Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36934 * 119.99862 * 2 1 4 4 H 1.08000 * 120.00026 * 202.31517 * 3 2 1 5 5 C 1.38817 * 119.99981 * 22.32106 * 3 2 1 6 6 N 1.31613 * 119.99889 * 11.13627 * 5 3 2 7 7 Si 1.86796 * 119.99775 * 191.13460 * 5 3 2 8 8 H 1.48497 * 109.47384 * 59.99979 * 7 5 3 9 9 H 1.48505 * 109.47223 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47582 * 299.99951 * 7 5 3 11 11 S 1.65593 * 119.99884 * 180.02562 * 2 1 3 12 12 O 1.42103 * 106.40430 * 156.45914 * 11 2 1 13 13 O 1.42100 * 106.40644 * 23.53459 * 11 2 1 14 14 C 1.76203 * 107.21851 * 269.99842 * 11 2 1 15 15 C 1.38448 * 119.89298 * 89.99748 * 14 11 2 16 16 C 1.38228 * 120.34629 * 180.02562 * 15 14 11 17 17 C 1.38274 * 120.12746 * 0.02562 * 16 15 14 18 18 F 1.35097 * 120.11179 * 179.97438 * 17 16 15 19 19 C 1.39867 * 119.77964 * 359.97438 * 17 16 15 20 20 C 1.43197 * 120.17071 * 179.72663 * 19 17 16 21 21 N 6.76651 * 132.12657 * 101.87546 * 2 1 3 22 22 C 1.37872 * 119.89372 * 270.00264 * 14 11 2 23 23 H 1.08993 * 109.46956 * 274.21802 * 1 2 3 24 24 H 1.09004 * 109.46770 * 34.21540 * 1 2 3 25 25 H 1.08997 * 109.47044 * 154.21878 * 1 2 3 26 26 H 0.97003 * 119.99865 * 180.02562 * 6 5 3 27 27 H 1.08001 * 119.82476 * 0.03031 * 15 14 11 28 28 H 1.08010 * 119.93211 * 179.97438 * 16 15 14 29 29 H 1.08001 * 120.05850 * 359.97438 * 22 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1690 1.2210 -0.3551 5 6 1.5336 2.3430 0.4566 6 7 0.3817 2.2696 1.0891 7 14 2.3394 4.0043 0.1733 8 1 2.4996 4.2346 -1.2849 9 1 1.4871 5.0732 0.7531 10 1 3.6726 4.0258 0.8272 11 16 2.2930 -1.4341 -0.0006 12 8 3.5760 -1.1566 -0.5450 13 8 1.4113 -2.4063 -0.5454 14 6 2.5538 -1.8865 1.6822 15 6 1.6164 -2.6638 2.3410 16 6 1.8113 -3.0237 3.6613 17 6 2.9459 -2.6083 4.3337 18 9 3.1358 -2.9599 5.6242 19 6 3.8964 -1.8230 3.6733 20 6 5.0715 -1.3833 4.3633 21 7 6.0038 -1.0327 4.9111 22 6 3.6907 -1.4653 2.3387 23 1 -0.3633 0.0756 1.0248 24 1 -0.3633 0.8499 -0.5779 25 1 -0.3633 -0.9254 -0.4470 26 1 -0.0490 3.0782 1.4078 27 1 0.7283 -2.9906 1.8205 28 1 1.0755 -3.6300 4.1689 29 1 4.4204 -0.8593 1.8223 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071239261.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = -67.198303 kcal Electronic energy + Delta-G solvation = -19934.213726 eV Core-core repulsion = 16478.114383 eV Total energy + Delta-G solvation = -3456.099343 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.042 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.31694 -40.25333 -37.83227 -37.67755 -37.45896 -36.38913 -33.28984 -32.71036 -31.93443 -28.23673 -25.39704 -25.29503 -24.28120 -21.06157 -20.10988 -18.93650 -18.58801 -18.17203 -17.90144 -17.45267 -17.03792 -16.41215 -16.04445 -15.34380 -15.04829 -15.01824 -14.91729 -14.65854 -14.45578 -14.25479 -13.86583 -13.68437 -13.41099 -13.09679 -12.96356 -12.76070 -12.64537 -12.46547 -12.35394 -12.07609 -11.92575 -11.67143 -11.05071 -10.30488 -10.26089 -9.90455 -8.33616 -5.90917 -0.68125 -0.26309 -0.05996 1.31120 1.53339 1.54622 1.56071 1.62871 2.25954 2.38731 2.48821 2.69480 2.80115 2.97640 3.26338 3.49782 3.69733 4.00940 4.16290 4.39485 4.60588 4.66120 4.67151 4.85405 5.01321 5.14229 5.33997 5.43908 5.51382 5.70968 6.13862 6.45324 6.83302 7.28029 8.62388 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.015858 B = 0.007080 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.200939 B = 3953.791265 C = 4705.890580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.819 5.819 3 C -0.280 4.280 4 H 0.108 0.892 5 C 0.006 3.994 6 N -0.856 5.856 7 Si 0.977 3.023 8 H -0.265 1.265 9 H -0.276 1.276 10 H -0.270 1.270 11 S 2.563 3.437 12 O -1.006 7.006 13 O -1.004 7.004 14 C -0.685 4.685 15 C 0.028 3.972 16 C -0.156 4.156 17 C 0.180 3.820 18 F -0.124 7.124 19 C -0.096 4.096 20 C 0.273 3.727 21 N -0.438 5.438 22 C 0.045 3.955 23 H 0.053 0.947 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.279 0.721 27 H 0.171 0.829 28 H 0.192 0.808 29 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.837 -5.593 3.891 7.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.645 5.645 3 C -0.425 4.425 4 H 0.126 0.874 5 C -0.204 4.204 6 N -0.495 5.495 7 Si 0.801 3.199 8 H -0.190 1.190 9 H -0.200 1.200 10 H -0.195 1.195 11 S 2.661 3.339 12 O -0.996 6.996 13 O -0.994 6.994 14 C -0.766 4.766 15 C 0.008 3.992 16 C -0.175 4.175 17 C 0.158 3.842 18 F -0.102 7.102 19 C -0.101 4.101 20 C -0.042 4.042 21 N -0.113 5.113 22 C 0.023 3.977 23 H 0.071 0.929 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.188 0.812 28 H 0.209 0.791 29 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.245 -5.709 4.199 7.195 hybrid contribution 0.185 0.765 0.850 1.159 sum -1.060 -4.944 5.049 7.146 Atomic orbital electron populations 1.21331 0.78246 1.00520 1.01965 1.53880 1.13813 1.18502 1.78283 1.19999 1.01150 0.84182 1.37218 0.87395 1.26262 0.96787 1.03090 0.94271 1.70120 1.15918 1.31153 1.32318 0.85203 0.78403 0.77035 0.79275 1.18990 1.20033 1.19470 1.09655 0.73025 0.73945 0.77230 1.93349 1.42517 1.85040 1.78706 1.93349 1.65467 1.61615 1.78940 1.32202 1.02169 1.10869 1.31348 1.21326 0.96560 0.88097 0.93171 1.21541 0.97164 1.03752 0.95077 1.17851 0.94149 0.93857 0.78346 1.91555 1.95069 1.89506 1.34111 1.16065 0.92044 1.07343 0.94619 1.25448 0.92692 0.93043 0.92995 1.81225 1.11421 1.09682 1.09016 1.20821 0.94833 0.91444 0.90555 0.92865 0.91629 0.92003 0.91099 0.81207 0.79119 0.83464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 4.96 8.92 127.77 1.14 6.10 15 2 N -0.82 -35.49 3.31 -364.89 -1.21 -36.70 15 3 C -0.28 -12.92 9.44 84.04 0.79 -12.13 15 4 H 0.11 5.02 7.16 -2.91 -0.02 5.00 15 5 C 0.01 0.27 5.13 84.86 0.44 0.71 15 6 N -0.86 -38.50 10.57 21.65 0.23 -38.27 15 7 Si 0.98 36.12 29.57 68.60 2.03 38.14 15 8 H -0.27 -9.65 7.11 99.48 0.71 -8.94 15 9 H -0.28 -9.88 7.11 99.48 0.71 -9.18 15 10 H -0.27 -9.99 7.11 99.48 0.71 -9.29 15 11 S 2.56 104.68 5.65 -56.49 -0.32 104.36 15 12 O -1.01 -46.53 16.06 -128.00 -2.06 -48.59 15 13 O -1.00 -42.05 15.83 -128.00 -2.03 -44.07 15 14 C -0.69 -23.33 5.97 22.23 0.13 -23.19 15 15 C 0.03 0.76 9.51 22.32 0.21 0.97 15 16 C -0.16 -3.45 10.01 22.28 0.22 -3.23 15 17 C 0.18 4.69 7.28 22.67 0.17 4.85 15 18 F -0.12 -3.14 16.81 44.97 0.76 -2.38 15 19 C -0.10 -2.90 5.74 -21.29 -0.12 -3.02 15 20 C 0.27 8.89 14.98 88.32 1.32 10.21 15 21 N -0.44 -15.42 18.54 19.01 0.35 -15.07 15 22 C 0.05 1.51 9.23 22.53 0.21 1.72 15 23 H 0.05 2.09 7.42 -2.39 -0.02 2.08 15 24 H 0.07 2.71 7.18 -2.39 -0.02 2.70 15 25 H 0.06 2.20 6.93 -2.39 -0.02 2.18 15 26 H 0.28 11.85 8.31 -92.71 -0.77 11.08 15 27 H 0.17 3.92 7.60 -2.91 -0.02 3.90 15 28 H 0.19 2.59 8.06 -2.91 -0.02 2.56 15 29 H 0.15 5.03 7.60 -2.91 -0.02 5.01 15 Total: -1.00 -55.97 284.14 3.48 -52.50 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.21 Total: 7.10 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: 4.51 Total: -17.00 kcal Atomic # 7 Polarization: -89.42 SS G_CDS: -0.63 Total: -90.04 kcal Atomic # 8 Polarization: -88.58 SS G_CDS: -4.08 Total: -92.66 kcal Atomic # 9 Polarization: -3.14 SS G_CDS: 0.76 Total: -2.38 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.14 kcal Atomic # 16 Polarization: 104.68 SS G_CDS: -0.32 Total: 104.36 kcal Total: -55.97 3.48 -52.50 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071239261.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.703 kcal (2) G-P(sol) polarization free energy of solvation -55.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds