Wall clock time and date at job start Tue Mar 31 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86803 * 119.99602 * 2 1 4 4 H 1.48494 * 109.47521 * 270.00568 * 3 2 1 5 5 H 1.48500 * 109.46984 * 30.00742 * 3 2 1 6 6 H 1.48499 * 109.46988 * 150.00291 * 3 2 1 7 7 C 1.38746 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00209 * 179.97438 * 7 2 1 9 9 O 1.34925 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.34309 * 117.00272 * 180.02562 * 9 7 2 11 11 O 1.21215 * 119.99576 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00178 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.47275 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46935 * 179.97438 * 13 12 10 15 15 O 1.42898 * 109.46896 * 179.97438 * 14 13 12 16 16 C 1.35929 * 117.00101 * 180.02562 * 15 14 13 17 17 C 1.38701 * 120.05648 * 359.95940 * 16 15 14 18 18 C 1.38153 * 119.95853 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.07157 * 0.02562 * 18 17 16 20 20 C 1.38238 * 120.11971 * 0.02562 * 19 18 17 21 21 C 1.38255 * 120.04624 * 359.94924 * 20 19 18 22 22 Cl 1.73604 * 120.04140 * 180.02562 * 21 20 19 23 23 H 0.96999 * 120.00484 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47134 * 59.99690 * 12 10 9 25 25 H 1.09004 * 109.46843 * 300.00144 * 12 10 9 26 26 H 1.08993 * 109.46849 * 59.99531 * 13 12 10 27 27 H 1.09001 * 109.46900 * 299.99952 * 13 12 10 28 28 H 1.09004 * 109.47148 * 60.00009 * 14 13 12 29 29 H 1.08996 * 109.47021 * 299.99617 * 14 13 12 30 30 H 1.08003 * 120.02367 * 0.04181 * 17 16 15 31 31 H 1.08001 * 119.96476 * 180.29683 * 18 17 16 32 32 H 1.08006 * 119.93616 * 179.97438 * 19 18 17 33 33 H 1.08008 * 119.97717 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0467 -1.4000 5 1 1.4458 2.6526 0.7002 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2015 -0.0005 8 1 3.0883 -1.2015 -0.0010 9 8 1.3338 -2.3701 -0.0005 10 6 2.0653 -3.4964 -0.0005 11 8 3.2758 -3.4328 -0.0010 12 6 1.3813 -4.8392 0.0000 13 6 2.4351 -5.9485 -0.0007 14 6 1.7406 -7.3117 0.0005 15 8 2.7248 -8.3477 -0.0008 16 6 2.2718 -9.6293 -0.0005 17 6 0.9084 -9.8842 0.0019 18 6 0.4503 -11.1876 0.0028 19 6 1.3495 -12.2381 0.0018 20 6 2.7090 -11.9876 0.0004 21 6 3.1729 -10.6852 -0.0009 22 17 4.8802 -10.3708 -0.0033 23 1 -0.4851 0.8400 0.0004 24 1 0.7581 -4.9299 -0.8897 25 1 0.7589 -4.9295 0.8903 26 1 3.0586 -5.8578 0.8887 27 1 3.0572 -5.8580 -0.8912 28 1 1.1168 -7.4025 -0.8888 29 1 1.1189 -7.4019 0.8912 30 1 0.2054 -9.0644 0.0029 31 1 -0.6113 -11.3862 -0.0002 32 1 0.9889 -13.2562 0.0029 33 1 3.4092 -12.8099 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065332694.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:08 Heat of formation + Delta-G solvation = -110.427804 kcal Electronic energy + Delta-G solvation = -18693.022234 eV Core-core repulsion = 15324.172167 eV Total energy + Delta-G solvation = -3368.850067 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40361 -39.02544 -37.83853 -36.50029 -35.45781 -33.47868 -32.13593 -31.11682 -30.15658 -27.55687 -25.21605 -23.43369 -22.65297 -21.51827 -19.78247 -18.49808 -17.72756 -16.86543 -16.47374 -16.41524 -16.04229 -15.09473 -14.94680 -14.55809 -14.34009 -14.17526 -13.86609 -13.54060 -12.89716 -12.41936 -12.29087 -12.05568 -11.72049 -11.67793 -11.53428 -11.45381 -11.11391 -11.04400 -10.91215 -10.55146 -10.43350 -10.36402 -9.80772 -9.19875 -9.04200 -8.58049 -8.43512 -6.41430 -4.09307 0.83666 1.03546 2.01918 2.88097 3.11269 3.19425 3.25582 3.32970 3.53013 3.95906 4.41704 4.52391 4.58487 4.79435 4.90265 4.93362 5.09022 5.11311 5.11749 5.24384 5.41155 5.46503 5.57986 5.77856 5.85232 5.89906 6.09333 6.25669 6.31065 6.44970 6.78649 7.12183 7.39962 7.95533 8.71607 9.07757 9.85188 10.76729 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.037834 B = 0.002671 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.906082 B =10480.101962 C =11194.259912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.041 3.959 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.382 4.382 8 H 0.095 0.905 9 O -0.216 6.216 10 C 0.397 3.603 11 O -0.555 6.555 12 C -0.099 4.099 13 C -0.103 4.103 14 C 0.059 3.941 15 O -0.299 6.299 16 C 0.146 3.854 17 C -0.201 4.201 18 C -0.075 4.075 19 C -0.153 4.153 20 C -0.074 4.074 21 C -0.074 4.074 22 Cl -0.057 7.057 23 H 0.269 0.731 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.139 0.861 31 H 0.131 0.869 32 H 0.131 0.869 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 -23.418 0.009 23.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.162 4.162 3 Si 0.768 3.232 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.191 1.191 7 C -0.458 4.458 8 H 0.113 0.887 9 O -0.123 6.123 10 C 0.244 3.756 11 O -0.453 6.453 12 C -0.137 4.137 13 C -0.141 4.141 14 C -0.016 4.016 15 O -0.212 6.212 16 C 0.099 3.901 17 C -0.219 4.219 18 C -0.093 4.093 19 C -0.171 4.171 20 C -0.093 4.093 21 C -0.101 4.101 22 Cl -0.028 7.028 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.112 0.888 26 H 0.101 0.899 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.157 0.843 31 H 0.149 0.851 32 H 0.149 0.851 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.143 -23.096 0.014 23.096 hybrid contribution 0.230 0.852 -0.010 0.883 sum 0.373 -22.244 0.004 22.247 Atomic orbital electron populations 1.69989 1.05998 1.27667 1.46758 1.25332 0.95816 0.98871 0.96220 0.85679 0.79058 0.79763 0.78739 1.19880 1.20330 1.19100 1.21227 0.92386 0.79875 1.52346 0.88689 1.83870 1.39405 1.13420 1.75621 1.23026 0.86692 0.87235 0.78679 1.90572 1.15746 1.88131 1.50824 1.20907 0.98264 0.89864 1.04709 1.21242 0.98192 0.89128 1.05499 1.22980 0.90701 0.86239 1.01677 1.86188 1.36062 1.11513 1.87456 1.18763 0.91652 0.84472 0.95239 1.21330 0.93591 0.98829 1.08195 1.21073 1.00176 0.91781 0.96272 1.21010 0.92243 0.99631 1.04245 1.20920 0.96343 0.94046 0.97987 1.20254 0.85233 0.92786 1.11857 1.98379 1.11234 1.96130 1.97060 0.92097 0.88852 0.88846 0.89924 0.89919 0.91528 0.91518 0.84314 0.85144 0.85082 0.84480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.43 13.67 55.48 0.76 -24.68 16 2 C 0.04 1.17 5.49 -17.53 -0.10 1.08 16 3 Si 0.94 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 5 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 6 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.38 -11.37 9.64 30.92 0.30 -11.07 16 8 H 0.10 2.85 6.86 -52.48 -0.36 2.49 16 9 O -0.22 -6.17 9.75 -20.71 -0.20 -6.37 16 10 C 0.40 9.64 7.91 36.00 0.28 9.92 16 11 O -0.56 -14.88 15.22 -19.06 -0.29 -15.17 16 12 C -0.10 -1.66 5.81 -27.88 -0.16 -1.82 16 13 C -0.10 -1.55 4.87 -26.73 -0.13 -1.68 16 14 C 0.06 0.69 4.74 37.16 0.18 0.86 16 15 O -0.30 -4.03 9.60 -19.52 -0.19 -4.21 16 16 C 0.15 1.74 6.68 -39.20 -0.26 1.48 16 17 C -0.20 -1.92 9.04 -39.44 -0.36 -2.28 16 18 C -0.07 -0.59 10.04 -39.60 -0.40 -0.98 16 19 C -0.15 -1.15 10.04 -39.56 -0.40 -1.54 16 20 C -0.07 -0.65 9.83 -39.58 -0.39 -1.04 16 21 C -0.07 -0.84 6.33 -39.36 -0.25 -1.09 16 22 Cl -0.06 -0.68 28.51 -51.86 -1.48 -2.16 16 23 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 26 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 27 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 28 H 0.07 0.67 7.66 -51.93 -0.40 0.27 16 29 H 0.07 0.67 7.66 -51.93 -0.40 0.27 16 30 H 0.14 1.11 6.30 -52.48 -0.33 0.78 16 31 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 33 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 LS Contribution 311.48 15.07 4.69 4.69 Total: -1.00 -34.10 311.48 -6.99 -41.09 By element: Atomic # 1 Polarization: 2.16 SS G_CDS: -3.58 Total: -1.42 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: -1.68 Total: -8.17 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.76 Total: -24.68 kcal Atomic # 8 Polarization: -25.07 SS G_CDS: -0.68 Total: -25.75 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.48 Total: -2.16 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.10 -6.99 -41.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065332694.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.339 kcal (2) G-P(sol) polarization free energy of solvation -34.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds