Wall clock time and date at job start Tue Mar 31 2020 05:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 119.99862 * 2 1 4 4 H 1.08000 * 120.00026 * 202.31517 * 3 2 1 5 5 C 1.38817 * 119.99981 * 22.32106 * 3 2 1 6 6 N 1.31613 * 119.99889 * 11.13627 * 5 3 2 7 7 Si 1.86796 * 119.99775 * 191.13460 * 5 3 2 8 8 H 1.48497 * 109.47384 * 59.99979 * 7 5 3 9 9 H 1.48505 * 109.47223 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47582 * 299.99951 * 7 5 3 11 11 S 1.65593 * 119.99884 * 180.02562 * 2 1 3 12 12 O 1.42103 * 106.40430 * 156.45914 * 11 2 1 13 13 O 1.42100 * 106.40644 * 23.53459 * 11 2 1 14 14 C 1.76203 * 107.21851 * 269.99842 * 11 2 1 15 15 C 1.38448 * 119.89298 * 89.99748 * 14 11 2 16 16 C 1.38228 * 120.34629 * 180.02562 * 15 14 11 17 17 C 1.38274 * 120.12746 * 0.02562 * 16 15 14 18 18 F 1.35097 * 120.11179 * 179.97438 * 17 16 15 19 19 C 1.39867 * 119.77964 * 359.97438 * 17 16 15 20 20 C 1.43197 * 120.17071 * 179.72663 * 19 17 16 21 21 N 6.76651 * 132.12657 * 101.87546 * 2 1 3 22 22 C 1.37872 * 119.89372 * 270.00264 * 14 11 2 23 23 H 1.08993 * 109.46956 * 274.21802 * 1 2 3 24 24 H 1.09004 * 109.46770 * 34.21540 * 1 2 3 25 25 H 1.08997 * 109.47044 * 154.21878 * 1 2 3 26 26 H 0.97003 * 119.99865 * 180.02562 * 6 5 3 27 27 H 1.08001 * 119.82476 * 0.03031 * 15 14 11 28 28 H 1.08010 * 119.93211 * 179.97438 * 16 15 14 29 29 H 1.08001 * 120.05850 * 359.97438 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2210 -0.3551 5 6 1.5336 2.3430 0.4566 6 7 0.3817 2.2696 1.0891 7 14 2.3394 4.0043 0.1733 8 1 2.4996 4.2346 -1.2849 9 1 1.4871 5.0732 0.7531 10 1 3.6726 4.0258 0.8272 11 16 2.2930 -1.4341 -0.0006 12 8 3.5760 -1.1566 -0.5450 13 8 1.4113 -2.4063 -0.5454 14 6 2.5538 -1.8865 1.6822 15 6 1.6164 -2.6638 2.3410 16 6 1.8113 -3.0237 3.6613 17 6 2.9459 -2.6083 4.3337 18 9 3.1358 -2.9599 5.6242 19 6 3.8964 -1.8230 3.6733 20 6 5.0715 -1.3833 4.3633 21 7 6.0038 -1.0327 4.9111 22 6 3.6907 -1.4653 2.3387 23 1 -0.3633 0.0756 1.0248 24 1 -0.3633 0.8499 -0.5779 25 1 -0.3633 -0.9254 -0.4470 26 1 -0.0490 3.0782 1.4078 27 1 0.7283 -2.9906 1.8205 28 1 1.0755 -3.6300 4.1689 29 1 4.4204 -0.8593 1.8223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071239261.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:10 Heat of formation + Delta-G solvation = -51.461581 kcal Electronic energy + Delta-G solvation = -19933.531331 eV Core-core repulsion = 16478.114383 eV Total energy + Delta-G solvation = -3455.416947 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.042 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.11133 -38.94515 -36.33737 -35.97542 -35.86208 -34.55652 -31.68708 -31.42081 -30.60128 -26.63868 -24.06603 -23.67821 -22.95064 -19.64351 -18.49881 -17.51586 -17.07610 -16.62558 -16.50577 -15.92261 -15.81707 -14.81372 -14.43686 -14.11456 -13.66480 -13.62765 -13.43254 -13.19823 -13.12148 -12.76993 -12.43268 -12.17493 -11.93957 -11.52035 -11.32482 -11.20505 -11.10524 -10.83035 -10.78907 -10.39321 -10.31542 -10.07698 -9.45502 -9.05531 -8.92200 -8.29176 -6.76523 -4.21627 0.62030 1.06700 1.56597 2.66865 2.86688 3.03695 3.06197 3.10419 3.67666 3.80825 3.85119 4.03556 4.31805 4.60208 4.70057 4.93703 5.06883 5.32842 5.48766 5.70827 5.88252 5.95294 6.12159 6.25082 6.37282 6.71296 6.75386 6.93808 7.05407 7.27470 7.49070 8.07771 8.42959 8.90320 10.17896 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.007080 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.200939 B = 3953.791265 C = 4705.890580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.796 5.796 3 C -0.236 4.236 4 H 0.120 0.880 5 C 0.032 3.968 6 N -0.826 5.826 7 Si 0.930 3.070 8 H -0.265 1.265 9 H -0.279 1.279 10 H -0.266 1.266 11 S 2.513 3.487 12 O -0.982 6.982 13 O -0.997 6.997 14 C -0.665 4.665 15 C 0.024 3.976 16 C -0.177 4.177 17 C 0.168 3.832 18 F -0.131 7.131 19 C -0.090 4.090 20 C 0.262 3.738 21 N -0.415 5.415 22 C 0.052 3.948 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.279 0.721 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.204 -3.984 2.716 5.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.028 4.028 2 N -0.620 5.620 3 C -0.386 4.386 4 H 0.137 0.863 5 C -0.182 4.182 6 N -0.465 5.465 7 Si 0.754 3.246 8 H -0.190 1.190 9 H -0.204 1.204 10 H -0.190 1.190 11 S 2.609 3.391 12 O -0.971 6.971 13 O -0.986 6.986 14 C -0.740 4.740 15 C 0.005 3.995 16 C -0.197 4.197 17 C 0.146 3.854 18 F -0.109 7.109 19 C -0.095 4.095 20 C -0.053 4.053 21 N -0.091 5.091 22 C 0.030 3.970 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.090 0.910 27 H 0.167 0.833 28 H 0.164 0.836 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.596 -4.186 3.067 5.223 hybrid contribution -0.070 0.613 1.117 1.276 sum -0.666 -3.573 4.184 5.542 Atomic orbital electron populations 1.21401 0.78899 1.00349 1.02153 1.54334 1.13355 1.18838 1.75450 1.20122 1.01344 0.83022 1.34141 0.86274 1.25834 0.96411 1.01354 0.94552 1.70078 1.14913 1.30864 1.30650 0.85906 0.79411 0.79618 0.79621 1.18997 1.20405 1.19037 1.12829 0.73986 0.74834 0.77416 1.93356 1.41468 1.84524 1.77754 1.93339 1.65137 1.61749 1.78418 1.32861 1.00145 1.07673 1.33297 1.21014 0.96906 0.89391 0.92239 1.21171 0.97360 1.04967 0.96182 1.17725 0.94395 0.95064 0.78260 1.91525 1.95121 1.89787 1.34489 1.16121 0.91767 1.06567 0.95055 1.25359 0.92852 0.93638 0.93480 1.81214 1.10768 1.08902 1.08177 1.20878 0.94937 0.91318 0.89865 0.92678 0.90506 0.93390 0.91041 0.83269 0.83606 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.34 8.92 59.85 0.53 2.88 15 2 N -0.80 -17.16 3.31 -66.68 -0.22 -17.38 15 3 C -0.24 -5.30 9.44 -15.06 -0.14 -5.45 15 4 H 0.12 2.65 7.16 -52.49 -0.38 2.27 15 5 C 0.03 0.70 5.13 -17.43 -0.09 0.61 15 6 N -0.83 -18.24 10.57 55.49 0.59 -17.65 15 7 Si 0.93 17.26 29.57 -169.99 -5.03 12.23 15 8 H -0.27 -4.89 7.11 56.52 0.40 -4.49 15 9 H -0.28 -5.14 7.11 56.52 0.40 -4.74 15 10 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 11 S 2.51 52.35 5.65 -107.50 -0.61 51.74 15 12 O -0.98 -22.69 16.06 -57.17 -0.92 -23.61 15 13 O -1.00 -21.81 15.83 -57.17 -0.90 -22.72 15 14 C -0.66 -11.94 5.97 -39.64 -0.24 -12.18 15 15 C 0.02 0.37 9.51 -39.51 -0.38 0.00 15 16 C -0.18 -2.39 10.01 -39.57 -0.40 -2.79 15 17 C 0.17 2.49 7.28 -38.96 -0.28 2.21 15 18 F -0.13 -1.91 16.81 2.25 0.04 -1.87 15 19 C -0.09 -1.46 5.74 -106.82 -0.61 -2.07 15 20 C 0.26 4.44 14.98 -22.45 -0.34 4.11 15 21 N -0.42 -7.52 18.54 41.86 0.78 -6.74 15 22 C 0.05 0.89 9.23 -39.17 -0.36 0.53 15 23 H 0.05 1.09 7.42 -51.93 -0.39 0.70 15 24 H 0.08 1.56 7.18 -51.93 -0.37 1.19 15 25 H 0.05 0.87 6.93 -51.93 -0.36 0.51 15 26 H 0.28 5.81 8.31 -40.82 -0.34 5.48 15 27 H 0.15 2.05 7.60 -52.49 -0.40 1.65 15 28 H 0.15 1.48 8.06 -52.48 -0.42 1.05 15 29 H 0.15 2.60 7.60 -52.49 -0.40 2.20 15 LS Contribution 284.14 15.07 4.28 4.28 Total: -1.00 -26.45 284.14 -6.14 -32.60 By element: Atomic # 1 Polarization: 3.11 SS G_CDS: -1.85 Total: 1.26 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -2.30 Total: -12.15 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: 1.14 Total: -41.77 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -1.82 Total: -46.33 kcal Atomic # 9 Polarization: -1.91 SS G_CDS: 0.04 Total: -1.87 kcal Atomic # 14 Polarization: 17.26 SS G_CDS: -5.03 Total: 12.23 kcal Atomic # 16 Polarization: 52.35 SS G_CDS: -0.61 Total: 51.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.45 -6.14 -32.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071239261.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.863 kcal (2) G-P(sol) polarization free energy of solvation -26.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds