Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 O 1.42904 * 109.47063 * 240.00486 * 2 1 3 5 5 C 1.35666 * 116.99970 * 275.13587 * 4 2 1 6 6 C 1.38687 * 120.14162 * 5.42344 * 5 4 2 7 7 C 1.38056 * 120.10755 * 179.69485 * 6 5 4 8 8 C 1.38674 * 120.39731 * 0.60407 * 7 6 5 9 9 Cl 1.73590 * 119.86028 * 179.69577 * 8 7 6 10 10 C 1.37861 * 120.27872 * 359.67267 * 8 7 6 11 11 C 1.39805 * 119.88844 * 0.02617 * 10 8 7 12 12 C 1.47351 * 120.19547 * 179.97438 * 11 10 8 13 13 O 1.21542 * 119.99795 * 180.02562 * 12 11 10 14 14 O 1.34769 * 119.99724 * 0.02562 * 12 11 10 15 15 C 1.34868 * 116.99937 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99913 * 359.97438 * 15 14 12 17 17 C 1.38800 * 120.00431 * 180.02562 * 15 14 12 18 18 N 1.31424 * 119.99409 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00111 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47326 * 90.00131 * 19 17 15 21 21 H 1.48509 * 109.47090 * 209.99973 * 19 17 15 22 22 H 1.48506 * 109.47497 * 329.99951 * 19 17 15 23 23 H 1.09002 * 109.47009 * 59.99595 * 1 2 3 24 24 H 1.09001 * 109.46706 * 299.99747 * 1 2 3 25 25 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47097 * 120.00367 * 2 1 3 27 27 H 1.09001 * 109.46732 * 60.00147 * 3 2 1 28 28 H 1.08997 * 109.47023 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47440 * 300.00157 * 3 2 1 30 30 H 1.08010 * 119.94672 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.80470 * 180.27366 * 7 6 5 32 32 H 1.08003 * 120.05593 * 180.02562 * 10 8 7 33 33 H 0.97004 * 119.99624 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.1097 -2.0246 -1.0991 6 6 1.6559 -2.7023 0.0225 7 6 1.7556 -4.0777 0.0881 8 6 2.3201 -4.7910 -0.9587 9 17 2.4457 -6.5194 -0.8582 10 6 2.7816 -4.1332 -2.0789 11 6 2.6809 -2.7412 -2.1604 12 6 3.1725 -2.0312 -3.3543 13 8 3.0835 -0.8209 -3.4212 14 8 3.7207 -2.7239 -4.3721 15 6 4.1510 -2.0134 -5.4346 16 1 4.0479 -0.9384 -5.4429 17 6 4.7254 -2.6638 -6.5179 18 7 4.8503 -3.9721 -6.5080 19 14 5.3206 -1.6798 -7.9898 20 1 6.7401 -1.2940 -7.7861 21 1 5.2038 -2.5065 -9.2180 22 1 4.4912 -0.4566 -8.1358 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.2197 -2.1536 0.8443 31 1 1.3966 -4.6010 0.9620 32 1 3.2203 -4.6924 -2.8922 33 1 5.2521 -4.4267 -7.2649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064115111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = -101.593353 kcal Electronic energy + Delta-G solvation = -19959.034107 eV Core-core repulsion = 16590.567131 eV Total energy + Delta-G solvation = -3368.466977 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35350 -38.66456 -37.64103 -36.03662 -35.01907 -33.11044 -32.18138 -31.12186 -29.40926 -27.30688 -25.62669 -23.72665 -23.05716 -20.79466 -20.34532 -18.15176 -17.69283 -16.98161 -16.05494 -15.45516 -15.32405 -14.74280 -14.44623 -14.34357 -14.19723 -13.90496 -13.36627 -12.99663 -12.63474 -12.54168 -12.35696 -12.16440 -11.98493 -11.60646 -11.38609 -11.35409 -11.14861 -10.86307 -10.64535 -10.44397 -10.41834 -10.35883 -9.81212 -8.94484 -8.91371 -8.56616 -7.94785 -6.42295 -4.04452 1.04120 1.39417 2.33104 3.12806 3.19991 3.26123 3.27747 3.37283 3.92066 4.23590 4.45874 4.69538 4.77485 4.87047 5.01539 5.05347 5.17841 5.21203 5.45733 5.50693 5.63772 5.67508 5.74656 5.84213 6.03650 6.08909 6.14107 6.18526 6.34141 6.73998 6.87673 7.39260 7.59814 7.96053 8.75912 9.06544 9.88047 10.75632 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.006141 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.768609 B = 4558.185910 C = 6644.517232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 C -0.146 4.146 4 O -0.266 6.266 5 C 0.183 3.817 6 C -0.218 4.218 7 C -0.057 4.057 8 C -0.086 4.086 9 Cl -0.075 7.075 10 C -0.024 4.024 11 C -0.113 4.113 12 C 0.436 3.564 13 O -0.530 6.530 14 O -0.209 6.209 15 C -0.371 4.371 16 H 0.097 0.903 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.944 3.056 20 H -0.273 1.273 21 H -0.278 1.278 22 H -0.266 1.266 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.134 0.866 32 H 0.158 0.842 33 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.988 1.608 14.730 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.012 3.988 3 C -0.203 4.203 4 O -0.177 6.177 5 C 0.135 3.865 6 C -0.237 4.237 7 C -0.076 4.076 8 C -0.113 4.113 9 Cl -0.046 7.046 10 C -0.043 4.043 11 C -0.115 4.115 12 C 0.284 3.716 13 O -0.427 6.427 14 O -0.117 6.117 15 C -0.447 4.447 16 H 0.115 0.885 17 C -0.164 4.164 18 N -0.497 5.497 19 Si 0.769 3.231 20 H -0.199 1.199 21 H -0.203 1.203 22 H -0.190 1.190 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.175 0.825 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.868 1.750 14.391 16.041 hybrid contribution 0.185 0.112 -0.459 0.508 sum -6.682 1.862 13.932 15.563 Atomic orbital electron populations 1.22400 0.95155 1.03046 1.03157 1.22538 0.94349 0.94275 0.87649 1.21805 1.02391 0.93351 1.02781 1.86513 1.79085 1.15041 1.37081 1.19050 0.91562 0.83494 0.92408 1.21074 1.08864 0.94601 0.99127 1.20851 0.96349 0.93137 0.97248 1.20610 1.08155 0.84790 0.97707 1.98345 1.97189 1.10758 1.98331 1.21397 0.93840 0.92528 0.96541 1.18772 1.06109 0.92194 0.94438 1.20301 0.81124 0.86072 0.84153 1.90687 1.56816 1.14573 1.80625 1.83895 1.63680 1.39670 1.24461 1.21286 1.38407 0.92551 0.92495 0.88509 1.25358 0.96544 0.96050 0.98448 1.69981 1.40916 1.07433 1.31345 0.85658 0.79232 0.79051 0.79187 1.19850 1.20305 1.19043 0.91150 0.91179 0.91865 0.91080 0.90896 0.91504 0.91142 0.84171 0.84791 0.82454 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.88 9.17 37.16 0.34 -1.54 16 2 C 0.07 0.85 2.85 -26.73 -0.08 0.78 16 3 C -0.15 -1.64 9.56 37.16 0.36 -1.28 16 4 O -0.27 -4.83 7.87 -40.59 -0.32 -5.15 16 5 C 0.18 3.28 6.61 -38.67 -0.26 3.02 16 6 C -0.22 -2.97 8.23 -39.48 -0.32 -3.29 16 7 C -0.06 -0.75 9.81 -39.49 -0.39 -1.13 16 8 C -0.09 -1.34 6.31 -39.56 -0.25 -1.59 16 9 Cl -0.07 -1.06 28.94 -51.86 -1.50 -2.56 16 10 C -0.02 -0.45 9.39 -39.13 -0.37 -0.82 16 11 C -0.11 -2.38 5.89 -104.86 -0.62 -3.00 16 12 C 0.44 11.47 7.83 34.44 0.27 11.74 16 13 O -0.53 -14.91 14.41 -26.63 -0.38 -15.29 16 14 O -0.21 -6.11 8.99 -21.78 -0.20 -6.30 16 15 C -0.37 -11.08 9.65 30.94 0.30 -10.79 16 16 H 0.10 2.91 6.86 -52.48 -0.36 2.55 16 17 C 0.04 1.14 5.49 -17.52 -0.10 1.04 16 18 N -0.86 -25.10 13.67 55.49 0.76 -24.34 16 19 Si 0.94 21.37 29.55 -169.99 -5.02 16.35 16 20 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 21 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.66 6.90 -51.93 -0.36 0.30 16 26 H 0.07 0.75 6.32 -51.93 -0.33 0.42 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.14 1.45 5.42 -52.48 -0.28 1.17 16 31 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 32 H 0.16 3.19 7.61 -52.48 -0.40 2.79 16 33 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 305.73 15.07 4.61 4.61 Total: -1.00 -33.25 305.73 -6.57 -39.82 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -3.40 Total: -0.27 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -1.11 Total: -6.86 kcal Atomic # 7 Polarization: -25.10 SS G_CDS: 0.76 Total: -24.34 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.90 Total: -26.75 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.50 Total: -2.56 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.25 -6.57 -39.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064115111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.773 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds