Wall clock time and date at job start Tue Mar 31 2020 05:26:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46948 * 2 1 4 4 C 1.50705 * 109.47042 * 119.99547 * 2 1 3 5 5 H 1.07992 * 120.00004 * 119.99894 * 4 2 1 6 6 C 1.37881 * 119.99905 * 300.00289 * 4 2 1 7 7 N 1.31508 * 119.99996 * 180.02562 * 6 4 2 8 8 Si 1.86804 * 119.99910 * 359.97438 * 6 4 2 9 9 H 1.48495 * 109.47076 * 90.00344 * 8 6 4 10 10 H 1.48502 * 109.46913 * 210.00387 * 8 6 4 11 11 H 1.48499 * 109.47317 * 330.00409 * 8 6 4 12 12 N 1.46898 * 109.47088 * 239.99350 * 2 1 3 13 13 C 1.46904 * 110.99886 * 179.41327 * 12 2 1 14 14 C 1.39048 * 110.99756 * 55.46429 * 12 2 1 15 15 N 1.32399 * 119.71535 * 58.53894 * 14 12 2 16 16 C 1.31955 * 121.63485 * 179.97438 * 15 14 12 17 17 C 1.38051 * 120.87230 * 0.02562 * 16 15 14 18 18 C 1.38846 * 119.33703 * 0.22415 * 17 16 15 19 19 C 1.38403 * 118.49246 * 359.49001 * 18 17 16 20 20 Br 1.89107 * 120.45785 * 180.25722 * 19 18 17 21 21 H 1.08998 * 109.47381 * 174.97589 * 1 2 3 22 22 H 1.08999 * 109.47515 * 294.97521 * 1 2 3 23 23 H 1.09002 * 109.47301 * 54.97333 * 1 2 3 24 24 H 0.96997 * 120.00414 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.46722 * 301.66317 * 13 12 2 26 26 H 1.09000 * 109.47231 * 61.66017 * 13 12 2 27 27 H 1.08997 * 109.47048 * 181.66475 * 13 12 2 28 28 H 1.08001 * 119.56216 * 179.97438 * 16 15 14 29 29 H 1.08001 * 120.33456 * 179.97438 * 17 16 15 30 30 H 1.07999 * 120.75089 * 179.74554 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1379 -0.8587 3.5566 8 14 0.6257 1.2800 2.6540 9 1 -0.8021 0.8747 2.6992 10 1 0.9771 1.9957 3.9069 11 1 0.8489 2.1774 1.4921 12 7 2.0196 -0.6926 -1.1993 13 6 3.4881 -0.7001 -1.2403 14 6 1.4919 -0.1242 -2.3534 15 7 1.7028 1.1576 -2.6092 16 6 1.2204 1.7356 -3.6929 17 6 0.4723 1.0184 -4.6049 18 6 0.2232 -0.3275 -4.3719 19 6 0.7472 -0.9079 -3.2299 20 35 0.4485 -2.7385 -2.8614 21 1 -0.3634 -1.0237 -0.0900 22 1 -0.3634 0.4339 0.9315 23 1 -0.3634 0.5898 -0.8415 24 1 1.9039 -0.5271 4.4376 25 1 3.8571 0.3255 -1.2244 26 1 3.8730 -1.2382 -0.3741 27 1 3.8236 -1.1929 -2.1528 28 1 1.4126 2.7838 -3.8683 29 1 0.0812 1.5003 -5.4888 30 1 -0.3627 -0.9093 -5.0681 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095890.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:42 Heat of formation + Delta-G solvation = 63.471795 kcal Electronic energy + Delta-G solvation = -15294.979947 eV Core-core repulsion = 12751.535798 eV Total energy + Delta-G solvation = -2543.444149 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.31695 -36.83417 -32.89828 -32.85653 -30.97314 -30.08795 -28.90005 -25.60591 -24.48572 -23.21712 -22.35363 -19.92956 -17.12082 -16.45957 -16.27006 -15.41405 -15.29584 -14.22183 -13.88182 -13.51427 -13.15807 -13.01739 -12.50294 -12.17365 -12.00882 -11.71535 -11.04712 -10.94612 -10.66443 -10.62133 -10.17515 -10.05121 -9.57724 -9.49857 -9.34177 -9.09591 -8.57263 -8.47696 -7.74889 -6.06896 -4.05522 1.05913 1.26676 1.93675 3.27306 3.38603 3.40983 3.78587 4.21079 4.40392 4.74094 4.81666 5.02881 5.23852 5.37777 5.40396 5.85471 6.00798 6.03183 6.28041 6.29873 6.42087 6.46300 6.59160 6.74990 6.86074 7.19447 7.53852 7.77289 7.98957 8.08260 8.61182 8.99239 9.54227 11.05564 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.008033 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.622286 B = 3484.996528 C = 4094.142793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.192 3.808 3 H 0.017 0.983 4 C -0.504 4.504 5 H 0.086 0.914 6 C 0.074 3.926 7 N -0.897 5.897 8 Si 0.881 3.119 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.267 1.267 12 N -0.478 5.478 13 C 0.046 3.954 14 C 0.347 3.653 15 N -0.503 5.503 16 C 0.119 3.881 17 C -0.190 4.190 18 C -0.049 4.049 19 C -0.125 4.125 20 Br -0.021 7.021 21 H 0.063 0.937 22 H 0.047 0.953 23 H 0.018 0.982 24 H 0.264 0.736 25 H 0.031 0.969 26 H 0.091 0.909 27 H 0.046 0.954 28 H 0.155 0.845 29 H 0.138 0.862 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 0.532 -17.478 17.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.086 3.914 3 H 0.034 0.966 4 C -0.542 4.542 5 H 0.104 0.896 6 C -0.128 4.128 7 N -0.535 5.535 8 Si 0.711 3.289 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.192 1.192 12 N -0.202 5.202 13 C -0.100 4.100 14 C 0.117 3.883 15 N -0.216 5.216 16 C -0.040 4.040 17 C -0.211 4.211 18 C -0.078 4.078 19 C -0.209 4.209 20 Br 0.064 6.936 21 H 0.082 0.918 22 H 0.066 0.934 23 H 0.037 0.963 24 H 0.074 0.926 25 H 0.049 0.951 26 H 0.110 0.890 27 H 0.065 0.935 28 H 0.172 0.828 29 H 0.155 0.845 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.750 -0.162 -16.478 16.900 hybrid contribution -0.929 1.622 -0.504 1.936 sum -4.678 1.460 -16.982 17.675 Atomic orbital electron populations 1.22197 0.98626 1.01166 0.98447 1.19774 0.91266 0.93346 0.86994 0.96552 1.20882 1.32125 1.13668 0.87544 0.89625 1.24852 0.95756 0.96482 0.95744 1.69860 1.45582 1.40175 0.97851 0.86960 0.80790 0.84066 0.77087 1.20544 1.22341 1.19195 1.60439 1.09137 1.51246 0.99328 1.22199 0.85281 1.00500 1.02051 1.20152 0.90241 0.86375 0.91534 1.68150 1.21647 1.11887 1.19882 1.22726 0.92323 1.00055 0.88937 1.22033 1.02557 0.94557 1.01929 1.21488 0.96296 0.95062 0.94913 1.22768 1.05315 0.93894 0.98936 1.96676 1.95102 1.05953 1.95910 0.91809 0.93411 0.96257 0.92567 0.95058 0.89018 0.93502 0.82787 0.84453 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.36 37.16 0.31 -3.12 16 2 C 0.19 4.69 1.46 -68.86 -0.10 4.59 16 3 H 0.02 0.44 7.00 -51.93 -0.36 0.08 16 4 C -0.50 -14.07 8.54 -34.44 -0.29 -14.36 16 5 H 0.09 2.56 6.96 -52.49 -0.37 2.20 16 6 C 0.07 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.90 -27.22 13.96 55.43 0.77 -26.45 16 8 Si 0.88 22.27 24.41 -169.99 -4.15 18.12 16 9 H -0.28 -6.88 6.83 56.52 0.39 -6.49 16 10 H -0.30 -7.44 7.11 56.52 0.40 -7.04 16 11 H -0.27 -6.64 6.53 56.52 0.37 -6.27 16 12 N -0.48 -10.25 3.88 -174.73 -0.68 -10.93 16 13 C 0.05 0.92 9.12 60.07 0.55 1.47 16 14 C 0.35 6.61 3.79 -154.96 -0.59 6.02 16 15 N -0.50 -9.19 9.70 -12.41 -0.12 -9.31 16 16 C 0.12 1.63 11.17 -17.57 -0.20 1.44 16 17 C -0.19 -2.18 10.10 -39.43 -0.40 -2.58 16 18 C -0.05 -0.63 9.93 -39.30 -0.39 -1.02 16 19 C -0.13 -2.06 6.27 -39.17 -0.25 -2.30 16 20 Br -0.02 -0.34 33.12 -68.01 -2.25 -2.59 16 21 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 22 H 0.05 1.15 3.22 -51.93 -0.17 0.99 16 23 H 0.02 0.41 7.31 -51.93 -0.38 0.03 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.03 0.62 8.08 -51.93 -0.42 0.20 16 26 H 0.09 1.93 6.56 -51.93 -0.34 1.59 16 27 H 0.05 0.82 8.11 -51.93 -0.42 0.40 16 28 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 29 H 0.14 1.07 8.06 -52.49 -0.42 0.64 16 30 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 267.58 15.07 4.03 4.03 Total: -1.00 -31.05 267.58 -7.18 -38.22 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -3.33 Total: -3.25 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -1.45 Total: -7.84 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.03 Total: -46.69 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.15 Total: 18.12 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.25 Total: -2.59 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.05 -7.18 -38.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095890.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.694 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds