Wall clock time and date at job start Tue Mar 31 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 S 1.81397 * 109.47235 * 2 1 4 4 O 1.42105 * 110.54275 * 68.37271 * 3 2 1 5 5 O 1.42101 * 110.54298 * 291.62373 * 3 2 1 6 6 C 1.76193 * 104.44909 * 179.97438 * 3 2 1 7 7 C 1.38378 * 119.84695 * 269.72144 * 6 3 2 8 8 C 1.37935 * 120.15725 * 179.76186 * 7 6 3 9 9 C 1.39669 * 119.83909 * 0.53786 * 8 7 6 10 10 C 1.47666 * 120.15150 * 179.69522 * 9 8 7 11 11 O 1.21503 * 120.00176 * 180.02562 * 10 9 8 12 12 O 1.34734 * 119.99760 * 0.02562 * 10 9 8 13 13 C 1.34852 * 116.99852 * 179.97438 * 12 10 9 14 14 H 1.08002 * 120.00152 * 0.02562 * 13 12 10 15 15 C 1.38811 * 119.99987 * 179.97438 * 13 12 10 16 16 N 1.31417 * 120.00011 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00101 * 0.02562 * 15 13 12 18 18 H 1.48498 * 109.47431 * 89.99777 * 17 15 13 19 19 H 1.48503 * 109.47007 * 209.99667 * 17 15 13 20 20 H 1.48494 * 109.47128 * 329.99558 * 17 15 13 21 21 C 1.39661 * 119.69513 * 359.72226 * 9 8 7 22 22 C 1.37932 * 119.84786 * 359.97438 * 21 9 8 23 23 H 1.08995 * 109.47216 * 300.00010 * 1 2 3 24 24 H 1.09000 * 109.46805 * 60.00123 * 1 2 3 25 25 H 1.08998 * 109.47000 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47149 * 240.00025 * 2 1 3 27 27 H 1.09000 * 109.46805 * 119.99877 * 2 1 3 28 28 H 1.08000 * 119.91981 * 0.02915 * 7 6 3 29 29 H 1.07999 * 120.08280 * 180.23508 * 8 7 6 30 30 H 0.97003 * 120.00274 * 180.02562 * 16 15 13 31 31 H 1.08007 * 120.07886 * 179.97438 * 21 9 8 32 32 H 1.07999 * 119.92333 * 179.97438 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8387 2.3438 -1.2370 6 6 3.8899 1.5559 0.0008 7 6 4.5760 1.5016 1.2013 8 6 5.9496 1.3760 1.2094 9 6 6.6490 1.3148 0.0020 10 6 8.1201 1.1871 0.0026 11 8 8.7258 1.1346 -1.0494 12 8 8.7907 1.1287 1.1697 13 6 10.1323 1.0116 1.0997 14 1 10.6212 0.9693 0.1377 15 6 10.8850 0.9466 2.2642 16 7 12.1925 0.8331 2.1960 17 14 10.0394 1.0206 3.9283 18 1 9.6942 -0.3546 4.3697 19 1 10.9521 1.6443 4.9199 20 1 8.8000 1.8309 3.8181 21 6 5.9506 1.3757 -1.2060 22 6 4.5764 1.4950 -1.1992 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.0342 1.5534 2.1341 29 1 6.4834 1.3299 2.1470 30 1 12.7185 0.7873 3.0098 31 1 6.4852 1.3293 -2.1433 32 1 4.0352 1.5426 -2.1326 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058336208.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:13 Heat of formation + Delta-G solvation = -121.289999 kcal Electronic energy + Delta-G solvation = -19492.800397 eV Core-core repulsion = 16125.523016 eV Total energy + Delta-G solvation = -3367.277381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.83273 -38.44811 -37.27203 -36.11503 -35.52690 -33.53359 -32.58625 -31.53250 -31.06105 -26.21469 -24.61731 -23.69310 -22.72461 -20.42840 -19.13855 -18.28921 -18.02730 -17.28461 -16.50034 -16.26407 -15.56947 -14.99508 -14.94320 -14.65265 -14.47160 -14.11653 -13.72002 -13.56444 -13.23375 -12.92651 -12.83011 -12.57677 -12.25548 -12.22078 -12.13749 -11.95421 -11.47131 -11.23619 -11.09084 -10.71147 -10.68720 -10.53078 -9.90680 -9.43130 -9.30539 -9.08030 -8.87869 -6.59966 -4.29028 -0.18426 0.46744 1.30882 2.65999 2.87035 3.11151 3.12882 3.23337 3.62691 3.84368 3.88481 3.96521 4.07037 4.24287 4.41422 4.76418 4.79312 4.84677 4.94160 5.14460 5.29741 5.33168 5.35109 5.50838 5.61343 5.70204 5.89114 6.05163 6.26465 6.50923 6.77051 7.50268 7.81487 8.41499 8.76388 9.44030 10.46868 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.031168 B = 0.003994 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.127380 B = 7008.371216 C = 7568.664237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.610 4.610 3 S 2.499 3.501 4 O -0.937 6.937 5 O -0.938 6.938 6 C -0.657 4.657 7 C -0.034 4.034 8 C -0.103 4.103 9 C -0.027 4.027 10 C 0.429 3.571 11 O -0.531 6.531 12 O -0.235 6.235 13 C -0.370 4.370 14 H 0.114 0.886 15 C 0.066 3.934 16 N -0.857 5.857 17 Si 0.906 3.094 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.257 1.257 21 C -0.093 4.093 22 C -0.034 4.034 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.136 0.864 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.146 0.854 30 H 0.284 0.716 31 H 0.146 0.854 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.875 -2.726 -1.276 22.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.739 4.739 3 S 2.679 3.321 4 O -0.934 6.934 5 O -0.935 6.935 6 C -0.745 4.745 7 C -0.053 4.053 8 C -0.122 4.122 9 C -0.029 4.029 10 C 0.276 3.724 11 O -0.428 6.428 12 O -0.143 6.143 13 C -0.445 4.445 14 H 0.132 0.868 15 C -0.140 4.140 16 N -0.495 5.495 17 Si 0.731 3.269 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.181 1.181 21 C -0.112 4.112 22 C -0.053 4.053 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.102 0.898 26 H 0.155 0.845 27 H 0.155 0.845 28 H 0.162 0.838 29 H 0.164 0.836 30 H 0.095 0.905 31 H 0.163 0.837 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -21.936 -1.993 -1.403 22.071 hybrid contribution 0.727 -0.732 0.738 1.269 sum -21.210 -2.726 -0.665 21.394 Atomic orbital electron populations 1.21561 0.90373 1.05200 1.03672 1.30212 1.06947 1.24414 1.12338 1.05373 0.74377 0.77606 0.74732 1.93571 1.83448 1.71951 1.44467 1.93568 1.83459 1.71961 1.44491 1.30518 1.25375 1.18967 0.99627 1.20877 0.94572 0.93271 0.96575 1.21681 0.94018 0.97876 0.98631 1.19778 0.91447 0.97286 0.94396 1.20407 0.87321 0.81496 0.83129 1.90690 1.69364 1.50288 1.32462 1.83516 1.23198 1.75117 1.32444 1.20802 0.76341 1.49870 0.97508 0.86850 1.24634 0.94780 0.95258 0.99319 1.69585 1.04543 1.44715 1.30654 0.86196 0.80075 0.79365 0.81297 1.19500 1.20347 1.18121 1.21371 0.93679 0.98002 0.98167 1.20816 0.94308 0.93593 0.96567 0.90772 0.90786 0.89789 0.84518 0.84503 0.83775 0.83637 0.90524 0.83669 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.92 37.16 0.37 -0.44 16 2 C -0.61 -3.64 6.70 37.16 0.25 -3.40 16 3 S 2.50 25.06 5.15 -107.50 -0.55 24.51 16 4 O -0.94 -11.99 17.10 -57.54 -0.98 -12.97 16 5 O -0.94 -11.85 17.11 -57.54 -0.98 -12.84 16 6 C -0.66 -8.02 5.67 -39.48 -0.22 -8.24 16 7 C -0.03 -0.45 9.45 -39.64 -0.37 -0.82 16 8 C -0.10 -1.64 9.62 -39.16 -0.38 -2.02 16 9 C -0.03 -0.51 5.87 -104.98 -0.62 -1.12 16 10 C 0.43 10.14 7.84 34.58 0.27 10.41 16 11 O -0.53 -13.99 15.59 -19.27 -0.30 -14.30 16 12 O -0.23 -6.02 7.82 -21.64 -0.17 -6.19 16 13 C -0.37 -10.65 10.11 30.94 0.31 -10.33 16 14 H 0.11 3.59 7.09 -52.49 -0.37 3.22 16 15 C 0.07 1.82 5.50 -17.52 -0.10 1.72 16 16 N -0.86 -24.33 13.96 55.49 0.77 -23.56 16 17 Si 0.91 20.31 28.62 -169.99 -4.86 15.44 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 H -0.26 -5.59 7.11 56.52 0.40 -5.19 16 21 C -0.09 -1.46 9.60 -39.16 -0.38 -1.83 16 22 C -0.03 -0.43 9.45 -39.64 -0.37 -0.81 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.14 0.59 8.14 -51.92 -0.42 0.17 16 27 H 0.14 0.61 8.14 -51.92 -0.42 0.19 16 28 H 0.14 1.51 7.55 -52.49 -0.40 1.12 16 29 H 0.15 2.29 7.61 -52.49 -0.40 1.89 16 30 H 0.28 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.15 2.20 7.65 -52.48 -0.40 1.80 16 32 H 0.15 1.45 7.56 -52.49 -0.40 1.05 16 LS Contribution 302.87 15.07 4.56 4.56 Total: -1.00 -35.30 302.87 -6.97 -42.27 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -3.21 Total: -0.05 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: -1.24 Total: -16.88 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.77 Total: -23.56 kcal Atomic # 8 Polarization: -43.86 SS G_CDS: -2.44 Total: -46.30 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.86 Total: 15.44 kcal Atomic # 16 Polarization: 25.06 SS G_CDS: -0.55 Total: 24.51 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -35.30 -6.97 -42.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058336208.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.021 kcal (2) G-P(sol) polarization free energy of solvation -35.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds