Wall clock time and date at job start Tue Mar 31 2020 05:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46860 * 2 1 4 4 C 1.50702 * 109.47102 * 239.99831 * 2 1 3 5 5 H 1.07989 * 119.99838 * 239.99794 * 4 2 1 6 6 C 1.37878 * 119.99792 * 60.00139 * 4 2 1 7 7 N 1.31515 * 119.99779 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00076 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47164 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47197 * 119.99696 * 8 6 4 11 11 H 1.48501 * 109.47408 * 240.00210 * 8 6 4 12 12 N 1.46896 * 109.46951 * 120.00036 * 2 1 3 13 13 C 1.46894 * 111.00382 * 58.95538 * 12 2 1 14 14 C 1.39053 * 111.00135 * 294.99834 * 12 2 1 15 15 N 1.32402 * 119.70865 * 72.52535 * 14 12 2 16 16 C 1.31954 * 121.63652 * 179.70900 * 15 14 12 17 17 C 1.38060 * 120.86659 * 0.53195 * 16 15 14 18 18 C 1.38841 * 119.33715 * 359.47749 * 17 16 15 19 19 C 1.38409 * 118.49727 * 0.25388 * 18 17 16 20 20 Br 1.89098 * 120.46119 * 180.02562 * 19 18 17 21 21 H 1.08998 * 109.47365 * 299.99934 * 1 2 3 22 22 H 1.08998 * 109.47147 * 60.00315 * 1 2 3 23 23 H 1.08999 * 109.46860 * 180.02562 * 1 2 3 24 24 H 0.97007 * 119.99360 * 179.97438 * 7 6 4 25 25 H 1.09006 * 109.47248 * 285.74427 * 13 12 2 26 26 H 1.09000 * 109.46925 * 45.73899 * 13 12 2 27 27 H 1.09005 * 109.47567 * 165.74317 * 13 12 2 28 28 H 1.07995 * 119.56825 * 180.28076 * 16 15 14 29 29 H 1.08007 * 120.33022 * 179.75217 * 17 16 15 30 30 H 1.07999 * 120.75600 * 180.27285 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1195 -4.0079 9 1 3.1474 -2.2863 -3.6038 10 1 1.1678 -1.5866 -4.8165 11 1 3.1473 -0.1858 -4.8161 12 7 2.0197 -0.6925 1.1994 13 6 1.5284 -2.0761 1.2460 14 6 1.6685 0.0001 2.3529 15 7 0.4088 0.0002 2.7604 16 6 0.0345 0.6397 3.8523 17 6 0.9490 1.3458 4.6081 18 6 2.2806 1.3712 4.2159 19 6 2.6445 0.6866 3.0693 20 35 4.4428 0.6835 2.4847 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7088 1.1612 -3.4844 25 1 0.4725 -2.0778 1.5167 26 1 1.6532 -2.5390 0.2671 27 1 2.0948 -2.6380 1.9887 28 1 -1.0014 0.6138 4.1564 29 1 0.6324 1.8694 5.4981 30 1 3.0159 1.9126 4.7925 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095891.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:44 Heat of formation + Delta-G solvation = 60.698076 kcal Electronic energy + Delta-G solvation = -15243.506550 eV Core-core repulsion = 12699.942123 eV Total energy + Delta-G solvation = -2543.564427 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.19099 -36.75936 -32.88013 -32.75722 -30.75722 -29.14701 -28.26930 -25.39657 -25.14691 -22.81425 -22.28549 -19.81076 -16.62584 -16.39895 -16.13802 -15.35542 -14.90777 -14.06714 -13.92977 -13.31803 -13.09479 -12.65230 -12.12849 -11.87200 -11.30137 -11.15613 -10.99830 -10.82985 -10.67765 -10.54771 -10.11940 -10.04007 -9.81489 -9.33650 -9.26782 -8.67367 -8.43207 -8.32079 -7.51687 -6.00422 -4.04657 1.20891 1.41403 2.07007 3.31353 3.39053 3.43575 3.92879 4.33590 4.53148 4.88892 4.94383 5.16455 5.31826 5.53961 5.58203 6.00469 6.15994 6.20741 6.45386 6.61090 6.75378 6.93329 7.09672 7.17747 7.51446 7.70926 7.82639 7.99867 8.23255 8.34279 8.55094 8.99103 9.59239 11.06509 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.021726 B = 0.007613 C = 0.006246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.480690 B = 3677.013326 C = 4481.551598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.221 3.779 3 H 0.038 0.962 4 C -0.499 4.499 5 H 0.066 0.934 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.486 5.486 13 C 0.036 3.964 14 C 0.347 3.653 15 N -0.493 5.493 16 C 0.115 3.885 17 C -0.193 4.193 18 C -0.050 4.050 19 C -0.127 4.127 20 Br -0.025 7.025 21 H 0.028 0.972 22 H 0.083 0.917 23 H 0.030 0.970 24 H 0.260 0.740 25 H 0.038 0.962 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.153 0.847 29 H 0.135 0.865 30 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 0.946 14.047 14.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.117 3.883 3 H 0.056 0.944 4 C -0.538 4.538 5 H 0.084 0.916 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.208 5.208 13 C -0.111 4.111 14 C 0.117 3.883 15 N -0.206 5.206 16 C -0.044 4.044 17 C -0.214 4.214 18 C -0.079 4.079 19 C -0.211 4.211 20 Br 0.060 6.940 21 H 0.047 0.953 22 H 0.102 0.898 23 H 0.049 0.951 24 H 0.070 0.930 25 H 0.056 0.944 26 H 0.105 0.895 27 H 0.061 0.939 28 H 0.170 0.830 29 H 0.153 0.847 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.276 0.566 13.119 13.534 hybrid contribution -0.437 0.206 -0.182 0.516 sum 2.839 0.772 12.937 13.268 Atomic orbital electron populations 1.22443 0.99293 0.99916 1.01042 1.19362 0.90804 0.94194 0.83900 0.94448 1.21067 1.30816 1.12625 0.89248 0.91559 1.24905 0.95158 0.95131 0.98972 1.69919 1.36845 1.22995 1.23329 0.86436 0.78511 0.79656 0.82791 1.19649 1.21167 1.21061 1.60713 1.57375 1.02686 1.00053 1.22259 0.97885 0.88310 1.02667 1.20200 0.85965 0.90161 0.92007 1.68295 1.18128 1.20150 1.14003 1.22739 0.99950 0.92013 0.89709 1.21989 0.93548 1.03243 1.02598 1.21444 0.96740 0.95697 0.93980 1.22708 0.93374 1.05776 0.99249 1.96650 1.08673 1.98005 1.90681 0.95342 0.89848 0.95104 0.93032 0.94377 0.89506 0.93934 0.82960 0.84669 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.22 8.07 37.16 0.30 -3.92 16 2 C 0.22 5.66 2.32 -68.86 -0.16 5.50 16 3 H 0.04 1.08 8.11 -51.93 -0.42 0.66 16 4 C -0.50 -13.59 7.73 -34.44 -0.27 -13.86 16 5 H 0.07 1.80 6.87 -52.49 -0.36 1.44 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -25.53 11.32 55.43 0.63 -24.90 16 8 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.49 -10.79 4.00 -174.73 -0.70 -11.49 16 13 C 0.04 0.74 8.56 60.06 0.51 1.25 16 14 C 0.35 6.97 5.23 -154.95 -0.81 6.16 16 15 N -0.49 -9.30 6.76 -12.41 -0.08 -9.38 16 16 C 0.12 1.68 11.17 -17.56 -0.20 1.48 16 17 C -0.19 -2.41 10.10 -39.42 -0.40 -2.81 16 18 C -0.05 -0.70 9.93 -39.30 -0.39 -1.09 16 19 C -0.13 -2.24 6.27 -39.17 -0.25 -2.49 16 20 Br -0.02 -0.42 33.12 -68.01 -2.25 -2.68 16 21 H 0.03 0.67 5.80 -51.93 -0.30 0.37 16 22 H 0.08 2.30 6.07 -51.93 -0.32 1.99 16 23 H 0.03 0.75 6.72 -51.93 -0.35 0.40 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.04 0.78 6.35 -51.93 -0.33 0.45 16 26 H 0.09 1.86 6.22 -51.93 -0.32 1.54 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.15 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 267.51 15.07 4.03 4.03 Total: -1.00 -29.50 267.51 -8.37 -37.87 By element: Atomic # 1 Polarization: 1.65 SS G_CDS: -3.23 Total: -1.58 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.75 Total: -8.22 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.16 Total: -45.77 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 35 Polarization: -0.42 SS G_CDS: -2.25 Total: -2.68 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -29.50 -8.37 -37.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095891.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.573 kcal (2) G-P(sol) polarization free energy of solvation -29.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds