -1.1672 0.0005 12 8 3.3505 -1.1689 0.0881 13 6 1.4047 -2.4435 -0.1055 14 6 0.4818 -2.8058 0.8792 15 6 -0.1970 -4.0011 0.7770 16 6 0.0267 -4.8380 -0.3044 17 17 -0.8371 -6.3386 -0.4293 18 6 0.9371 -4.4826 -1.2861 19 6 1.6261 -3.2919 -1.1929 20 7 2.5981 -2.9133 -2.2430 21 8 2.8938 -3.7639 -3.2041 22 8 3.1672 -1.7259 -2.2164 23 1 -0.3633 -1.0264 0.0496 24 1 -0.3633 0.5562 0.8642 25 1 -0.3634 0.4702 -0.9137 26 1 -0.3698 3.2644 -0.2446 27 1 0.3032 -2.1523 1.7202 28 1 -0.9081 -4.2839 1.5391 29 1 1.1073 -5.1394 -2.1263 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049062.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:02 Heat of formation + Delta-G solvation = 39.882238 kcal Electronic energy + Delta-G solvation = -20134.415154 eV Core-core repulsion = 16668.542676 eV Total energy + Delta-G solvation = -3465.872478 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.12266 -38.31009 -37.35283 -36.33238 -35.25866 -33.20566 -32.74935 -31.35793 -30.88722 -27.00885 -26.08327 -25.03417 -23.05592 -21.95037 -20.02840 -18.08489 -17.56732 -17.05552 -16.88081 -15.73838 -15.31168 -15.20420 -14.99708 -14.52217 -14.19505 -13.99758 -13.46545 -13.25203 -12.64199 -12.29250 -12.03172 -11.72570 -11.59850 -11.47464 -11.29126 -11.07086 -10.83062 -10.72231 -10.18894 -9.93852 -9.74701 -9.61141 -9.23965 -8.88450 -8.71515 -8.54434 -7.31272 -3.93231 -0.23632 0.94669 1.64737 1.86284 2.33043 2.70001 2.83589 2.90868 3.26347 3.51423 3.68515 4.20971 4.42988 4.74840 4.89890 5.08002 5.20066 5.30851 5.63924 5.84237 5.94661 6.06077 6.19820 6.34401 6.42388 6.49045 6.78803 6.90671 7.27098 7.62614 7.90491 8.42409 8.65458 9.47825 9.63109 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.024039 B = 0.005386 C = 0.004706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.490355 B = 5197.000215 C = 5948.719806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.381 5.381 3 C -0.230 4.230 4 H 0.135 0.865 5 C 0.026 3.974 6 N -0.784 5.784 7 Si 0.949 3.051 8 H -0.251 1.251 9 H -0.268 1.268 10 H -0.269 1.269 11 C 0.433 3.567 12 O -0.555 6.555 13 C -0.046 4.046 14 C -0.085 4.085 15 C -0.087 4.087 16 C -0.055 4.055 17 Cl -0.064 7.064 18 C -0.049 4.049 19 C 0.020 3.980 20 N -0.010 5.010 21 O -0.296 6.296 22 O -0.160 6.160 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.294 0.706 27 H 0.149 0.851 28 H 0.144 0.856 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.764 -4.186 4.139 9.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.092 5.092 3 C -0.364 4.364 4 H 0.152 0.848 5 C -0.192 4.192 6 N -0.417 5.417 7 Si 0.771 3.229 8 H -0.174 1.174 9 H -0.193 1.193 10 H -0.195 1.195 11 C 0.228 3.772 12 O -0.440 6.440 13 C -0.055 4.055 14 C -0.105 4.105 15 C -0.108 4.108 16 C -0.084 4.084 17 Cl -0.036 7.036 18 C -0.069 4.069 19 C -0.074 4.074 20 N 0.428 4.572 21 O -0.447 6.447 22 O -0.343 6.343 23 H 0.065 0.935 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.166 0.834 28 H 0.161 0.839 29 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -7.693 -4.503 4.318 9.905 hybrid contribution 0.185 0.563 -0.513 0.784 sum -7.508 -3.941 3.805 9.294 Atomic orbital electron populations 1.22320 0.79540 0.99246 1.05054 1.43324 1.07149 1.05669 1.53024 1.21812 0.95355 0.81595 1.37669 0.84761 1.27431 0.95556 1.01505 0.94725 1.69170 1.08348 1.30913 1.33314 0.85444 0.80867 0.77605 0.78936 1.17425 1.19268 1.19455 1.17167 0.87393 0.82244 0.90429 1.90659 1.12716 1.85203 1.55387 1.19830 0.96401 0.96184 0.93073 1.21195 0.94645 0.96345 0.98320 1.21078 0.99485 0.93379 0.96810 1.20431 0.99487 0.90570 0.97863 1.98357 1.75559 1.31606 1.98030 1.20550 0.93005 0.94464 0.98900 1.19736 0.98498 0.98339 0.90788 1.49778 1.02185 1.02754 1.02449 1.96134 1.72276 1.46730 1.29566 1.96315 1.52527 1.02454 1.83013 0.93474 0.89911 0.90323 0.89310 0.83369 0.83870 0.82957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.56 8.45 59.85 0.51 2.07 15 2 N -0.38 -8.70 2.93 -121.79 -0.36 -9.06 15 3 C -0.23 -5.41 9.77 -13.45 -0.13 -5.54 15 4 H 0.13 3.35 7.21 -52.49 -0.38 2.97 15 5 C 0.03 0.53 5.63 -15.16 -0.09 0.45 15 6 N -0.78 -15.76 9.55 56.00 0.53 -15.23 15 7 Si 0.95 16.35 29.65 -169.99 -5.04 11.31 15 8 H -0.25 -4.48 7.11 56.52 0.40 -4.08 15 9 H -0.27 -4.61 7.11 56.52 0.40 -4.20 15 10 H -0.27 -4.47 7.11 56.52 0.40 -4.06 15 11 C 0.43 10.45 5.31 -12.43 -0.07 10.38 15 12 O -0.56 -15.53 14.72 -18.03 -0.27 -15.80 15 13 C -0.05 -0.94 4.71 -104.97 -0.49 -1.44 15 14 C -0.09 -1.32 7.52 -39.17 -0.29 -1.62 15 15 C -0.09 -1.14 9.81 -39.61 -0.39 -1.53 15 16 C -0.05 -0.78 6.33 -39.36 -0.25 -1.03 15 17 Cl -0.06 -0.78 28.95 -51.86 -1.50 -2.28 15 18 C -0.05 -0.85 9.35 -39.61 -0.37 -1.22 15 19 C 0.02 0.43 6.90 -79.54 -0.55 -0.12 15 20 N -0.01 -0.25 4.98 34.16 0.17 -0.08 15 21 O -0.30 -7.36 19.17 -31.57 -0.61 -7.97 15 22 O -0.16 -4.46 15.85 -39.62 -0.63 -5.08 15 23 H 0.05 0.79 4.61 -51.93 -0.24 0.55 15 24 H 0.08 1.54 7.13 -51.93 -0.37 1.17 15 25 H 0.08 1.60 7.01 -51.93 -0.36 1.23 15 26 H 0.29 5.31 8.26 -40.82 -0.34 4.98 15 27 H 0.15 1.98 7.84 -52.49 -0.41 1.57 15 28 H 0.14 1.37 8.06 -52.49 -0.42 0.95 15 29 H 0.15 2.50 7.59 -52.49 -0.40 2.10 15 LS Contribution 278.59 15.07 4.20 4.20 Total: -1.00 -29.08 278.59 -7.33 -36.42 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -1.72 Total: 3.17 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: -2.12 Total: 0.41 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.35 Total: -24.37 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -1.50 Total: -28.85 kcal Atomic # 14 Polarization: 16.35 SS G_CDS: -5.04 Total: 11.31 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.08 -7.33 -36.42 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049062.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.297 kcal (2) G-P(sol) polarization free energy of solvation -29.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds