Wall clock time and date at job start Tue Mar 31 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48501 * 109.47053 * 240.00031 * 3 2 1 5 5 H 1.48505 * 109.47045 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47035 * 119.99620 * 3 2 1 7 7 C 1.37873 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00625 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99874 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46968 * 180.02562 * 9 7 2 11 11 O 1.45198 * 109.47146 * 180.02562 * 10 9 7 12 12 C 1.34229 * 117.00163 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00329 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99999 * 179.97438 * 12 11 10 15 15 O 1.42898 * 109.47083 * 180.02562 * 14 12 11 16 16 C 1.35929 * 117.00101 * 180.02562 * 15 14 12 17 17 C 1.38701 * 120.05648 * 359.95940 * 16 15 14 18 18 C 1.38153 * 119.95853 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.07157 * 0.02562 * 18 17 16 20 20 C 1.38238 * 120.11971 * 0.02562 * 19 18 17 21 21 C 1.38255 * 120.04624 * 359.94924 * 20 19 18 22 22 Cl 1.73604 * 120.04140 * 180.02562 * 21 20 19 23 23 H 0.96999 * 120.00144 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46930 * 60.00425 * 9 7 2 25 25 H 1.09000 * 109.47198 * 299.99900 * 9 7 2 26 26 H 1.09001 * 109.47601 * 60.00347 * 10 9 7 27 27 H 1.09003 * 109.47420 * 299.99871 * 10 9 7 28 28 H 1.09004 * 109.46884 * 60.00529 * 14 12 11 29 29 H 1.08996 * 109.47098 * 300.00251 * 14 12 11 30 30 H 1.08003 * 120.02367 * 0.04181 * 17 16 15 31 31 H 1.08001 * 119.96476 * 180.29683 * 18 17 16 32 32 H 1.08006 * 119.93616 * 179.97438 * 19 18 17 33 33 H 1.08008 * 119.97717 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2504 -6.0452 -0.0018 13 8 3.4570 -5.9820 -0.0013 14 6 1.5662 -7.3880 -0.0018 15 8 2.5504 -8.4241 -0.0019 16 6 2.0974 -9.7056 -0.0025 17 6 0.7340 -9.9605 -0.0022 18 6 0.2757 -11.2638 -0.0023 19 6 1.1749 -12.3144 -0.0022 20 6 2.5344 -12.0640 -0.0015 21 6 2.9983 -10.7616 -0.0019 22 17 4.7057 -10.4473 -0.0017 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6044 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.9431 -7.4782 -0.8917 29 1 0.9438 -7.4787 0.8883 30 1 0.0310 -9.1406 -0.0021 31 1 -0.7859 -11.4623 -0.0069 32 1 0.8142 -13.3325 -0.0019 33 1 3.2346 -12.8863 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058817535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:10 Heat of formation + Delta-G solvation = -109.970881 kcal Electronic energy + Delta-G solvation = -18726.191696 eV Core-core repulsion = 15357.361443 eV Total energy + Delta-G solvation = -3368.830253 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.74965 -39.81354 -37.83498 -36.54091 -36.10364 -33.40647 -31.29459 -30.88873 -30.28976 -28.58445 -25.04992 -23.28006 -22.76007 -21.26161 -20.58445 -18.87782 -17.37578 -16.88817 -16.88508 -16.48871 -16.05318 -15.53511 -15.47383 -14.93072 -14.53290 -14.23984 -13.79158 -13.48846 -13.04734 -12.59195 -12.38770 -12.27417 -11.77575 -11.59430 -11.49593 -11.25311 -11.11695 -10.99390 -10.78829 -10.74079 -10.28225 -9.73036 -9.68600 -9.36083 -9.27337 -8.55849 -8.47777 -6.14082 -4.18816 0.76205 0.93108 1.94776 2.18508 2.37898 3.24412 3.28444 3.32300 3.34636 3.48680 4.34533 4.37549 4.42633 4.64416 4.80172 4.84115 4.87433 4.96857 5.09526 5.22639 5.32779 5.68291 5.80232 6.00047 6.01532 6.02036 6.21947 6.55839 6.82653 6.85945 7.49787 7.56031 7.81644 8.06140 8.19127 8.86387 9.45906 10.97362 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.002699 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.466921 B =10370.756384 C =11082.474172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.353 6.353 12 C 0.457 3.543 13 O -0.491 6.491 14 C 0.065 3.935 15 O -0.282 6.282 16 C 0.142 3.858 17 C -0.200 4.200 18 C -0.074 4.074 19 C -0.148 4.148 20 C -0.074 4.074 21 C -0.068 4.068 22 Cl -0.052 7.052 23 H 0.264 0.736 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.141 0.859 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -25.462 -0.007 25.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.078 0.922 9 C -0.012 4.012 10 C 0.005 3.995 11 O -0.270 6.270 12 C 0.298 3.702 13 O -0.378 6.378 14 C -0.011 4.011 15 O -0.194 6.194 16 C 0.095 3.905 17 C -0.219 4.219 18 C -0.092 4.092 19 C -0.167 4.167 20 C -0.092 4.092 21 C -0.096 4.096 22 Cl -0.023 7.023 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.125 0.875 29 H 0.125 0.875 30 H 0.159 0.841 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.353 -25.140 -0.007 25.142 hybrid contribution 0.447 1.040 0.000 1.132 sum 0.800 -24.100 -0.007 24.113 Atomic orbital electron populations 1.69959 1.06104 1.27184 1.49611 1.24977 0.94930 0.99409 0.94769 0.86515 0.79481 0.82374 0.78839 1.20027 1.21094 1.20023 1.20933 0.93194 0.90036 1.52477 0.92234 1.19184 0.94169 0.88867 0.98966 1.23755 0.96495 0.77975 1.01304 1.86478 1.42242 1.15427 1.82842 1.22632 0.86579 0.86663 0.74362 1.90699 1.15356 1.87914 1.43826 1.22011 0.90227 0.83432 1.05433 1.86192 1.33832 1.11349 1.88049 1.18714 0.91883 0.83549 0.96328 1.21340 0.93309 0.99097 1.08121 1.21080 1.00318 0.91643 0.96154 1.21054 0.92214 0.99757 1.03630 1.20945 0.96417 0.93967 0.97893 1.20244 0.85527 0.92609 1.11183 1.98395 1.10814 1.96090 1.96971 0.92598 0.95251 0.95264 0.92002 0.92012 0.87502 0.87505 0.84109 0.84905 0.84904 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.53 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.08 1.68 5.40 37.16 0.20 1.88 16 11 O -0.35 -6.75 10.22 -39.25 -0.40 -7.15 16 12 C 0.46 7.84 8.03 36.01 0.29 8.13 16 13 O -0.49 -10.11 16.25 -25.48 -0.41 -10.52 16 14 C 0.07 0.78 5.33 36.01 0.19 0.97 16 15 O -0.28 -3.89 9.13 -39.47 -0.36 -4.25 16 16 C 0.14 1.62 6.68 -39.20 -0.26 1.36 16 17 C -0.20 -1.72 9.04 -39.44 -0.36 -2.08 16 18 C -0.07 -0.51 10.04 -39.60 -0.40 -0.91 16 19 C -0.15 -1.00 10.04 -39.56 -0.40 -1.40 16 20 C -0.07 -0.60 9.83 -39.58 -0.39 -0.99 16 21 C -0.07 -0.75 6.33 -39.36 -0.25 -1.00 16 22 Cl -0.05 -0.63 28.51 -51.86 -1.48 -2.11 16 23 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 24 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 27 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 28 H 0.11 0.98 7.66 -51.93 -0.40 0.58 16 29 H 0.11 0.98 7.66 -51.93 -0.40 0.58 16 30 H 0.14 0.94 6.30 -52.48 -0.33 0.60 16 31 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 32 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 33 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -32.57 313.30 -7.77 -40.35 By element: Atomic # 1 Polarization: -1.37 SS G_CDS: -3.63 Total: -5.00 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -1.93 Total: -6.94 kcal Atomic # 7 Polarization: -26.09 SS G_CDS: 0.74 Total: -25.36 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -1.18 Total: -21.92 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.48 Total: -2.11 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.57 -7.77 -40.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.625 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds