Wall clock time and date at job start Tue Mar 31 2020 05:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86803 * 119.99602 * 2 1 4 4 H 1.48494 * 109.47521 * 270.00568 * 3 2 1 5 5 H 1.48500 * 109.46984 * 30.00742 * 3 2 1 6 6 H 1.48499 * 109.46988 * 150.00291 * 3 2 1 7 7 C 1.38746 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00209 * 179.97438 * 7 2 1 9 9 O 1.34925 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.34309 * 117.00272 * 180.02562 * 9 7 2 11 11 O 1.21215 * 119.99576 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00178 * 179.97438 * 10 9 7 13 13 C 1.53000 * 109.47275 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46935 * 179.97438 * 13 12 10 15 15 O 1.42898 * 109.46896 * 179.97438 * 14 13 12 16 16 C 1.35929 * 117.00101 * 180.02562 * 15 14 13 17 17 C 1.38701 * 120.05648 * 359.95940 * 16 15 14 18 18 C 1.38153 * 119.95853 * 180.02562 * 17 16 15 19 19 C 1.38285 * 120.07157 * 0.02562 * 18 17 16 20 20 C 1.38238 * 120.11971 * 0.02562 * 19 18 17 21 21 C 1.38255 * 120.04624 * 359.94924 * 20 19 18 22 22 Cl 1.73604 * 120.04140 * 180.02562 * 21 20 19 23 23 H 0.96999 * 120.00484 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.47134 * 59.99690 * 12 10 9 25 25 H 1.09004 * 109.46843 * 300.00144 * 12 10 9 26 26 H 1.08993 * 109.46849 * 59.99531 * 13 12 10 27 27 H 1.09001 * 109.46900 * 299.99952 * 13 12 10 28 28 H 1.09004 * 109.47148 * 60.00009 * 14 13 12 29 29 H 1.08996 * 109.47021 * 299.99617 * 14 13 12 30 30 H 1.08003 * 120.02367 * 0.04181 * 17 16 15 31 31 H 1.08001 * 119.96476 * 180.29683 * 18 17 16 32 32 H 1.08006 * 119.93616 * 179.97438 * 19 18 17 33 33 H 1.08008 * 119.97717 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 2.4957 2.0467 -1.4000 5 1 1.4458 2.6526 0.7002 6 1 3.5459 1.4403 0.7000 7 6 2.0083 -1.2015 -0.0005 8 1 3.0883 -1.2015 -0.0010 9 8 1.3338 -2.3701 -0.0005 10 6 2.0653 -3.4964 -0.0005 11 8 3.2758 -3.4328 -0.0010 12 6 1.3813 -4.8392 0.0000 13 6 2.4351 -5.9485 -0.0007 14 6 1.7406 -7.3117 0.0005 15 8 2.7248 -8.3477 -0.0008 16 6 2.2718 -9.6293 -0.0005 17 6 0.9084 -9.8842 0.0019 18 6 0.4503 -11.1876 0.0028 19 6 1.3495 -12.2381 0.0018 20 6 2.7090 -11.9876 0.0004 21 6 3.1729 -10.6852 -0.0009 22 17 4.8802 -10.3708 -0.0033 23 1 -0.4851 0.8400 0.0004 24 1 0.7581 -4.9299 -0.8897 25 1 0.7589 -4.9295 0.8903 26 1 3.0586 -5.8578 0.8887 27 1 3.0572 -5.8580 -0.8912 28 1 1.1168 -7.4025 -0.8888 29 1 1.1189 -7.4019 0.8912 30 1 0.2054 -9.0644 0.0029 31 1 -0.6113 -11.3862 -0.0002 32 1 0.9889 -13.2562 0.0029 33 1 3.4092 -12.8099 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065332694.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:08 Heat of formation + Delta-G solvation = -130.860883 kcal Electronic energy + Delta-G solvation = -18693.908279 eV Core-core repulsion = 15324.172167 eV Total energy + Delta-G solvation = -3369.736112 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24328 -40.96520 -38.66710 -37.43822 -37.31648 -34.86045 -34.29502 -31.78775 -30.95192 -28.90658 -27.13488 -24.46440 -23.42040 -22.58101 -21.43053 -19.88614 -19.35216 -18.51345 -17.55259 -17.32771 -16.99684 -16.70207 -16.42816 -16.20973 -15.55087 -15.11468 -14.85033 -14.68507 -14.15641 -13.99237 -13.63853 -13.25880 -13.13924 -12.81570 -12.61311 -12.61184 -12.38272 -12.24920 -12.17310 -12.02425 -11.96434 -11.74051 -11.61559 -11.07104 -10.70599 -9.88395 -9.19357 -8.55308 -6.35088 0.16214 0.34643 1.22169 1.30266 1.33570 1.50349 1.64724 1.93432 2.19116 2.66760 2.86959 2.96052 3.77289 3.82683 3.88123 3.95772 4.11773 4.20419 4.35963 4.40482 4.41088 4.49473 4.55245 4.80075 4.87908 5.00067 5.12781 5.18125 5.20218 5.29234 5.46825 5.73194 5.82781 6.30922 6.67597 6.90345 7.75711 8.65402 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.037834 B = 0.002671 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.906082 B =10480.101962 C =11194.259912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.003 4.003 3 Si 1.016 2.984 4 H -0.260 1.260 5 H -0.258 1.258 6 H -0.266 1.266 7 C -0.423 4.423 8 H 0.079 0.921 9 O -0.245 6.245 10 C 0.392 3.608 11 O -0.587 6.587 12 C -0.086 4.086 13 C -0.096 4.096 14 C 0.066 3.934 15 O -0.326 6.326 16 C 0.118 3.882 17 C -0.205 4.205 18 C -0.073 4.073 19 C -0.145 4.145 20 C -0.078 4.078 21 C -0.097 4.097 22 Cl -0.077 7.077 23 H 0.279 0.721 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.163 0.837 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.993 -24.656 -0.010 24.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.204 4.204 3 Si 0.834 3.166 4 H -0.185 1.185 5 H -0.182 1.182 6 H -0.190 1.190 7 C -0.499 4.499 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.241 3.759 11 O -0.486 6.486 12 C -0.124 4.124 13 C -0.133 4.133 14 C -0.008 4.008 15 O -0.240 6.240 16 C 0.071 3.929 17 C -0.224 4.224 18 C -0.090 4.090 19 C -0.164 4.164 20 C -0.097 4.097 21 C -0.124 4.124 22 Cl -0.049 7.049 23 H 0.089 0.911 24 H 0.140 0.860 25 H 0.141 0.859 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.181 0.819 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.529 -24.369 -0.007 24.417 hybrid contribution 0.718 1.054 -0.004 1.276 sum -0.811 -23.314 -0.011 23.328 Atomic orbital electron populations 1.70059 1.07530 1.29395 1.46944 1.26499 0.96901 1.02259 0.94698 0.84656 0.77660 0.74710 0.79534 1.18457 1.18233 1.19031 1.21386 0.92075 0.81374 1.55028 0.90357 1.83892 1.40322 1.14241 1.76895 1.24549 0.86722 0.88614 0.76037 1.90542 1.17555 1.88766 1.51696 1.21033 0.98553 0.85400 1.07393 1.21096 0.97591 0.91035 1.03614 1.22874 0.90131 0.84016 1.03806 1.86118 1.37095 1.12548 1.88269 1.19038 0.92912 0.83701 0.97198 1.21596 0.92681 1.00327 1.07789 1.21500 1.01876 0.91012 0.94654 1.21442 0.91455 1.01253 1.02210 1.21225 0.97603 0.93441 0.97426 1.20575 0.84323 0.93940 1.13573 1.98363 1.12925 1.96307 1.97261 0.91143 0.85951 0.85947 0.91907 0.91893 0.89338 0.89331 0.82811 0.82097 0.81940 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.15 13.67 21.62 0.30 -52.85 16 2 C 0.00 -0.19 5.49 84.87 0.47 0.28 16 3 Si 1.02 43.75 29.55 68.60 2.03 45.78 16 4 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 5 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.42 -25.92 9.64 67.94 0.66 -25.27 16 8 H 0.08 4.91 6.86 -2.91 -0.02 4.89 16 9 O -0.25 -14.37 9.75 14.84 0.14 -14.22 16 10 C 0.39 19.44 7.91 71.23 0.56 20.00 16 11 O -0.59 -32.66 15.22 20.76 0.32 -32.34 16 12 C -0.09 -2.80 5.81 29.85 0.17 -2.62 16 13 C -0.10 -2.85 4.87 30.59 0.15 -2.70 16 14 C 0.07 1.44 4.74 71.98 0.34 1.78 16 15 O -0.33 -8.68 9.60 -92.75 -0.89 -9.57 16 16 C 0.12 2.69 6.68 22.52 0.15 2.84 16 17 C -0.21 -3.40 9.04 22.36 0.20 -3.20 16 18 C -0.07 -0.87 10.04 22.26 0.22 -0.65 16 19 C -0.15 -1.69 10.04 22.28 0.22 -1.46 16 20 C -0.08 -1.24 9.83 22.27 0.22 -1.02 16 21 C -0.10 -2.15 6.33 22.41 0.14 -2.01 16 22 Cl -0.08 -1.90 28.51 -2.72 -0.08 -1.98 16 23 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 24 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 25 H 0.12 3.32 8.14 -2.38 -0.02 3.30 16 26 H 0.06 2.10 8.10 -2.39 -0.02 2.08 16 27 H 0.06 2.10 8.10 -2.39 -0.02 2.08 16 28 H 0.09 1.54 7.66 -2.39 -0.02 1.52 16 29 H 0.09 1.54 7.66 -2.39 -0.02 1.52 16 30 H 0.15 1.96 6.30 -2.91 -0.02 1.94 16 31 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 32 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 33 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -77.45 311.48 6.45 -71.00 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 1.13 Total: 8.20 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 3.51 Total: -14.02 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: 0.30 Total: -52.85 kcal Atomic # 8 Polarization: -55.71 SS G_CDS: -0.43 Total: -56.14 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -77.45 6.45 -71.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065332694.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.860 kcal (2) G-P(sol) polarization free energy of solvation -77.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds