Wall clock time and date at job start Tue Mar 31 2020 05:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38406 * 119.84215 * 2 1 4 4 C 1.37907 * 120.15269 * 179.97438 * 3 2 1 5 5 C 1.39681 * 119.84749 * 0.02562 * 4 3 2 6 6 C 1.47662 * 120.15431 * 180.02562 * 5 4 3 7 7 O 1.21515 * 119.99790 * 180.02562 * 6 5 4 8 8 O 1.34724 * 120.00284 * 359.97438 * 6 5 4 9 9 C 1.34854 * 117.00571 * 180.02562 * 8 6 5 10 10 H 1.08000 * 119.99680 * 359.97438 * 9 8 6 11 11 C 1.38816 * 120.00172 * 180.02562 * 9 8 6 12 12 N 1.31414 * 119.99631 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00054 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47180 * 90.00633 * 13 11 9 15 15 H 1.48499 * 109.47133 * 210.00524 * 13 11 9 16 16 H 1.48504 * 109.47246 * 330.00602 * 13 11 9 17 17 C 1.39652 * 119.68997 * 359.72886 * 5 4 3 18 18 C 1.37953 * 119.84635 * 0.52002 * 17 5 4 19 19 S 1.76195 * 119.92307 * 179.77337 * 18 17 5 20 20 C 1.81404 * 104.44854 * 114.72707 * 19 18 17 21 21 O 1.42104 * 104.27948 * 358.65571 * 19 18 17 22 22 O 1.42100 * 104.27787 * 230.79477 * 19 18 17 23 23 H 1.08999 * 109.47070 * 270.02145 * 1 2 3 24 24 H 1.09000 * 109.47719 * 30.02349 * 1 2 3 25 25 H 1.09004 * 109.46646 * 150.02158 * 1 2 3 26 26 H 1.08002 * 119.91990 * 0.02562 * 3 2 1 27 27 H 1.08000 * 120.07266 * 180.02562 * 4 3 2 28 28 H 0.96994 * 119.99709 * 179.97438 * 12 11 9 29 29 H 1.08007 * 120.07443 * 180.29251 * 17 5 4 30 30 H 1.09002 * 109.47124 * 291.62270 * 20 19 18 31 31 H 1.09001 * 109.46975 * 171.62391 * 20 19 18 32 32 H 1.09004 * 109.47147 * 51.62354 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2005 0.0000 4 6 3.5748 1.2080 0.0005 5 6 4.2765 0.0003 0.0005 6 6 5.7531 0.0004 0.0017 7 8 6.3607 -1.0520 0.0012 8 8 6.4267 1.1671 0.0022 9 6 7.7734 1.0967 0.0027 10 1 8.2638 0.1344 0.0031 11 6 8.5294 2.2610 0.0038 12 7 9.8417 2.1922 0.0048 13 14 7.6812 3.9252 0.0038 14 1 7.4555 4.3657 1.4039 15 1 8.5372 4.9171 -0.6952 16 1 6.3766 3.8160 -0.6972 17 6 3.5750 -1.2073 0.0057 18 6 2.1955 -1.2000 0.0000 19 16 1.3085 -2.7224 0.0005 20 6 0.4391 -2.7391 1.5925 21 8 2.3218 -3.7184 -0.0249 22 8 0.3844 -2.5899 -1.0709 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8897 -0.5142 25 1 -0.3633 -0.8902 -0.5135 26 1 1.6518 2.1336 0.0004 27 1 4.1109 2.1456 0.0010 28 1 10.3699 3.0057 0.0052 29 1 4.1114 -2.1448 0.0105 30 1 1.1632 -2.8412 2.4009 31 1 -0.2552 -3.5790 1.6185 32 1 -0.1130 -1.8072 1.7148 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051769212.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:49 Heat of formation + Delta-G solvation = -114.993258 kcal Electronic energy + Delta-G solvation = -19922.426746 eV Core-core repulsion = 16555.422412 eV Total energy + Delta-G solvation = -3367.004334 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.90244 -38.64656 -37.33462 -36.09460 -35.47185 -33.15486 -32.41363 -31.33134 -29.79695 -27.85521 -25.53900 -23.22651 -22.57412 -20.59372 -19.02286 -18.14080 -17.84730 -16.58538 -16.24541 -16.03554 -15.73278 -14.97918 -14.89902 -14.87312 -14.41416 -14.13800 -13.74024 -13.52789 -13.31935 -12.78103 -12.56082 -12.47416 -12.30312 -12.25650 -12.15134 -11.76783 -11.51337 -11.35343 -11.17965 -10.64942 -10.62153 -10.49581 -9.81508 -9.41353 -9.34370 -8.84473 -8.77344 -6.49627 -4.20789 -0.12395 0.66014 1.06749 2.67491 2.90744 3.14385 3.15826 3.25848 3.62181 3.84381 3.99079 4.04884 4.13518 4.46429 4.51229 4.59980 4.77312 4.99802 5.02824 5.14884 5.24386 5.34072 5.35884 5.50033 5.69458 5.77340 5.92481 6.18591 6.30116 6.45910 6.76549 7.60603 7.92041 8.51227 8.87281 9.54486 10.58104 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.031099 B = 0.004541 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.122943 B = 6163.933397 C = 6850.781098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.018 3.982 3 C -0.150 4.150 4 C -0.022 4.022 5 C -0.110 4.110 6 C 0.442 3.558 7 O -0.531 6.531 8 O -0.242 6.242 9 C -0.374 4.374 10 H 0.113 0.887 11 C 0.066 3.934 12 N -0.864 5.864 13 Si 0.905 3.095 14 H -0.271 1.271 15 H -0.280 1.280 16 H -0.260 1.260 17 C 0.031 3.969 18 C -0.672 4.672 19 S 2.502 3.498 20 C -0.655 4.655 21 O -0.934 6.934 22 O -0.936 6.936 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.104 0.896 26 H 0.136 0.864 27 H 0.144 0.856 28 H 0.282 0.718 29 H 0.159 0.841 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.301 -2.534 3.658 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.017 3.983 3 C -0.168 4.168 4 C -0.041 4.041 5 C -0.112 4.112 6 C 0.289 3.711 7 O -0.427 6.427 8 O -0.150 6.150 9 C -0.449 4.449 10 H 0.130 0.870 11 C -0.139 4.139 12 N -0.503 5.503 13 Si 0.730 3.270 14 H -0.197 1.197 15 H -0.205 1.205 16 H -0.184 1.184 17 C 0.012 3.988 18 C -0.758 4.758 19 S 2.682 3.318 20 C -0.805 4.805 21 O -0.931 6.931 22 O -0.933 6.933 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.122 0.878 26 H 0.153 0.847 27 H 0.162 0.838 28 H 0.093 0.907 29 H 0.176 0.824 30 H 0.154 0.846 31 H 0.151 0.849 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.915 -3.279 3.004 22.362 hybrid contribution 0.120 1.632 0.613 1.747 sum -21.795 -1.648 3.617 22.155 Atomic orbital electron populations 1.21699 0.90677 1.07134 1.03562 1.19638 0.95569 0.92033 0.91094 1.21115 0.94040 0.97764 1.03920 1.21871 0.94158 0.98537 0.89488 1.19478 0.91560 0.94032 1.06124 1.20333 0.87201 0.83147 0.80423 1.90704 1.69588 1.32476 1.49907 1.83501 1.22784 1.32287 1.76448 1.20750 0.75730 0.97438 1.51006 0.86950 1.24586 0.94751 0.99066 0.95497 1.69586 1.04137 1.30348 1.46197 0.86217 0.80085 0.81646 0.79010 1.19670 1.20499 1.18371 1.21050 0.91323 0.99217 0.87193 1.30157 1.05505 1.18472 1.21700 1.05096 0.75276 0.74146 0.77253 1.30316 1.15095 1.11945 1.23113 1.93598 1.56418 1.56479 1.86588 1.93533 1.64327 1.85770 1.49670 0.89835 0.89364 0.87780 0.84658 0.83780 0.90747 0.82367 0.84598 0.84903 0.84898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 8.47 36.01 0.31 -1.05 16 2 C 0.02 0.21 5.87 -104.52 -0.61 -0.41 16 3 C -0.15 -1.83 9.68 -39.64 -0.38 -2.21 16 4 C -0.02 -0.35 9.62 -39.16 -0.38 -0.72 16 5 C -0.11 -2.09 5.87 -104.98 -0.62 -2.70 16 6 C 0.44 10.79 7.84 34.58 0.27 11.06 16 7 O -0.53 -14.54 15.59 -19.28 -0.30 -14.84 16 8 O -0.24 -6.33 7.82 -21.62 -0.17 -6.50 16 9 C -0.37 -11.00 10.11 30.95 0.31 -10.69 16 10 H 0.11 3.65 7.09 -52.49 -0.37 3.28 16 11 C 0.07 1.85 5.50 -17.52 -0.10 1.75 16 12 N -0.86 -25.09 13.96 55.49 0.77 -24.31 16 13 Si 0.91 20.66 28.62 -169.99 -4.86 15.79 16 14 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 15 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 16 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 17 C 0.03 0.53 9.05 -39.16 -0.35 0.18 16 18 C -0.67 -8.88 5.57 -39.64 -0.22 -9.10 16 19 S 2.50 26.92 5.20 -107.50 -0.56 26.36 16 20 C -0.65 -3.65 10.63 101.05 1.07 -2.58 16 21 O -0.93 -13.66 16.73 -57.54 -0.96 -14.62 16 22 O -0.94 -11.81 15.34 -57.54 -0.88 -12.69 16 23 H 0.08 0.40 6.98 -51.93 -0.36 0.04 16 24 H 0.09 0.57 8.08 -51.93 -0.42 0.15 16 25 H 0.10 0.86 4.87 -51.93 -0.25 0.60 16 26 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 27 H 0.14 2.23 7.61 -52.49 -0.40 1.83 16 28 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.16 2.81 6.80 -52.48 -0.36 2.45 16 30 H 0.14 0.65 8.14 -51.92 -0.42 0.23 16 31 H 0.13 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.13 0.50 5.85 -51.92 -0.30 0.19 16 LS Contribution 292.71 15.07 4.41 4.41 Total: -1.00 -36.73 292.71 -6.12 -42.85 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -2.87 Total: 0.03 kcal Atomic # 6 Polarization: -15.78 SS G_CDS: -0.70 Total: -16.48 kcal Atomic # 7 Polarization: -25.09 SS G_CDS: 0.77 Total: -24.31 kcal Atomic # 8 Polarization: -46.33 SS G_CDS: -2.32 Total: -48.65 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.86 Total: 15.79 kcal Atomic # 16 Polarization: 26.92 SS G_CDS: -0.56 Total: 26.36 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -36.73 -6.12 -42.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051769212.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.143 kcal (2) G-P(sol) polarization free energy of solvation -36.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds