Wall clock time and date at job start Tue Mar 31 2020 05:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 119.99923 * 2 1 4 4 H 1.48499 * 109.47135 * 269.99694 * 3 2 1 5 5 H 1.48500 * 109.46751 * 29.99670 * 3 2 1 6 6 H 1.48503 * 109.47215 * 149.99504 * 3 2 1 7 7 C 1.37879 * 120.00502 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00139 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99824 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99665 * 180.28062 * 10 9 7 12 12 O 1.21563 * 120.00283 * 359.72077 * 11 10 9 13 13 C 1.47774 * 119.99699 * 179.72378 * 11 10 9 14 14 C 1.39625 * 120.15271 * 359.72068 * 13 11 10 15 15 C 1.37902 * 119.86180 * 179.76793 * 14 13 11 16 16 C 1.38425 * 120.18242 * 0.51045 * 15 14 13 17 17 N 1.48012 * 119.84386 * 179.72119 * 16 15 14 18 18 O 1.21797 * 120.00352 * 180.02562 * 17 16 15 19 19 O 1.21805 * 119.99893 * 0.02562 * 17 16 15 20 20 C 1.38273 * 120.31554 * 359.74295 * 16 15 14 21 21 C 1.38160 * 120.13020 * 359.97438 * 20 16 15 22 22 Cl 1.73601 * 120.09003 * 179.97438 * 21 20 16 23 23 H 0.96997 * 120.00009 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46601 * 59.99932 * 9 7 2 25 25 H 1.08998 * 109.47035 * 300.00439 * 9 7 2 26 26 H 0.97001 * 119.99790 * 359.97438 * 10 9 7 27 27 H 1.07993 * 120.06939 * 0.02562 * 14 13 11 28 28 H 1.07997 * 119.90949 * 180.25292 * 15 14 13 29 29 H 1.07995 * 119.93555 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0018 11 6 1.7540 -4.8833 -0.0037 12 8 0.5588 -5.1055 -0.0046 13 6 2.7143 -6.0064 -0.0087 14 6 4.0877 -5.7549 -0.0135 15 6 4.9786 -6.8075 -0.0132 16 6 4.5148 -8.1117 -0.0188 17 7 5.4777 -9.2359 -0.0248 18 8 5.0728 -10.3846 -0.0302 19 8 6.6750 -9.0122 -0.0242 20 6 3.1563 -8.3694 -0.0194 21 6 2.2523 -7.3247 -0.0138 22 17 0.5469 -7.6494 -0.0151 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8898 25 1 0.6241 -2.5567 0.8902 26 1 3.1569 -3.4353 0.0021 27 1 4.4516 -4.7381 -0.0133 28 1 6.0410 -6.6138 -0.0129 29 1 2.8012 -9.3893 -0.0233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070192714.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:06 Heat of formation + Delta-G solvation = -13.882849 kcal Electronic energy + Delta-G solvation = -18923.857140 eV Core-core repulsion = 15455.653233 eV Total energy + Delta-G solvation = -3468.203907 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.47426 -40.32778 -38.36541 -36.86977 -36.68664 -34.54368 -32.90900 -32.11549 -31.51834 -28.03292 -26.73702 -23.72016 -23.55414 -22.38179 -20.39951 -19.75547 -18.94717 -18.30631 -17.82135 -16.34265 -16.15336 -15.72205 -15.06752 -15.01000 -14.83260 -14.49845 -13.84945 -13.69577 -12.97304 -12.33789 -12.09719 -12.04954 -11.93638 -11.85493 -11.55882 -11.40319 -11.31010 -11.05200 -11.00146 -10.41833 -9.96699 -9.56456 -9.43609 -9.32306 -8.90662 -8.16154 -6.30367 -4.38752 -0.67805 0.39321 0.83572 0.96937 1.82447 2.47948 3.15551 3.21683 3.23860 3.46055 3.49888 3.91824 4.13081 4.21388 4.31064 4.46242 4.68102 4.96352 5.06369 5.15187 5.35978 5.45825 5.64792 6.06157 7.05152 7.07528 7.30852 7.34168 7.45085 7.78932 8.27428 8.51090 8.74608 9.28104 10.79511 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.023947 B = 0.003908 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.969304 B = 7163.058721 C = 8316.871685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.066 3.934 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.695 5.695 11 C 0.527 3.473 12 O -0.515 6.515 13 C -0.061 4.061 14 C -0.078 4.078 15 C -0.058 4.058 16 C -0.025 4.025 17 N 0.029 4.971 18 O -0.155 6.155 19 O -0.153 6.153 20 C -0.058 4.058 21 C 0.002 3.998 22 Cl 0.003 6.997 23 H 0.268 0.732 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.390 0.610 27 H 0.163 0.837 28 H 0.164 0.836 29 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.802 -13.869 -0.034 16.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.587 4.587 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.344 5.344 11 C 0.310 3.690 12 O -0.392 6.392 13 C -0.065 4.065 14 C -0.097 4.097 15 C -0.077 4.077 16 C -0.108 4.108 17 N 0.550 4.450 18 O -0.372 6.372 19 O -0.369 6.369 20 C -0.078 4.078 21 C -0.027 4.027 22 Cl 0.032 6.968 23 H 0.077 0.923 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.225 0.775 27 H 0.180 0.820 28 H 0.182 0.818 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 7.102 -13.327 -0.024 15.101 hybrid contribution 1.038 0.675 -0.011 1.238 sum 8.140 -12.652 -0.035 15.044 Atomic orbital electron populations 1.69959 1.06125 1.27569 1.48281 1.24946 0.94943 0.99538 0.94461 0.86390 0.79605 0.82472 0.78313 1.20377 1.20907 1.19697 1.21161 0.93261 0.90243 1.54048 0.91801 1.19251 0.88105 0.81427 0.98279 1.46500 1.11527 1.05665 1.70740 1.17910 0.87887 0.83097 0.80140 1.90880 1.15086 1.84110 1.49146 1.20779 0.94885 0.94089 0.96787 1.21463 0.90701 1.00343 0.97204 1.21079 1.02851 0.89010 0.94748 1.21065 0.89015 0.87095 1.13611 1.43518 1.01722 1.02146 0.97655 1.94559 1.83660 1.05793 1.53157 1.94554 0.98291 1.91048 1.53054 1.20811 0.89473 1.01349 0.96140 1.20780 0.88681 0.92097 1.01158 1.98468 1.07446 1.95069 1.95785 0.92258 0.94923 0.94913 0.77550 0.81967 0.81810 0.81591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.73 13.29 55.43 0.74 -23.99 15 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 15 3 Si 0.91 19.79 29.54 -169.99 -5.02 14.76 15 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 15 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 15 6 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 7 C -0.55 -13.81 9.28 -34.44 -0.32 -14.13 15 8 H 0.06 1.48 7.60 -52.49 -0.40 1.08 15 9 C 0.25 6.04 5.43 -5.19 -0.03 6.01 15 10 N -0.70 -12.88 5.50 -62.45 -0.34 -13.23 15 11 C 0.53 9.37 7.77 -12.36 -0.10 9.27 15 12 O -0.51 -10.93 13.97 5.31 0.07 -10.85 15 13 C -0.06 -0.81 5.88 -104.94 -0.62 -1.43 15 14 C -0.08 -0.77 9.54 -39.19 -0.37 -1.14 15 15 C -0.06 -0.52 9.54 -39.64 -0.38 -0.90 15 16 C -0.02 -0.26 6.86 -79.87 -0.55 -0.81 15 17 N 0.03 0.35 4.45 34.00 0.15 0.50 15 18 O -0.16 -1.97 18.43 -29.46 -0.54 -2.51 15 19 O -0.15 -1.89 18.43 -29.46 -0.54 -2.43 15 20 C -0.06 -0.62 9.33 -39.60 -0.37 -0.99 15 21 C 0.00 0.02 6.35 -39.07 -0.25 -0.22 15 22 Cl 0.00 0.04 26.02 -51.86 -1.35 -1.31 15 23 H 0.27 7.06 8.31 -40.82 -0.34 6.72 15 24 H 0.03 0.88 8.14 -51.92 -0.42 0.46 15 25 H 0.03 0.88 8.14 -51.93 -0.42 0.46 15 26 H 0.39 5.88 6.36 -40.82 -0.26 5.62 15 27 H 0.16 1.24 6.41 -52.49 -0.34 0.90 15 28 H 0.16 1.12 7.60 -52.49 -0.40 0.72 15 29 H 0.17 1.51 7.59 -52.49 -0.40 1.12 15 LS Contribution 286.51 15.07 4.32 4.32 Total: -1.00 -29.83 286.51 -7.37 -37.19 By element: Atomic # 1 Polarization: 2.05 SS G_CDS: -1.77 Total: 0.28 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -3.07 Total: -2.72 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.54 Total: -36.72 kcal Atomic # 8 Polarization: -14.78 SS G_CDS: -1.01 Total: -15.80 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.35 Total: -1.31 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.83 -7.37 -37.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070192714.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.309 kcal (2) G-P(sol) polarization free energy of solvation -29.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds