Wall clock time and date at job start Tue Mar 31 2020 05:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99729 * 2 1 4 4 H 1.48499 * 109.47025 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47025 * 300.00026 * 3 2 1 6 6 H 1.48493 * 109.47253 * 60.00352 * 3 2 1 7 7 C 1.37874 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00163 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99737 * 359.97438 * 7 2 1 10 10 S 1.81402 * 109.46895 * 179.97438 * 9 7 2 11 11 O 1.42100 * 108.57668 * 65.51414 * 10 9 7 12 12 O 1.42096 * 108.57881 * 294.48623 * 10 9 7 13 13 C 1.81398 * 101.92042 * 179.97438 * 10 9 7 14 14 C 1.50708 * 109.47294 * 180.02562 * 13 10 9 15 15 C 1.38372 * 119.84796 * 270.28026 * 14 13 10 16 16 C 1.37938 * 120.14963 * 180.28044 * 15 14 13 17 17 C 1.39633 * 119.84852 * 359.44003 * 16 15 14 18 18 C 1.47723 * 120.15316 * 180.30600 * 17 16 15 19 19 O 1.21471 * 119.99606 * 359.97438 * 18 17 16 20 20 O 1.34709 * 120.00179 * 179.97438 * 18 17 16 21 21 C 1.39630 * 119.69783 * 0.27990 * 17 16 15 22 22 C 1.37948 * 119.84903 * 359.97438 * 21 17 16 23 23 H 0.96999 * 120.00555 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47363 * 60.00420 * 9 7 2 25 25 H 1.09004 * 109.47284 * 299.99928 * 9 7 2 26 26 H 1.09000 * 109.47663 * 60.00232 * 13 10 9 27 27 H 1.08996 * 109.47570 * 299.99953 * 13 10 9 28 28 H 1.07998 * 119.92432 * 0.02562 * 15 14 13 29 29 H 1.08002 * 120.07979 * 179.72201 * 16 15 14 30 30 H 0.96694 * 117.00098 * 179.97438 * 20 18 17 31 31 H 1.08004 * 120.07581 * 180.02562 * 21 17 16 32 32 H 1.07997 * 119.92171 * 179.97438 * 22 21 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 16 2.4299 -3.8778 -0.0021 11 8 3.1494 -3.8597 1.2232 12 8 3.1475 -3.8586 -1.2284 13 6 1.3244 -5.3160 -0.0011 14 6 2.1448 -6.5803 -0.0015 15 6 2.5236 -7.1549 -1.2019 16 6 3.2696 -8.3152 -1.2096 17 6 3.6523 -8.9034 -0.0025 18 6 4.4569 -10.1423 -0.0029 19 8 4.7867 -10.6518 -1.0551 20 8 4.8249 -10.7069 1.1635 21 6 3.2714 -8.3150 1.2052 22 6 2.5210 -7.1575 1.1983 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 0.6946 -5.2909 -0.8903 27 1 0.6966 -5.2912 0.8896 28 1 2.2312 -6.6962 -2.1349 29 1 3.5609 -8.7652 -2.1472 30 1 5.3504 -11.5169 1.1126 31 1 3.5644 -8.7645 2.1425 32 1 2.2254 -6.7016 2.1317 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058256898.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:02 Heat of formation + Delta-G solvation = -145.779774 kcal Electronic energy + Delta-G solvation = -19313.843454 eV Core-core repulsion = 15945.504117 eV Total energy + Delta-G solvation = -3368.339337 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.61025 -39.01499 -36.32819 -36.11394 -35.16319 -33.40878 -33.24768 -31.20863 -29.20081 -28.14700 -24.10055 -23.30360 -22.85462 -21.06351 -18.37742 -18.16487 -17.65822 -17.01176 -16.01990 -15.83512 -15.75763 -15.69231 -14.97723 -14.92263 -14.59334 -14.15930 -13.70429 -13.36288 -12.91779 -12.55612 -12.55309 -12.20957 -12.01489 -11.81143 -11.43878 -11.29819 -11.19545 -11.14774 -10.96236 -10.87317 -10.73388 -10.56056 -9.83724 -9.32880 -9.18197 -8.78547 -8.76370 -6.38387 -4.48131 0.29491 0.93676 1.19774 2.34049 2.76661 3.18074 3.25420 3.32938 3.58241 3.67962 4.11837 4.25332 4.44941 4.67041 4.75410 4.77800 4.92803 5.01084 5.16649 5.26148 5.42363 5.46817 5.70972 5.84808 6.02118 6.13541 6.21329 6.31252 6.55770 6.61283 6.63310 7.42967 7.64009 7.69109 8.54190 9.19598 10.73445 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.046189 B = 0.003468 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.061530 B = 8071.240491 C = 8080.688130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.073 0.927 9 C -0.400 4.400 10 S 2.390 3.610 11 O -0.949 6.949 12 O -0.949 6.949 13 C -0.600 4.600 14 C -0.035 4.035 15 C -0.120 4.120 16 C -0.051 4.051 17 C -0.136 4.136 18 C 0.531 3.469 19 O -0.516 6.516 20 O -0.512 6.512 21 C -0.058 4.058 22 C -0.122 4.122 23 H 0.268 0.732 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.141 0.859 27 H 0.141 0.859 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.413 0.587 31 H 0.142 0.858 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 -16.767 1.942 16.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.189 1.189 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.091 0.909 9 C -0.535 4.535 10 S 2.574 3.426 11 O -0.946 6.946 12 O -0.946 6.946 13 C -0.722 4.722 14 C -0.036 4.036 15 C -0.139 4.139 16 C -0.069 4.069 17 C -0.138 4.138 18 C 0.376 3.624 19 O -0.406 6.406 20 O -0.323 6.323 21 C -0.076 4.076 22 C -0.141 4.141 23 H 0.078 0.922 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.161 0.839 29 H 0.160 0.840 30 H 0.272 0.728 31 H 0.160 0.840 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.485 -16.502 1.680 16.772 hybrid contribution -0.313 0.221 -0.030 0.385 sum 2.171 -16.280 1.650 16.507 Atomic orbital electron populations 1.69947 1.06257 1.27715 1.47862 1.24937 0.95045 0.99636 0.93497 0.86282 0.80450 0.81971 0.78067 1.18920 1.20321 1.20317 1.20403 0.93037 0.88348 1.55117 0.90868 1.27521 1.09661 1.09561 1.06790 1.09244 0.79828 0.78190 0.75307 1.93482 1.69676 1.85772 1.45701 1.93485 1.69744 1.85758 1.45624 1.29791 1.15303 1.14823 1.12281 1.19448 0.95712 0.94356 0.94064 1.21178 0.98857 0.95497 0.98343 1.21241 0.94214 0.94048 0.97367 1.19062 1.04129 0.95361 0.95245 1.20898 0.76885 0.83746 0.80919 1.90884 1.53597 1.63198 1.32917 1.84565 1.68302 1.44291 1.35184 1.21438 0.94330 0.94247 0.97568 1.21219 0.98893 0.95747 0.98249 0.92194 0.89572 0.89563 0.84051 0.84049 0.83936 0.84041 0.72797 0.83987 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.21 13.29 55.43 0.74 -23.47 16 2 C 0.07 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.91 20.65 29.54 -169.99 -5.02 15.63 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.53 -14.27 9.13 -34.44 -0.31 -14.58 16 8 H 0.07 1.97 7.71 -52.48 -0.40 1.57 16 9 C -0.40 -9.02 5.56 36.00 0.20 -8.82 16 10 S 2.39 46.66 4.62 -107.50 -0.50 46.16 16 11 O -0.95 -21.01 18.10 -57.83 -1.05 -22.05 16 12 O -0.95 -21.13 18.10 -57.83 -1.05 -22.18 16 13 C -0.60 -8.20 5.92 36.01 0.21 -7.99 16 14 C -0.03 -0.48 5.15 -104.52 -0.54 -1.02 16 15 C -0.12 -1.59 9.68 -39.64 -0.38 -1.97 16 16 C -0.05 -0.64 9.60 -39.17 -0.38 -1.01 16 17 C -0.14 -1.69 5.87 -104.98 -0.62 -2.31 16 18 C 0.53 6.20 8.27 34.61 0.29 6.48 16 19 O -0.52 -7.27 17.13 -19.24 -0.33 -7.60 16 20 O -0.51 -4.26 12.68 -40.52 -0.51 -4.77 16 21 C -0.06 -0.67 9.62 -39.17 -0.38 -1.05 16 22 C -0.12 -1.57 9.68 -39.64 -0.38 -1.95 16 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 25 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 26 H 0.14 1.58 8.09 -51.92 -0.42 1.16 16 27 H 0.14 1.57 8.08 -51.93 -0.42 1.15 16 28 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.14 1.60 7.65 -52.49 -0.40 1.20 16 30 H 0.41 1.50 9.11 45.56 0.42 1.91 16 31 H 0.14 1.32 7.61 -52.48 -0.40 0.92 16 32 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 LS Contribution 307.67 15.07 4.64 4.64 Total: -1.00 -35.43 307.67 -7.92 -43.36 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -2.46 Total: 2.60 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: -2.39 Total: -32.31 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.74 Total: -23.47 kcal Atomic # 8 Polarization: -53.66 SS G_CDS: -2.94 Total: -56.60 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 46.66 SS G_CDS: -0.50 Total: 46.16 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.43 -7.92 -43.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058256898.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.422 kcal (2) G-P(sol) polarization free energy of solvation -35.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds