Wall clock time and date at job start Tue Mar 31 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31443 * 1 3 3 Si 1.86792 * 120.00360 * 2 1 4 4 H 1.48501 * 109.47400 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47376 * 300.00148 * 3 2 1 6 6 H 1.48492 * 109.47182 * 60.00040 * 3 2 1 7 7 C 1.38756 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99862 * 179.97438 * 7 2 1 9 9 O 1.34923 * 119.99995 * 359.97438 * 7 2 1 10 10 C 1.34315 * 116.99605 * 180.02562 * 9 7 2 11 11 O 1.21207 * 120.00136 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99665 * 179.97438 * 10 9 7 13 13 C 1.52994 * 109.47166 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47609 * 180.02562 * 13 12 10 15 15 O 1.42893 * 109.47763 * 180.02562 * 14 13 12 16 16 C 1.35916 * 117.00323 * 179.97438 * 15 14 13 17 17 C 1.38728 * 120.04362 * 0.27384 * 16 15 14 18 18 C 1.38137 * 119.95782 * 180.23553 * 17 16 15 19 19 C 1.38365 * 120.04335 * 359.48598 * 18 17 16 20 20 Cl 1.73604 * 119.96019 * 180.27880 * 19 18 17 21 21 C 1.38371 * 120.08418 * 0.25849 * 19 18 17 22 22 C 1.38143 * 120.04298 * 0.02562 * 21 19 18 23 23 H 0.97000 * 119.99513 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47016 * 59.99994 * 12 10 9 25 25 H 1.09000 * 109.47192 * 300.00168 * 12 10 9 26 26 H 1.09006 * 109.46950 * 60.00208 * 13 12 10 27 27 H 1.09000 * 109.47410 * 300.00289 * 13 12 10 28 28 H 1.08998 * 109.47155 * 59.99702 * 14 13 12 29 29 H 1.09008 * 109.46599 * 300.00148 * 14 13 12 30 30 H 1.07998 * 120.01718 * 359.97438 * 17 16 15 31 31 H 1.08002 * 119.98114 * 179.77139 * 18 17 16 32 32 H 1.08001 * 119.97793 * 180.02562 * 21 19 18 33 33 H 1.07998 * 120.01925 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6176 0.0000 4 1 3.7085 1.3462 -0.0006 5 1 1.8898 2.3964 -1.2125 6 1 1.8898 2.3963 1.2124 7 6 2.0081 -1.2017 -0.0005 8 1 3.0881 -1.2018 -0.0010 9 8 1.3334 -2.3701 -0.0005 10 6 2.0650 -3.4966 -0.0005 11 8 3.2754 -3.4332 -0.0010 12 6 1.3807 -4.8393 0.0000 13 6 2.4343 -5.9486 -0.0007 14 6 1.7397 -7.3119 -0.0008 15 8 2.7238 -8.3480 -0.0009 16 6 2.2707 -9.6294 -0.0004 17 6 0.9069 -9.8839 -0.0056 18 6 0.4484 -11.1869 -0.0002 19 6 1.3482 -12.2380 -0.0003 20 17 0.7695 -13.8747 -0.0008 21 6 2.7088 -11.9862 -0.0005 22 6 3.1713 -10.6845 0.0000 23 1 -0.4849 0.8401 -0.0004 24 1 0.7576 -4.9299 -0.8897 25 1 0.7582 -4.9295 0.8903 26 1 3.0578 -5.8582 0.8888 27 1 3.0565 -5.8583 -0.8911 28 1 1.1165 -7.4021 -0.8905 29 1 1.1173 -7.4025 0.8895 30 1 0.2043 -9.0637 -0.0096 31 1 -0.6133 -11.3854 -0.0004 32 1 3.4097 -12.8079 -0.0011 33 1 4.2333 -10.4884 -0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062374917.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:06 Heat of formation + Delta-G solvation = -132.299922 kcal Electronic energy + Delta-G solvation = -18447.920312 eV Core-core repulsion = 15078.121799 eV Total energy + Delta-G solvation = -3369.798513 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.24740 -40.96155 -38.81294 -37.47748 -37.13001 -34.82347 -34.28720 -32.17873 -30.74117 -28.88123 -27.12340 -24.50849 -23.48427 -22.57610 -21.42471 -19.87989 -19.32358 -18.50964 -17.52545 -17.49525 -17.03768 -16.66819 -16.42049 -16.19665 -15.55980 -15.03232 -14.75114 -14.53467 -14.19979 -14.15976 -13.65217 -13.40354 -13.20784 -13.02705 -12.78776 -12.63311 -12.35819 -12.17210 -12.13405 -12.02713 -11.96511 -11.65038 -11.45566 -11.06101 -10.70120 -10.13180 -9.14287 -8.54880 -6.34388 0.19159 0.22835 1.19719 1.29977 1.34417 1.52406 1.65265 1.95404 2.20386 2.60261 2.88967 2.96594 3.70984 3.83391 3.90079 3.93004 4.04051 4.14629 4.34730 4.40190 4.41880 4.52468 4.57710 4.86281 4.92517 4.98544 5.01928 5.18093 5.20162 5.22831 5.27162 5.57605 5.83464 6.35435 6.68557 6.91050 7.76676 8.66027 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.065902 B = 0.002189 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 424.771654 B =12788.447638 C =13187.470029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.005 4.005 3 Si 1.016 2.984 4 H -0.266 1.266 5 H -0.260 1.260 6 H -0.260 1.260 7 C -0.421 4.421 8 H 0.079 0.921 9 O -0.246 6.246 10 C 0.393 3.607 11 O -0.587 6.587 12 C -0.088 4.088 13 C -0.096 4.096 14 C 0.065 3.935 15 O -0.328 6.328 16 C 0.122 3.878 17 C -0.201 4.201 18 C -0.072 4.072 19 C -0.087 4.087 20 Cl -0.073 7.073 21 C -0.071 4.071 22 C -0.152 4.152 23 H 0.279 0.721 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.156 0.844 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 -23.831 -0.002 23.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.205 4.205 3 Si 0.836 3.164 4 H -0.191 1.191 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.497 4.497 8 H 0.097 0.903 9 O -0.154 6.154 10 C 0.241 3.759 11 O -0.485 6.485 12 C -0.125 4.125 13 C -0.134 4.134 14 C -0.010 4.010 15 O -0.242 6.242 16 C 0.076 3.924 17 C -0.219 4.219 18 C -0.090 4.090 19 C -0.113 4.113 20 Cl -0.044 7.044 21 C -0.089 4.089 22 C -0.171 4.171 23 H 0.088 0.912 24 H 0.140 0.860 25 H 0.140 0.860 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.174 0.826 31 H 0.170 0.830 32 H 0.174 0.826 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.561 -23.727 -0.003 23.734 hybrid contribution 0.254 0.734 0.001 0.777 sum -0.307 -22.993 -0.002 22.995 Atomic orbital electron populations 1.70070 1.07542 1.29299 1.47055 1.26514 0.96912 1.02315 0.94768 0.84581 0.77718 0.74879 0.79269 1.19058 1.18413 1.18405 1.21422 0.92070 0.81342 1.54852 0.90282 1.83896 1.40367 1.14275 1.76898 1.24553 0.86728 0.88606 0.76014 1.90537 1.17504 1.88768 1.51685 1.21045 0.98657 0.85487 1.07346 1.21109 0.97567 0.90893 1.03810 1.22876 0.90206 0.84105 1.03802 1.86057 1.37188 1.12743 1.88233 1.19374 0.93226 0.84267 0.95516 1.21497 0.94369 0.98481 1.07589 1.21088 1.00707 0.90491 0.96736 1.20959 0.94318 0.85984 1.10067 1.98363 1.89062 1.19784 1.97227 1.21060 0.93927 0.96814 0.97121 1.20619 1.00541 0.90035 1.05901 0.91188 0.86038 0.86033 0.91656 0.91660 0.89413 0.89428 0.82649 0.82976 0.82573 0.83541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.81 13.67 21.63 0.30 -52.52 16 2 C 0.00 -0.28 5.49 84.87 0.47 0.19 16 3 Si 1.02 43.33 29.55 68.60 2.03 45.36 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.42 -25.51 9.65 67.94 0.66 -24.85 16 8 H 0.08 4.90 6.86 -2.91 -0.02 4.88 16 9 O -0.25 -14.23 9.75 14.80 0.14 -14.08 16 10 C 0.39 19.03 7.91 71.24 0.56 19.59 16 11 O -0.59 -31.84 15.22 20.78 0.32 -31.53 16 12 C -0.09 -2.75 5.81 29.85 0.17 -2.57 16 13 C -0.10 -2.68 4.87 30.59 0.15 -2.53 16 14 C 0.06 1.29 4.74 71.98 0.34 1.63 16 15 O -0.33 -7.72 10.14 -92.61 -0.94 -8.66 16 16 C 0.12 2.48 6.69 22.50 0.15 2.63 16 17 C -0.20 -3.35 9.04 22.36 0.20 -3.15 16 18 C -0.07 -1.11 9.82 22.28 0.22 -0.89 16 19 C -0.09 -1.42 6.32 22.33 0.14 -1.28 16 20 Cl -0.07 -1.12 28.95 -2.72 -0.08 -1.20 16 21 C -0.07 -1.11 9.82 22.28 0.22 -0.89 16 22 C -0.15 -2.75 9.99 22.36 0.22 -2.53 16 23 H 0.28 14.73 8.31 -92.71 -0.77 13.96 16 24 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 25 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 26 H 0.06 2.03 8.10 -2.38 -0.02 2.01 16 27 H 0.06 2.03 8.10 -2.39 -0.02 2.01 16 28 H 0.09 1.40 7.65 -2.39 -0.02 1.38 16 29 H 0.09 1.40 7.67 -2.38 -0.02 1.38 16 30 H 0.16 1.99 6.30 -2.91 -0.02 1.97 16 31 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 32 H 0.16 1.77 8.06 -2.91 -0.02 1.74 16 33 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -73.73 312.18 6.40 -67.33 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.13 Total: 9.95 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 3.50 Total: -14.65 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.30 Total: -52.52 kcal Atomic # 8 Polarization: -53.79 SS G_CDS: -0.48 Total: -54.27 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -73.73 6.40 -67.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062374917.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.969 kcal (2) G-P(sol) polarization free energy of solvation -73.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds