Wall clock time and date at job start Tue Mar 31 2020 06:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 O 1.42904 * 109.47063 * 240.00486 * 2 1 3 5 5 C 1.35666 * 116.99970 * 275.13587 * 4 2 1 6 6 C 1.38687 * 120.14162 * 5.42344 * 5 4 2 7 7 C 1.38056 * 120.10755 * 179.69485 * 6 5 4 8 8 C 1.38674 * 120.39731 * 0.60407 * 7 6 5 9 9 Cl 1.73590 * 119.86028 * 179.69577 * 8 7 6 10 10 C 1.37861 * 120.27872 * 359.67267 * 8 7 6 11 11 C 1.39805 * 119.88844 * 0.02617 * 10 8 7 12 12 C 1.47351 * 120.19547 * 179.97438 * 11 10 8 13 13 O 1.21542 * 119.99795 * 180.02562 * 12 11 10 14 14 O 1.34769 * 119.99724 * 0.02562 * 12 11 10 15 15 C 1.34868 * 116.99937 * 180.02562 * 14 12 11 16 16 H 1.08004 * 119.99913 * 359.97438 * 15 14 12 17 17 C 1.38800 * 120.00431 * 180.02562 * 15 14 12 18 18 N 1.31424 * 119.99409 * 359.97438 * 17 15 14 19 19 Si 1.86790 * 120.00111 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47326 * 90.00131 * 19 17 15 21 21 H 1.48509 * 109.47090 * 209.99973 * 19 17 15 22 22 H 1.48506 * 109.47497 * 329.99951 * 19 17 15 23 23 H 1.09002 * 109.47009 * 59.99595 * 1 2 3 24 24 H 1.09001 * 109.46706 * 299.99747 * 1 2 3 25 25 H 1.08998 * 109.46951 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47097 * 120.00367 * 2 1 3 27 27 H 1.09001 * 109.46732 * 60.00147 * 3 2 1 28 28 H 1.08997 * 109.47023 * 179.97438 * 3 2 1 29 29 H 1.08992 * 109.47440 * 300.00157 * 3 2 1 30 30 H 1.08010 * 119.94672 * 359.97438 * 6 5 4 31 31 H 1.08002 * 119.80470 * 180.27366 * 7 6 5 32 32 H 1.08003 * 120.05593 * 180.02562 * 10 8 7 33 33 H 0.97004 * 119.99624 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.1097 -2.0246 -1.0991 6 6 1.6559 -2.7023 0.0225 7 6 1.7556 -4.0777 0.0881 8 6 2.3201 -4.7910 -0.9587 9 17 2.4457 -6.5194 -0.8582 10 6 2.7816 -4.1332 -2.0789 11 6 2.6809 -2.7412 -2.1604 12 6 3.1725 -2.0312 -3.3543 13 8 3.0835 -0.8209 -3.4212 14 8 3.7207 -2.7239 -4.3721 15 6 4.1510 -2.0134 -5.4346 16 1 4.0479 -0.9384 -5.4429 17 6 4.7254 -2.6638 -6.5179 18 7 4.8503 -3.9721 -6.5080 19 14 5.3206 -1.6798 -7.9898 20 1 6.7401 -1.2940 -7.7861 21 1 5.2038 -2.5065 -9.2180 22 1 4.4912 -0.4566 -8.1358 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8899 30 1 1.2197 -2.1536 0.8443 31 1 1.3966 -4.6010 0.9620 32 1 3.2203 -4.6924 -2.8922 33 1 5.2521 -4.4267 -7.2649 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064115111.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:27 Heat of formation + Delta-G solvation = -121.730487 kcal Electronic energy + Delta-G solvation = -19959.907319 eV Core-core repulsion = 16590.567131 eV Total energy + Delta-G solvation = -3369.340188 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.76206 -40.56365 -38.93575 -37.34226 -37.04619 -34.33748 -34.14784 -32.52628 -30.71661 -28.16494 -27.71577 -25.25350 -24.37075 -22.10361 -21.84984 -19.86346 -19.53830 -18.61596 -17.47537 -16.93408 -16.80048 -16.28245 -16.18102 -16.12876 -15.69385 -15.11586 -14.59639 -14.41877 -14.09337 -13.65050 -13.56109 -13.40029 -13.28138 -13.18017 -12.98487 -12.50755 -12.43544 -12.28364 -12.17932 -12.04059 -11.98444 -11.74917 -11.48997 -10.98801 -10.71119 -10.28035 -9.24402 -8.56304 -6.33266 -0.35335 0.09485 1.09798 1.32438 1.35598 1.50393 1.73021 2.08370 2.14188 2.56654 2.68165 3.01253 3.61823 3.73260 3.86997 3.93094 4.01056 4.13282 4.20534 4.51607 4.63675 4.70522 4.77044 4.82610 4.85551 4.94166 5.01975 5.06471 5.17736 5.27526 5.29105 5.44054 5.81001 6.40810 6.62919 6.88198 7.74884 8.64672 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.012622 B = 0.006141 C = 0.004213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.768609 B = 4558.185910 C = 6644.517232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.054 3.946 3 C -0.146 4.146 4 O -0.305 6.305 5 C 0.184 3.816 6 C -0.197 4.197 7 C -0.024 4.024 8 C -0.089 4.089 9 Cl -0.059 7.059 10 C -0.031 4.031 11 C -0.162 4.162 12 C 0.436 3.564 13 O -0.559 6.559 14 O -0.239 6.239 15 C -0.418 4.418 16 H 0.081 0.919 17 C -0.004 4.004 18 N -0.899 5.899 19 Si 1.019 2.981 20 H -0.259 1.259 21 H -0.258 1.258 22 H -0.264 1.264 23 H 0.049 0.951 24 H 0.106 0.894 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.187 0.813 31 H 0.185 0.815 32 H 0.129 0.871 33 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 1.485 17.595 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.001 4.001 3 C -0.203 4.203 4 O -0.218 6.218 5 C 0.135 3.865 6 C -0.215 4.215 7 C -0.043 4.043 8 C -0.115 4.115 9 Cl -0.030 7.030 10 C -0.050 4.050 11 C -0.164 4.164 12 C 0.285 3.715 13 O -0.457 6.457 14 O -0.147 6.147 15 C -0.494 4.494 16 H 0.098 0.902 17 C -0.204 4.204 18 N -0.536 5.536 19 Si 0.838 3.162 20 H -0.183 1.183 21 H -0.181 1.181 22 H -0.189 1.189 23 H 0.068 0.932 24 H 0.125 0.875 25 H 0.085 0.915 26 H 0.118 0.882 27 H 0.131 0.869 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.204 0.796 31 H 0.202 0.798 32 H 0.147 0.853 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -8.130 1.614 17.287 19.171 hybrid contribution 0.461 0.142 -1.091 1.193 sum -7.669 1.756 16.195 18.005 Atomic orbital electron populations 1.22392 0.93307 1.03555 1.03993 1.23038 0.95872 0.94394 0.86778 1.21876 1.01505 0.93167 1.03771 1.86484 1.79398 1.15409 1.40467 1.19232 0.90873 0.83854 0.92518 1.21519 1.06903 0.94861 0.98267 1.21428 0.92774 0.92892 0.97186 1.20670 1.07921 0.85740 0.97199 1.98354 1.97140 1.09337 1.98214 1.21128 0.94765 0.91763 0.97388 1.18612 1.10448 0.93267 0.94056 1.21375 0.79203 0.86233 0.84719 1.90625 1.57716 1.15974 1.81418 1.83925 1.65118 1.40353 1.25332 1.21460 1.41453 0.92265 0.94225 0.90172 1.26571 0.95537 0.97338 1.00950 1.70069 1.41620 1.09111 1.32825 0.84612 0.79018 0.77488 0.75116 1.18326 1.18139 1.18853 0.93156 0.87520 0.91478 0.88173 0.86854 0.92989 0.93137 0.79618 0.79801 0.85347 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.09 9.17 71.99 0.66 -2.43 16 2 C 0.05 1.22 2.85 30.60 0.09 1.31 16 3 C -0.15 -3.07 9.56 71.98 0.69 -2.38 16 4 O -0.31 -11.11 7.87 -68.89 -0.54 -11.65 16 5 C 0.18 6.46 6.61 22.86 0.15 6.61 16 6 C -0.20 -4.56 8.23 22.33 0.18 -4.37 16 7 C -0.02 -0.53 9.81 22.33 0.22 -0.31 16 8 C -0.09 -2.60 6.31 22.28 0.14 -2.46 16 9 Cl -0.06 -1.56 28.94 -2.72 -0.08 -1.64 16 10 C -0.03 -1.22 9.39 22.56 0.21 -1.01 16 11 C -0.16 -7.14 5.89 -20.02 -0.12 -7.26 16 12 C 0.44 24.69 7.83 70.22 0.55 25.24 16 13 O -0.56 -33.80 14.41 26.71 0.38 -33.41 16 14 O -0.24 -15.06 8.99 10.83 0.10 -14.97 16 15 C -0.42 -26.74 9.65 67.95 0.66 -26.08 16 16 H 0.08 5.20 6.86 -2.91 -0.02 5.18 16 17 C 0.00 -0.21 5.49 84.89 0.47 0.26 16 18 N -0.90 -54.62 13.67 21.63 0.30 -54.33 16 19 Si 1.02 44.94 29.55 68.60 2.03 46.96 16 20 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.07 1.13 6.90 -2.39 -0.02 1.11 16 26 H 0.10 1.65 6.32 -2.39 -0.02 1.63 16 27 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.19 2.62 5.42 -2.91 -0.02 2.61 16 31 H 0.18 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.13 5.68 7.61 -2.91 -0.02 5.66 16 33 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -80.61 305.73 7.22 -73.39 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: 1.14 Total: 8.52 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 3.90 Total: -12.88 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.30 Total: -54.33 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -0.06 Total: -60.03 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 17 Polarization: -1.56 SS G_CDS: -0.08 Total: -1.64 kcal Total: -80.61 7.22 -73.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064115111.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.338 kcal (2) G-P(sol) polarization free energy of solvation -80.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds