Wall clock time and date at job start Tue Mar 31 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46583 * 143.65473 * 3 2 1 5 5 C 1.36892 * 119.99569 * 130.45259 * 4 3 2 6 6 H 1.08001 * 120.00174 * 122.18964 * 5 4 3 7 7 C 1.39028 * 120.00186 * 301.90989 * 5 4 3 8 8 N 1.31384 * 119.99948 * 24.64303 * 7 5 4 9 9 Si 1.86803 * 120.00317 * 204.64330 * 7 5 4 10 10 H 1.48500 * 109.47134 * 89.99716 * 9 7 5 11 11 H 1.48495 * 109.47328 * 210.00067 * 9 7 5 12 12 H 1.48500 * 109.47063 * 329.99938 * 9 7 5 13 13 C 1.34774 * 120.00366 * 310.44934 * 4 3 2 14 14 O 1.21606 * 120.00228 * 184.33387 * 13 4 3 15 15 C 1.47617 * 119.99751 * 4.32947 * 13 4 3 16 16 C 1.39694 * 120.10792 * 338.87932 * 15 13 4 17 17 C 1.38062 * 119.89235 * 179.78855 * 16 15 13 18 18 F 1.35095 * 119.94688 * 180.23026 * 17 16 15 19 19 C 1.38806 * 120.10446 * 0.48280 * 17 16 15 20 20 F 1.35097 * 119.89221 * 179.72413 * 19 17 16 21 21 C 1.38803 * 120.21549 * 359.74560 * 19 17 16 22 22 F 1.35096 * 119.94501 * 179.97438 * 21 19 17 23 23 C 1.38062 * 120.10576 * 0.02562 * 21 19 17 24 24 H 1.08998 * 109.47483 * 23.65500 * 3 2 1 25 25 H 1.09000 * 109.47292 * 263.65045 * 3 2 1 26 26 H 0.96999 * 119.99888 * 179.97438 * 8 7 5 27 27 H 1.07998 * 120.05598 * 359.97438 * 16 15 13 28 28 H 1.08001 * 120.05196 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.1134 -0.8186 5 6 4.0487 1.9618 -0.3225 6 1 4.9840 2.0894 -0.8471 7 6 3.8101 2.6635 0.8538 8 7 2.9507 2.1997 1.7327 9 14 4.7116 4.2659 1.1847 10 1 3.9218 5.3996 0.6406 11 1 4.8868 4.4421 2.6487 12 1 6.0428 4.2297 0.5277 13 6 2.6063 1.3019 -2.0601 14 8 3.0665 2.1764 -2.7689 15 6 1.5117 0.4467 -2.5596 16 6 1.2742 -0.8000 -1.9758 17 6 0.2465 -1.5943 -2.4436 18 9 0.0130 -2.7981 -1.8767 19 6 -0.5439 -1.1603 -3.4988 20 9 -1.5449 -1.9434 -3.9568 21 6 -0.3089 0.0756 -4.0853 22 9 -1.0813 0.4924 -5.1124 23 6 0.7135 0.8791 -3.6214 24 1 2.9718 -0.9405 -0.4123 25 1 2.9713 0.1145 1.0213 26 1 2.7846 2.6891 2.5535 27 1 1.8917 -1.1406 -1.1578 28 1 0.8958 1.8404 -4.0787 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063010377.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:40 Heat of formation + Delta-G solvation = -48.467477 kcal Electronic energy + Delta-G solvation = -22194.709574 eV Core-core repulsion = 18185.582074 eV Total energy + Delta-G solvation = -4009.127500 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.051 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.67469 -49.07648 -48.36123 -40.44352 -37.55418 -36.62430 -34.71326 -32.39546 -30.49541 -30.41673 -27.94407 -25.60425 -23.34353 -23.23195 -20.45150 -18.37820 -18.09082 -17.86965 -17.46326 -16.92622 -16.63959 -16.17891 -15.45770 -15.33887 -15.30174 -15.02981 -14.84387 -14.31741 -14.16756 -13.89378 -13.64760 -13.43094 -12.71491 -12.37183 -12.19114 -12.08458 -11.76117 -11.70824 -11.47718 -11.03304 -11.01866 -10.60158 -10.48892 -9.13252 -9.01241 -8.80617 -8.63078 -7.90475 -6.77320 -4.50643 0.53677 0.82062 2.82671 3.03976 3.08117 3.18202 3.24626 3.35388 3.40342 3.80735 3.97931 4.16506 4.23506 4.31372 4.44013 4.52983 4.66754 4.91663 4.96128 5.44528 5.63126 5.64665 5.79032 5.87303 6.06340 6.38631 6.62883 7.23840 7.97936 8.01269 8.07036 8.69041 8.83868 9.46074 10.29100 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.026809 B = 0.005871 C = 0.005188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.169065 B = 4768.101492 C = 5395.975261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.217 3.783 3 C 0.178 3.822 4 N -0.427 5.427 5 C -0.335 4.335 6 H 0.099 0.901 7 C 0.065 3.935 8 N -0.854 5.854 9 Si 0.918 3.082 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.264 1.264 13 C 0.515 3.485 14 O -0.542 6.542 15 C -0.070 4.070 16 C -0.150 4.150 17 C 0.095 3.905 18 F -0.120 7.120 19 C 0.041 3.959 20 F -0.121 7.121 21 C 0.086 3.914 22 F -0.122 7.122 23 C -0.084 4.084 24 H 0.093 0.907 25 H 0.152 0.848 26 H 0.278 0.722 27 H 0.192 0.808 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.217 -6.433 -3.948 7.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.099 4.099 3 C 0.052 3.948 4 N -0.148 5.148 5 C -0.461 4.461 6 H 0.117 0.883 7 C -0.145 4.145 8 N -0.487 5.487 9 Si 0.743 3.257 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.189 1.189 13 C 0.303 3.697 14 O -0.422 6.422 15 C -0.075 4.075 16 C -0.168 4.168 17 C 0.074 3.926 18 F -0.098 7.098 19 C 0.020 3.980 20 F -0.099 7.099 21 C 0.065 3.935 22 F -0.100 7.100 23 C -0.104 4.104 24 H 0.110 0.890 25 H 0.170 0.830 26 H 0.089 0.911 27 H 0.208 0.792 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.789 -6.000 -4.085 7.776 hybrid contribution 0.100 0.418 0.219 0.482 sum -2.689 -5.582 -3.866 7.303 Atomic orbital electron populations 1.81169 1.13199 1.07502 1.10732 1.29191 0.96098 0.93547 0.91016 1.19938 0.80072 0.91441 1.03300 1.43132 1.35629 1.24944 1.11055 1.19233 0.97826 1.20212 1.08849 0.88341 1.25727 0.95733 0.97788 0.95232 1.69741 1.34158 1.36944 1.07861 0.86096 0.80172 0.82277 0.77145 1.19879 1.20951 1.18864 1.18063 0.82779 0.84370 0.84453 1.90685 1.60650 1.34576 1.56292 1.20120 0.97993 0.93926 0.95445 1.22916 0.98146 0.94386 1.01388 1.17038 0.97632 0.83613 0.94352 1.91539 1.93875 1.41056 1.83334 1.17682 0.91254 0.90845 0.98237 1.91523 1.57580 1.73044 1.87801 1.17108 0.94070 0.92607 0.89734 1.91539 1.73294 1.89776 1.55430 1.21153 0.92515 1.00832 0.95924 0.89013 0.83024 0.91122 0.79237 0.82034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.02 17.09 42.05 0.72 -8.30 15 2 C 0.22 4.06 10.34 -20.76 -0.21 3.85 15 3 C 0.18 3.11 5.04 -6.83 -0.03 3.07 15 4 N -0.43 -9.07 2.75 -121.10 -0.33 -9.40 15 5 C -0.33 -7.78 8.52 -15.00 -0.13 -7.91 15 6 H 0.10 2.33 7.94 -52.49 -0.42 1.92 15 7 C 0.06 1.49 5.44 -17.45 -0.10 1.39 15 8 N -0.85 -19.70 11.44 55.50 0.64 -19.07 15 9 Si 0.92 18.58 29.62 -169.99 -5.03 13.55 15 10 H -0.27 -5.80 7.11 56.52 0.40 -5.40 15 11 H -0.28 -5.62 7.11 56.52 0.40 -5.22 15 12 H -0.26 -5.27 7.11 56.52 0.40 -4.87 15 13 C 0.52 11.06 7.30 -12.43 -0.09 10.96 15 14 O -0.54 -13.19 16.50 5.27 0.09 -13.10 15 15 C -0.07 -1.27 5.06 -104.98 -0.53 -1.80 15 16 C -0.15 -2.44 5.56 -39.10 -0.22 -2.66 15 17 C 0.09 1.54 6.79 -39.44 -0.27 1.27 15 18 F -0.12 -1.91 17.17 2.25 0.04 -1.87 15 19 C 0.04 0.68 7.32 -39.16 -0.29 0.39 15 20 F -0.12 -1.98 17.08 2.25 0.04 -1.94 15 21 C 0.09 1.38 7.29 -39.44 -0.29 1.10 15 22 F -0.12 -1.92 17.17 2.25 0.04 -1.88 15 23 C -0.08 -1.42 9.56 -39.10 -0.37 -1.80 15 24 H 0.09 1.20 6.23 -51.93 -0.32 0.88 15 25 H 0.15 2.79 6.24 -51.93 -0.32 2.47 15 26 H 0.28 6.19 8.31 -40.82 -0.34 5.85 15 27 H 0.19 2.78 2.79 -56.08 -0.16 2.63 15 28 H 0.16 2.62 7.79 -52.49 -0.41 2.21 15 LS Contribution 267.69 15.07 4.03 4.03 Total: -1.00 -26.58 267.69 -3.07 -29.65 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -0.76 Total: 0.46 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: -2.53 Total: 7.87 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 1.02 Total: -36.77 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.09 Total: -13.10 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.12 Total: -5.69 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -26.58 -3.07 -29.65 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063010377.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.820 kcal (2) G-P(sol) polarization free energy of solvation -26.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds