Wall clock time and date at job start Tue Mar 31 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99933 * 2 1 4 4 H 1.48501 * 109.47053 * 240.00031 * 3 2 1 5 5 H 1.48505 * 109.47045 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47035 * 119.99620 * 3 2 1 7 7 C 1.37873 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00625 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99874 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.46968 * 180.02562 * 9 7 2 11 11 O 1.45198 * 109.47146 * 180.02562 * 10 9 7 12 12 C 1.34229 * 117.00163 * 179.97438 * 11 10 9 13 13 O 1.20827 * 120.00329 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99999 * 179.97438 * 12 11 10 15 15 O 1.42898 * 109.47083 * 180.02562 * 14 12 11 16 16 C 1.35929 * 117.00101 * 180.02562 * 15 14 12 17 17 C 1.38701 * 120.05648 * 359.95940 * 16 15 14 18 18 C 1.38153 * 119.95853 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.07157 * 0.02562 * 18 17 16 20 20 C 1.38238 * 120.11971 * 0.02562 * 19 18 17 21 21 C 1.38255 * 120.04624 * 359.94924 * 20 19 18 22 22 Cl 1.73604 * 120.04140 * 180.02562 * 21 20 19 23 23 H 0.96999 * 120.00144 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46930 * 60.00425 * 9 7 2 25 25 H 1.09000 * 109.47198 * 299.99900 * 9 7 2 26 26 H 1.09001 * 109.47601 * 60.00347 * 10 9 7 27 27 H 1.09003 * 109.47420 * 299.99871 * 10 9 7 28 28 H 1.09004 * 109.46884 * 60.00529 * 14 12 11 29 29 H 1.08996 * 109.47098 * 300.00251 * 14 12 11 30 30 H 1.08003 * 120.02367 * 0.04181 * 17 16 15 31 31 H 1.08001 * 119.96476 * 180.29683 * 18 17 16 32 32 H 1.08006 * 119.93616 * 179.97438 * 19 18 17 33 33 H 1.08008 * 119.97717 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5193 -4.9195 -0.0011 12 6 2.2504 -6.0452 -0.0018 13 8 3.4570 -5.9820 -0.0013 14 6 1.5662 -7.3880 -0.0018 15 8 2.5504 -8.4241 -0.0019 16 6 2.0974 -9.7056 -0.0025 17 6 0.7340 -9.9605 -0.0022 18 6 0.2757 -11.2638 -0.0023 19 6 1.1749 -12.3144 -0.0022 20 6 2.5344 -12.0640 -0.0015 21 6 2.9983 -10.7616 -0.0019 22 17 4.7057 -10.4473 -0.0017 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6044 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.9431 -7.4782 -0.8917 29 1 0.9438 -7.4787 0.8883 30 1 0.0310 -9.1406 -0.0021 31 1 -0.7859 -11.4623 -0.0069 32 1 0.8142 -13.3325 -0.0019 33 1 3.2346 -12.8863 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058817535.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:09 Heat of formation + Delta-G solvation = -128.264633 kcal Electronic energy + Delta-G solvation = -18726.984973 eV Core-core repulsion = 15357.361443 eV Total energy + Delta-G solvation = -3369.623530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.81705 -40.96848 -38.68002 -37.63717 -37.33732 -35.47697 -32.57115 -31.86812 -31.38109 -29.61879 -26.97428 -24.14564 -23.50494 -22.96713 -21.99160 -19.73715 -18.86529 -18.14105 -18.10042 -17.88090 -17.15173 -16.77858 -16.66842 -16.35800 -15.52968 -15.14495 -14.87225 -14.68581 -14.37896 -14.19257 -13.82532 -13.18834 -13.05969 -12.86064 -12.64033 -12.61926 -12.56706 -12.26796 -12.19117 -11.89961 -11.78100 -11.55853 -11.53659 -11.37266 -10.61742 -9.90846 -9.27846 -8.28302 -6.41354 0.13826 0.29220 0.99428 1.01302 1.24209 1.41564 1.44006 1.52435 2.33559 2.47130 2.63820 3.06334 3.45462 3.75711 3.87304 3.96128 4.01398 4.19199 4.21659 4.22638 4.34967 4.43732 4.65816 4.78097 5.08612 5.19033 5.27309 5.44964 5.45295 5.46499 5.64733 5.72049 6.04662 6.10637 6.60511 6.71989 7.28411 8.83984 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.037959 B = 0.002699 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.466921 B =10370.756384 C =11082.474172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.553 4.553 8 H 0.063 0.937 9 C 0.032 3.968 10 C 0.091 3.909 11 O -0.355 6.355 12 C 0.456 3.544 13 O -0.530 6.530 14 C 0.074 3.926 15 O -0.314 6.314 16 C 0.114 3.886 17 C -0.201 4.201 18 C -0.070 4.070 19 C -0.140 4.140 20 C -0.078 4.078 21 C -0.092 4.092 22 Cl -0.078 7.078 23 H 0.269 0.731 24 H 0.010 0.990 25 H 0.010 0.990 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.140 0.860 29 H 0.140 0.860 30 H 0.161 0.839 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.322 -26.806 -0.008 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.591 4.591 8 H 0.082 0.918 9 C -0.005 4.005 10 C 0.018 3.982 11 O -0.271 6.271 12 C 0.299 3.701 13 O -0.419 6.419 14 C -0.001 4.001 15 O -0.228 6.228 16 C 0.068 3.932 17 C -0.219 4.219 18 C -0.088 4.088 19 C -0.158 4.158 20 C -0.096 4.096 21 C -0.120 4.120 22 Cl -0.049 7.049 23 H 0.077 0.923 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.158 0.842 29 H 0.158 0.842 30 H 0.179 0.821 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -0.761 -26.517 -0.007 26.528 hybrid contribution 0.704 1.286 0.000 1.466 sum -0.057 -25.231 -0.007 25.232 Atomic orbital electron populations 1.70072 1.07713 1.28395 1.50240 1.25922 0.95841 1.03277 0.94036 0.85407 0.78238 0.77592 0.79269 1.19154 1.20366 1.19144 1.21345 0.93694 0.91315 1.52734 0.91837 1.18983 0.94285 0.90227 0.97032 1.23245 0.95206 0.78555 1.01174 1.86456 1.42104 1.15337 1.83228 1.23696 0.86329 0.87580 0.72500 1.90682 1.17233 1.88335 1.45688 1.22152 0.89437 0.80056 1.08476 1.86121 1.35103 1.12563 1.88993 1.18986 0.93269 0.82428 0.98483 1.21641 0.92212 1.00725 1.07339 1.21530 1.02053 0.90837 0.94374 1.21493 0.91337 1.01450 1.01487 1.21237 0.97742 0.93230 0.97395 1.20582 0.84327 0.93893 1.13153 1.98376 1.13020 1.96296 1.97220 0.92256 0.97127 0.97140 0.92116 0.92126 0.84225 0.84234 0.82123 0.81702 0.81737 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.74 13.29 21.45 0.28 -54.45 16 2 C 0.01 0.48 5.46 84.65 0.46 0.94 16 3 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 7 C -0.55 -31.18 9.11 25.60 0.23 -30.95 16 8 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.68 5.35 29.85 0.16 1.84 16 10 C 0.09 4.06 5.40 71.98 0.39 4.45 16 11 O -0.35 -13.55 10.22 -51.41 -0.53 -14.08 16 12 C 0.46 15.53 8.03 71.24 0.57 16.10 16 13 O -0.53 -22.25 16.25 28.39 0.46 -21.79 16 14 C 0.07 1.65 5.33 71.24 0.38 2.03 16 15 O -0.31 -8.50 9.13 -73.68 -0.67 -9.17 16 16 C 0.11 2.47 6.68 22.52 0.15 2.62 16 17 C -0.20 -2.86 9.04 22.36 0.20 -2.66 16 18 C -0.07 -0.70 10.04 22.26 0.22 -0.47 16 19 C -0.14 -1.38 10.04 22.28 0.22 -1.16 16 20 C -0.08 -1.13 9.83 22.27 0.22 -0.91 16 21 C -0.09 -1.99 6.33 22.41 0.14 -1.84 16 22 Cl -0.08 -1.96 28.51 -2.72 -0.08 -2.04 16 23 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 24 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 27 H 0.06 2.69 8.13 -2.39 -0.02 2.67 16 28 H 0.14 2.18 7.66 -2.39 -0.02 2.16 16 29 H 0.14 2.18 7.66 -2.39 -0.02 2.16 16 30 H 0.16 1.52 6.30 -2.91 -0.02 1.50 16 31 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 32 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -72.52 313.30 5.98 -66.54 By element: Atomic # 1 Polarization: -1.55 SS G_CDS: 1.12 Total: -0.42 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: 3.36 Total: -10.01 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.28 Total: -54.45 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.74 Total: -45.04 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -0.08 Total: -2.04 kcal Total: -72.52 5.98 -66.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058817535.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.725 kcal (2) G-P(sol) polarization free energy of solvation -72.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds