Wall clock time and date at job start Tue Mar 31 2020 05:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09009 * 109.47038 * 2 1 4 4 C 1.50697 * 109.47358 * 119.99547 * 2 1 3 5 5 H 1.08003 * 119.99603 * 120.00249 * 4 2 1 6 6 C 1.37879 * 120.00095 * 300.00455 * 4 2 1 7 7 N 1.31505 * 120.00278 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99802 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47374 * 60.00086 * 8 6 4 10 10 H 1.48503 * 109.47176 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47321 * 299.99992 * 8 6 4 12 12 N 1.46495 * 109.47465 * 240.00262 * 2 1 3 13 13 C 1.46504 * 119.99876 * 299.99625 * 12 2 1 14 14 C 1.38996 * 120.00644 * 119.99674 * 12 2 1 15 15 C 1.39114 * 119.70375 * 185.00240 * 14 12 2 16 16 C 1.38332 * 119.12008 * 179.97438 * 15 14 12 17 17 C 1.38830 * 118.51552 * 0.25405 * 16 15 14 18 18 C 1.38154 * 119.32405 * 359.49497 * 17 16 15 19 19 Br 1.89098 * 119.58654 * 180.25358 * 18 17 16 20 20 N 1.32042 * 120.82828 * 0.51486 * 18 17 16 21 21 H 1.09000 * 109.47490 * 299.99736 * 1 2 3 22 22 H 1.09000 * 109.47582 * 60.00431 * 1 2 3 23 23 H 1.09009 * 109.47038 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00351 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.47435 * 270.00280 * 13 12 2 26 26 H 1.09005 * 109.46738 * 29.99713 * 13 12 2 27 27 H 1.08993 * 109.47288 * 149.99701 * 13 12 2 28 28 H 1.08003 * 120.44016 * 359.97438 * 15 14 12 29 29 H 1.08002 * 120.73779 * 179.97438 * 16 15 14 30 30 H 1.08007 * 120.33681 * 179.75188 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1201 4.0079 9 1 3.8064 -1.1206 4.0082 10 1 1.8260 -0.4204 5.2205 11 1 1.8260 -2.5201 4.0078 12 7 2.0183 -0.6905 -1.1961 13 6 1.6645 -2.0932 -1.4280 14 6 2.8174 -0.0151 -2.1111 15 6 3.1915 -0.6427 -3.2949 16 6 3.9865 0.0409 -4.1972 17 6 4.3870 1.3323 -3.8821 18 6 3.9744 1.8969 -2.6906 19 35 4.5095 3.6580 -2.2571 20 7 3.2153 1.2203 -1.8483 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5137 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 0.7088 1.1614 3.4844 25 1 2.4158 -2.7376 -0.9716 26 1 0.6905 -2.3002 -0.9846 27 1 1.6239 -2.2852 -2.5001 28 1 2.8655 -1.6503 -3.5067 29 1 4.2926 -0.4214 -5.1241 30 1 5.0113 1.8915 -4.5634 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069018474.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:46 Heat of formation + Delta-G solvation = 50.949875 kcal Electronic energy + Delta-G solvation = -14923.905586 eV Core-core repulsion = 12379.918445 eV Total energy + Delta-G solvation = -2543.987141 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.80049 -36.44542 -33.13205 -32.26521 -31.22523 -29.73469 -28.18143 -25.96720 -25.17577 -22.88828 -21.84822 -19.80350 -17.02321 -16.50444 -15.85214 -15.30648 -14.63144 -14.30434 -14.11016 -13.46106 -13.06735 -12.80153 -12.54867 -11.75465 -11.49770 -11.21954 -11.09797 -10.87358 -10.74459 -10.60686 -10.28405 -10.12718 -10.06401 -9.72349 -9.18918 -8.88185 -8.77249 -8.39126 -6.82583 -6.04288 -4.13080 1.46011 1.75449 1.84241 3.28537 3.33650 3.35567 3.78883 4.23180 4.40271 4.98120 5.25132 5.35605 5.45443 5.54010 5.68797 5.80534 6.04713 6.20774 6.26922 6.53182 6.69055 6.80854 6.85088 7.06191 7.38735 7.61288 7.82277 8.00831 8.21430 8.37347 8.62817 8.92428 9.52540 10.99608 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.019184 B = 0.006400 C = 0.005285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.224531 B = 4373.635547 C = 5296.428239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.263 3.737 3 H 0.071 0.929 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.278 1.278 12 N -0.579 5.579 13 C 0.099 3.901 14 C 0.426 3.574 15 C -0.249 4.249 16 C -0.028 4.028 17 C -0.232 4.232 18 C 0.186 3.814 19 Br -0.030 7.030 20 N -0.513 5.513 21 H 0.094 0.906 22 H 0.010 0.990 23 H 0.028 0.972 24 H 0.263 0.737 25 H 0.048 0.952 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.137 0.841 -12.898 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.163 3.837 3 H 0.089 0.911 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.137 4.137 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.203 1.203 12 N -0.285 5.285 13 C -0.044 4.044 14 C 0.186 3.814 15 C -0.276 4.276 16 C -0.055 4.055 17 C -0.259 4.259 18 C -0.034 4.034 19 Br 0.054 6.946 20 N -0.232 5.232 21 H 0.113 0.887 22 H 0.029 0.971 23 H 0.047 0.953 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.151 0.849 29 H 0.150 0.850 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 4.800 1.856 -11.591 12.682 hybrid contribution 0.437 -1.267 0.140 1.348 sum 5.238 0.589 -11.452 12.606 Atomic orbital electron populations 1.22137 0.98498 0.99261 1.00809 1.19019 0.90505 0.94617 0.79530 0.91090 1.21296 1.31772 1.12971 0.90381 0.92535 1.24865 0.94967 0.94973 0.98853 1.69857 1.36342 1.22538 1.23817 0.86583 0.79263 0.79565 0.82124 1.20280 1.21144 1.20320 1.47297 1.48424 1.10393 1.22401 1.21545 1.01359 0.82011 0.99526 1.18403 0.88020 0.87509 0.87461 1.21502 1.07316 1.02750 0.96034 1.21144 0.93407 0.93042 0.97867 1.21378 1.08466 0.97568 0.98477 1.22266 0.96434 0.92595 0.92130 1.96685 1.88938 1.13793 1.95204 1.66956 1.15719 1.08121 1.32419 0.88721 0.97078 0.95250 0.92653 0.93376 0.90646 0.92796 0.84927 0.84964 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 8.95 37.15 0.33 -3.24 16 2 C 0.26 6.68 2.66 -69.09 -0.18 6.50 16 3 H 0.07 2.05 6.82 -51.92 -0.35 1.69 16 4 C -0.53 -14.30 8.37 -34.44 -0.29 -14.59 16 5 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 21.29 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.58 -12.43 2.87 -175.42 -0.50 -12.93 16 13 C 0.10 1.71 9.52 59.85 0.57 2.28 16 14 C 0.43 8.68 7.37 -155.02 -1.14 7.53 16 15 C -0.25 -4.00 9.27 -39.22 -0.36 -4.36 16 16 C -0.03 -0.39 10.16 -39.33 -0.40 -0.79 16 17 C -0.23 -3.47 9.82 -39.39 -0.39 -3.86 16 18 C 0.19 3.40 7.16 -17.49 -0.13 3.28 16 19 Br -0.03 -0.49 33.86 -68.01 -2.30 -2.79 16 20 N -0.51 -11.16 8.81 -10.83 -0.10 -11.26 16 21 H 0.09 2.50 6.07 -51.93 -0.32 2.18 16 22 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.03 0.65 6.66 -51.92 -0.35 0.30 16 24 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.07 1.30 6.43 -51.93 -0.33 0.97 16 27 H 0.05 0.74 5.98 -51.93 -0.31 0.43 16 28 H 0.13 1.78 6.02 -52.48 -0.32 1.47 16 29 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 30 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 LS Contribution 272.65 15.07 4.11 4.11 Total: -1.00 -29.56 272.65 -8.47 -38.03 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -3.20 Total: -1.36 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -2.08 Total: -5.53 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.03 Total: -48.72 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 35 Polarization: -0.49 SS G_CDS: -2.30 Total: -2.79 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -29.56 -8.47 -38.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069018474.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.983 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds