Wall clock time and date at job start Tue Mar 31 2020 05:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46625 * 2 1 4 4 C 1.46502 * 120.00461 * 269.99517 * 3 2 1 5 5 C 1.50697 * 109.47257 * 270.00728 * 4 3 2 6 6 H 1.08003 * 120.00039 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00129 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99985 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99480 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46854 * 90.00435 * 9 7 5 11 11 H 1.48501 * 109.46806 * 209.99666 * 9 7 5 12 12 H 1.48496 * 109.47363 * 329.99904 * 9 7 5 13 13 C 1.39006 * 119.99643 * 90.00328 * 3 2 1 14 14 C 1.39111 * 119.69915 * 5.29247 * 13 3 2 15 15 C 1.38333 * 119.11771 * 180.23540 * 14 13 3 16 16 C 1.38840 * 118.51406 * 359.47752 * 15 14 13 17 17 C 1.38154 * 119.32128 * 0.27484 * 16 15 14 18 18 Br 1.89099 * 119.58218 * 180.02562 * 17 16 15 19 19 N 1.32044 * 120.83246 * 359.97438 * 17 16 15 20 20 H 1.09002 * 109.46845 * 60.00555 * 1 2 3 21 21 H 1.08999 * 109.46703 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47269 * 299.99808 * 1 2 3 23 23 H 1.08998 * 109.47269 * 240.00192 * 2 1 3 24 24 H 1.08992 * 109.46950 * 119.99994 * 2 1 3 25 25 H 1.09004 * 109.46514 * 30.00310 * 4 3 2 26 26 H 1.08995 * 109.46957 * 150.00254 * 4 3 2 27 27 H 0.97002 * 119.99837 * 179.97438 * 8 7 5 28 28 H 1.07993 * 120.44503 * 359.97438 * 14 13 3 29 29 H 1.08002 * 120.74533 * 179.75704 * 15 14 13 30 30 H 1.08004 * 120.33549 * 180.26184 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 -1.2687 5 6 3.6858 1.8352 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1491 2.3899 -2.8779 8 7 5.3913 2.1836 -3.2572 9 14 3.0124 3.4343 -3.9297 10 1 3.1147 4.8548 -3.5089 11 1 3.4059 3.3111 -5.3563 12 1 1.6130 2.9673 -3.7601 13 6 2.2499 2.0365 1.2039 14 6 2.1226 1.3417 2.4023 15 6 2.3512 2.0068 3.5935 16 6 2.7115 3.3468 3.5459 17 6 2.8248 3.9738 2.3200 18 35 3.3158 5.7984 2.2465 19 7 2.5956 3.3147 1.1990 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.5817 1.6878 -2.0284 26 1 2.0955 3.1411 -1.1383 27 1 5.7172 2.5736 -4.0834 28 1 1.8450 0.2981 2.4030 29 1 2.2560 1.4940 4.5393 30 1 2.9010 3.8935 4.4579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069018039.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:13 Heat of formation + Delta-G solvation = 49.078450 kcal Electronic energy + Delta-G solvation = -14872.179632 eV Core-core repulsion = 12328.111341 eV Total energy + Delta-G solvation = -2544.068292 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.86447 -36.53675 -32.81552 -32.26109 -31.69542 -30.11909 -29.20931 -26.82423 -23.58122 -23.12045 -21.87525 -20.18320 -17.08465 -16.85698 -16.18632 -15.37656 -14.57077 -14.39867 -14.34278 -13.69326 -13.04534 -12.93468 -12.67314 -12.28014 -12.00056 -11.67224 -11.33438 -11.07118 -10.75171 -10.63168 -10.47720 -10.21656 -10.07928 -9.69938 -9.42315 -8.98422 -8.84518 -8.56305 -6.90583 -6.07122 -4.05423 1.43220 1.74580 1.81391 3.30259 3.35907 3.38556 3.63309 4.20961 4.41142 4.93662 5.18556 5.26978 5.39995 5.44716 5.47795 5.54553 5.62360 5.76431 5.97178 6.12326 6.19494 6.39500 6.51328 6.61709 6.79274 7.01821 7.59459 7.62144 8.02152 8.48238 8.61008 8.96726 9.53311 11.06322 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.008096 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.059346 B = 3457.525487 C = 4850.188417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.120 3.880 3 N -0.579 5.579 4 C 0.223 3.777 5 C -0.526 4.526 6 H 0.072 0.928 7 C 0.074 3.926 8 N -0.898 5.898 9 Si 0.874 3.126 10 H -0.272 1.272 11 H -0.286 1.286 12 H -0.267 1.267 13 C 0.432 3.568 14 C -0.244 4.244 15 C -0.030 4.030 16 C -0.226 4.226 17 C 0.184 3.816 18 Br -0.030 7.030 19 N -0.507 5.507 20 H 0.058 0.942 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.026 0.974 26 H 0.042 0.958 27 H 0.264 0.736 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.434 1.216 13.453 15.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.004 4.004 3 N -0.287 5.287 4 C 0.102 3.898 5 C -0.565 4.565 6 H 0.091 0.909 7 C -0.129 4.129 8 N -0.537 5.537 9 Si 0.701 3.299 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.192 1.192 13 C 0.193 3.807 14 C -0.271 4.271 15 C -0.056 4.056 16 C -0.253 4.253 17 C -0.035 4.035 18 Br 0.054 6.946 19 N -0.226 5.226 20 H 0.077 0.923 21 H 0.080 0.920 22 H 0.072 0.928 23 H 0.104 0.896 24 H 0.087 0.913 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.151 0.849 29 H 0.151 0.849 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.084 2.235 12.215 14.817 hybrid contribution -0.499 -0.227 0.034 0.550 sum -8.583 2.008 12.249 15.091 Atomic orbital electron populations 1.22237 0.96793 1.01505 1.02301 1.21413 0.93253 0.82626 1.03090 1.46843 1.65824 1.12263 1.03720 1.19688 0.97037 0.93512 0.79579 1.21335 0.95332 1.32772 1.07020 0.90946 1.24828 0.94928 0.95782 0.97320 1.69897 1.15136 1.45081 1.23542 0.86886 0.81477 0.81793 0.79766 1.19753 1.21169 1.19160 1.18270 0.88590 0.87248 0.86583 1.21498 1.12210 1.01366 0.91993 1.21155 0.93489 0.93256 0.97747 1.21414 1.10701 0.96259 0.96926 1.22259 0.98594 0.92217 0.90479 1.96687 1.90938 1.07837 1.99104 1.66915 1.18244 1.08192 1.29217 0.92319 0.91965 0.92846 0.89589 0.91258 0.95624 0.94018 0.92619 0.84884 0.84861 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 10.24 37.16 0.38 -1.85 16 2 C 0.12 1.91 5.98 -4.04 -0.02 1.89 16 3 N -0.58 -11.90 2.57 -175.21 -0.45 -12.35 16 4 C 0.22 5.40 4.29 -5.19 -0.02 5.38 16 5 C -0.53 -15.02 9.94 -34.44 -0.34 -15.37 16 6 H 0.07 2.29 8.06 -52.48 -0.42 1.87 16 7 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 8 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 9 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 13 C 0.43 8.63 7.37 -155.02 -1.14 7.49 16 14 C -0.24 -3.86 9.27 -39.22 -0.36 -4.22 16 15 C -0.03 -0.41 10.16 -39.32 -0.40 -0.81 16 16 C -0.23 -3.39 9.82 -39.39 -0.39 -3.78 16 17 C 0.18 3.39 7.16 -17.49 -0.13 3.26 16 18 Br -0.03 -0.49 33.86 -68.01 -2.30 -2.79 16 19 N -0.51 -10.97 9.04 -10.83 -0.10 -11.07 16 20 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 21 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 24 H 0.07 0.95 5.97 -51.93 -0.31 0.64 16 25 H 0.03 0.61 7.13 -51.93 -0.37 0.24 16 26 H 0.04 1.08 6.73 -51.93 -0.35 0.73 16 27 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 28 H 0.13 1.75 6.02 -52.49 -0.32 1.44 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 278.18 15.07 4.19 4.19 Total: -1.00 -32.09 278.18 -8.55 -40.63 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -3.47 Total: -2.71 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -2.52 Total: -5.95 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.23 Total: -50.44 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.30 Total: -2.79 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -32.09 -8.55 -40.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069018039.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.710 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds