Wall clock time and date at job start Tue Mar 31 2020 05:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46503 * 109.46625 * 2 1 4 4 C 1.46502 * 120.00461 * 269.99517 * 3 2 1 5 5 C 1.50697 * 109.47257 * 270.00728 * 4 3 2 6 6 H 1.08003 * 120.00039 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00129 * 179.97438 * 5 4 3 8 8 N 1.31510 * 119.99985 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99480 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46854 * 90.00435 * 9 7 5 11 11 H 1.48501 * 109.46806 * 209.99666 * 9 7 5 12 12 H 1.48496 * 109.47363 * 329.99904 * 9 7 5 13 13 C 1.39006 * 119.99643 * 90.00328 * 3 2 1 14 14 C 1.39111 * 119.69915 * 5.29247 * 13 3 2 15 15 C 1.38333 * 119.11771 * 180.23540 * 14 13 3 16 16 C 1.38840 * 118.51406 * 359.47752 * 15 14 13 17 17 C 1.38154 * 119.32128 * 0.27484 * 16 15 14 18 18 Br 1.89099 * 119.58218 * 180.02562 * 17 16 15 19 19 N 1.32044 * 120.83246 * 359.97438 * 17 16 15 20 20 H 1.09002 * 109.46845 * 60.00555 * 1 2 3 21 21 H 1.08999 * 109.46703 * 179.97438 * 1 2 3 22 22 H 1.08998 * 109.47269 * 299.99808 * 1 2 3 23 23 H 1.08998 * 109.47269 * 240.00192 * 2 1 3 24 24 H 1.08992 * 109.46950 * 119.99994 * 2 1 3 25 25 H 1.09004 * 109.46514 * 30.00310 * 4 3 2 26 26 H 1.08995 * 109.46957 * 150.00254 * 4 3 2 27 27 H 0.97002 * 119.99837 * 179.97438 * 8 7 5 28 28 H 1.07993 * 120.44503 * 359.97438 * 14 13 3 29 29 H 1.08002 * 120.74533 * 179.75704 * 15 14 13 30 30 H 1.08004 * 120.33549 * 180.26184 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0720 -1.2687 5 6 3.6858 1.8352 -1.7037 6 1 4.3429 1.2310 -1.0957 7 6 4.1491 2.3899 -2.8779 8 7 5.3913 2.1836 -3.2572 9 14 3.0124 3.4343 -3.9297 10 1 3.1147 4.8548 -3.5089 11 1 3.4059 3.3111 -5.3563 12 1 1.6130 2.9673 -3.7601 13 6 2.2499 2.0365 1.2039 14 6 2.1226 1.3417 2.4023 15 6 2.3512 2.0068 3.5935 16 6 2.7115 3.3468 3.5459 17 6 2.8248 3.9738 2.3200 18 35 3.3158 5.7984 2.2465 19 7 2.5956 3.3147 1.1990 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5138 -0.8900 24 1 1.8933 -0.5138 0.8899 25 1 1.5817 1.6878 -2.0284 26 1 2.0955 3.1411 -1.1383 27 1 5.7172 2.5736 -4.0834 28 1 1.8450 0.2981 2.4030 29 1 2.2560 1.4940 4.5393 30 1 2.9010 3.8935 4.4579 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069018039.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:13 Heat of formation + Delta-G solvation = 29.232094 kcal Electronic energy + Delta-G solvation = -14873.040235 eV Core-core repulsion = 12328.111341 eV Total energy + Delta-G solvation = -2544.928894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.19299 -37.96216 -34.86361 -33.63401 -32.94842 -31.66667 -30.63844 -28.45479 -25.02732 -24.57359 -23.32907 -21.63471 -19.06914 -18.40500 -17.62592 -16.62862 -16.28859 -15.98952 -15.63098 -15.19205 -14.62232 -14.28464 -14.14471 -13.75825 -13.53370 -13.16718 -12.84067 -12.53004 -12.36469 -12.19374 -11.93419 -11.82015 -11.70151 -11.37593 -10.93240 -10.81412 -10.35216 -10.22457 -8.37377 -8.30853 -6.35621 0.15835 0.45879 0.58088 1.30901 1.35200 1.42750 2.23220 2.30837 2.90024 3.02606 3.72933 4.03322 4.18915 4.25238 4.35863 4.39899 4.46750 4.67325 4.80794 4.92240 4.96331 5.02694 5.09621 5.28793 5.38047 5.49433 5.64319 5.98057 6.30906 6.57768 6.66345 7.20221 7.30215 8.84581 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.014702 B = 0.008096 C = 0.005772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.059346 B = 3457.525487 C = 4850.188417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.115 3.885 3 N -0.598 5.598 4 C 0.239 3.761 5 C -0.524 4.524 6 H 0.025 0.975 7 C 0.013 3.987 8 N -0.947 5.947 9 Si 0.943 3.057 10 H -0.274 1.274 11 H -0.277 1.277 12 H -0.243 1.243 13 C 0.399 3.601 14 C -0.237 4.237 15 C -0.018 4.018 16 C -0.211 4.211 17 C 0.150 3.850 18 Br -0.028 7.028 19 N -0.560 5.560 20 H 0.042 0.958 21 H 0.093 0.907 22 H 0.057 0.943 23 H 0.069 0.931 24 H 0.093 0.907 25 H 0.034 0.966 26 H 0.025 0.975 27 H 0.267 0.733 28 H 0.162 0.838 29 H 0.186 0.814 30 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.398 0.643 15.353 18.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.007 4.007 3 N -0.308 5.308 4 C 0.116 3.884 5 C -0.563 4.563 6 H 0.043 0.957 7 C -0.185 4.185 8 N -0.587 5.587 9 Si 0.766 3.234 10 H -0.200 1.200 11 H -0.202 1.202 12 H -0.167 1.167 13 C 0.162 3.838 14 C -0.262 4.262 15 C -0.044 4.044 16 C -0.237 4.237 17 C -0.067 4.067 18 Br 0.056 6.944 19 N -0.279 5.279 20 H 0.061 0.939 21 H 0.112 0.888 22 H 0.076 0.924 23 H 0.087 0.913 24 H 0.111 0.889 25 H 0.052 0.948 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.179 0.821 29 H 0.203 0.797 30 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -10.065 1.658 14.172 17.461 hybrid contribution 0.190 -0.083 -0.370 0.424 sum -9.875 1.575 13.801 17.044 Atomic orbital electron populations 1.22135 0.94395 1.03330 1.01720 1.21640 0.95119 0.80535 1.03431 1.46803 1.67563 1.13714 1.02689 1.19187 0.94088 0.93102 0.81980 1.21560 0.97050 1.31429 1.06274 0.95701 1.25765 0.96525 0.97235 0.98931 1.70051 1.17367 1.46864 1.24463 0.85788 0.80397 0.79339 0.77873 1.20005 1.20210 1.16676 1.18725 0.90059 0.87444 0.87621 1.21852 1.10760 1.02543 0.91046 1.21769 0.91010 0.92590 0.99041 1.21888 1.08084 0.97029 0.96685 1.22679 1.00156 0.92718 0.91155 1.96655 1.90994 1.07679 1.99106 1.66761 1.20024 1.09703 1.31441 0.93866 0.88818 0.92405 0.91255 0.88927 0.94793 0.95718 0.92450 0.82067 0.79666 0.81884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.77 10.24 71.98 0.74 -3.03 16 2 C 0.12 3.53 5.98 86.38 0.52 4.05 16 3 N -0.60 -24.58 2.57 -708.25 -1.82 -26.40 16 4 C 0.24 11.82 4.29 85.63 0.37 12.19 16 5 C -0.52 -31.12 9.94 25.60 0.25 -30.87 16 6 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 7 C 0.01 0.78 5.47 84.66 0.46 1.25 16 8 N -0.95 -60.70 13.96 21.45 0.30 -60.40 16 9 Si 0.94 45.59 27.47 68.60 1.88 47.47 16 10 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.24 -10.74 6.54 99.48 0.65 -10.09 16 13 C 0.40 15.70 7.37 133.05 0.98 16.68 16 14 C -0.24 -6.76 9.27 22.50 0.21 -6.55 16 15 C -0.02 -0.42 10.16 22.44 0.23 -0.19 16 16 C -0.21 -5.66 9.82 22.39 0.22 -5.44 16 17 C 0.15 5.40 7.16 84.64 0.61 6.01 16 18 Br -0.03 -0.92 33.86 -20.37 -0.69 -1.61 16 19 N -0.56 -24.34 9.04 -188.19 -1.70 -26.04 16 20 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 22 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 24 H 0.09 2.33 5.97 -2.39 -0.01 2.32 16 25 H 0.03 1.60 7.13 -2.38 -0.02 1.59 16 26 H 0.02 1.30 6.73 -2.39 -0.02 1.29 16 27 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 28 H 0.16 3.57 6.02 -2.91 -0.02 3.55 16 29 H 0.19 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -73.89 278.18 3.63 -70.25 By element: Atomic # 1 Polarization: 1.55 SS G_CDS: 1.08 Total: 2.63 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.58 Total: -5.91 kcal Atomic # 7 Polarization: -109.62 SS G_CDS: -3.22 Total: -112.84 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Atomic # 35 Polarization: -0.92 SS G_CDS: -0.69 Total: -1.61 kcal Total: -73.89 3.63 -70.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069018039.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.486 kcal (2) G-P(sol) polarization free energy of solvation -73.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds