Wall clock time and date at job start Tue Mar 31 2020 05:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39692 * 120.16379 * 183.87419 * 3 2 1 5 5 C 1.37871 * 119.86478 * 180.32005 * 4 3 2 6 6 S 1.76202 * 119.88720 * 179.97438 * 5 4 3 7 7 O 1.42098 * 106.40318 * 23.49518 * 6 5 4 8 8 O 1.42104 * 106.40440 * 156.41587 * 6 5 4 9 9 N 1.65605 * 107.21817 * 269.95753 * 6 5 4 10 10 C 1.46491 * 120.00125 * 65.00164 * 9 6 5 11 11 C 1.50701 * 109.47482 * 165.00240 * 10 9 6 12 12 H 1.08002 * 119.99612 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00315 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99944 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00269 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46949 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47383 * 119.99083 * 15 13 11 18 18 H 1.48500 * 109.47230 * 239.99707 * 15 13 11 19 19 C 1.38438 * 120.22385 * 359.93510 * 5 4 3 20 20 C 1.38234 * 120.34429 * 0.04209 * 19 5 4 21 21 C 1.38273 * 120.12555 * 0.02562 * 20 19 5 22 22 F 1.35105 * 120.11265 * 179.97438 * 21 20 19 23 23 H 1.07994 * 120.06973 * 0.25469 * 4 3 2 24 24 H 0.97000 * 119.99758 * 244.99846 * 9 6 5 25 25 H 1.09004 * 109.47285 * 284.99943 * 10 9 6 26 26 H 1.08998 * 109.47362 * 44.99699 * 10 9 6 27 27 H 0.97008 * 119.99801 * 180.02562 * 14 13 11 28 28 H 1.08002 * 119.83045 * 180.02562 * 19 5 4 29 29 H 1.08006 * 119.93483 * 179.97438 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 1.2060 0.0816 5 6 4.6481 1.1999 0.0745 6 16 5.5333 2.7199 0.1767 7 8 4.6567 3.6543 0.7912 8 8 6.8178 2.4022 0.6949 9 7 5.7729 3.2528 -1.3729 10 6 4.6269 3.6338 -2.2019 11 6 5.1090 4.4139 -3.3978 12 1 6.1637 4.6069 -3.5270 13 6 4.2037 4.8820 -4.3262 14 7 2.9192 4.6473 -4.1685 15 14 4.8013 5.8496 -5.8082 16 1 6.2798 5.9763 -5.7531 17 1 4.4109 5.1400 -7.0529 18 1 4.1882 7.2021 -5.7963 19 6 5.3392 0.0035 -0.0119 20 6 4.6542 -1.1945 -0.0926 21 6 3.2715 -1.2050 -0.0880 22 9 2.6023 -2.3760 -0.1674 23 1 2.7328 2.1407 0.1491 24 1 6.6722 3.3127 -1.7315 25 1 4.1078 2.7364 -2.5388 26 1 3.9443 4.2503 -1.6170 27 1 2.2822 4.9764 -4.8220 28 1 6.4192 0.0061 -0.0166 29 1 5.2001 -2.1240 -0.1602 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071239314.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:15 Heat of formation + Delta-G solvation = -65.777964 kcal Electronic energy + Delta-G solvation = -19352.439832 eV Core-core repulsion = 15896.402079 eV Total energy + Delta-G solvation = -3456.037752 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.042 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.47884 -39.47202 -36.94045 -36.56975 -35.53776 -34.76346 -32.25268 -31.87420 -31.23065 -26.84904 -24.55826 -23.55788 -22.61161 -20.31961 -18.74096 -17.86207 -17.46730 -17.11227 -16.63653 -16.21475 -15.99504 -15.41272 -14.67714 -14.51556 -14.02728 -13.93083 -13.69092 -13.58447 -13.37806 -12.83089 -12.78242 -12.51687 -12.23349 -11.94239 -11.87525 -11.73714 -11.59280 -11.04301 -10.95222 -10.77532 -10.21655 -9.53459 -9.51040 -9.43188 -9.02229 -8.35718 -6.25556 -4.30767 0.13672 0.55834 0.77305 2.46174 2.46861 3.20352 3.28198 3.30091 3.32542 3.45763 3.54562 3.65364 4.04407 4.24781 4.28570 4.49815 4.74622 4.98127 5.11951 5.16586 5.37425 5.50188 5.60870 5.70005 6.24378 6.28211 7.15274 7.20976 7.28552 7.65200 7.71901 8.06542 8.73487 9.35227 10.84702 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.015695 B = 0.005623 C = 0.004724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.555896 B = 4977.925267 C = 5925.579373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.253 3.747 3 C -0.080 4.080 4 C 0.064 3.936 5 C -0.685 4.685 6 S 2.692 3.308 7 O -0.954 6.954 8 O -0.972 6.972 9 N -1.099 6.099 10 C 0.242 3.758 11 C -0.531 4.531 12 H 0.068 0.932 13 C 0.062 3.938 14 N -0.889 5.889 15 Si 0.903 3.097 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.282 1.282 19 C 0.038 3.962 20 C -0.176 4.176 21 C 0.193 3.807 22 F -0.121 7.121 23 H 0.164 0.836 24 H 0.413 0.587 25 H 0.023 0.977 26 H 0.041 0.959 27 H 0.266 0.734 28 H 0.159 0.841 29 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.096 -10.864 7.284 14.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.070 5.070 2 C -0.063 4.063 3 C -0.085 4.085 4 C 0.043 3.957 5 C -0.768 4.768 6 S 2.777 3.223 7 O -0.944 6.944 8 O -0.962 6.962 9 N -0.862 5.862 10 C 0.119 3.881 11 C -0.571 4.571 12 H 0.086 0.914 13 C -0.141 4.141 14 N -0.527 5.527 15 Si 0.731 3.269 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.208 1.208 19 C 0.018 3.982 20 C -0.195 4.195 21 C 0.171 3.829 22 F -0.099 7.099 23 H 0.181 0.819 24 H 0.248 0.752 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.177 0.823 29 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 3.157 -10.521 8.036 13.610 hybrid contribution 0.395 -0.365 -1.495 1.589 sum 3.551 -10.886 6.541 13.187 Atomic orbital electron populations 1.81239 1.11542 1.06080 1.08159 1.25127 0.92082 0.94765 0.94310 1.15985 0.85448 0.93760 1.13297 1.20996 0.92225 0.97476 0.85031 1.31467 1.05756 1.22122 1.17497 1.02024 0.73198 0.73450 0.73622 1.93596 1.67602 1.58462 1.74737 1.93549 1.39035 1.85152 1.78466 1.55454 1.17299 1.80108 1.33332 1.19162 0.82646 0.95820 0.90460 1.21196 0.94140 1.35310 1.06407 0.91421 1.24970 0.94760 0.96023 0.98383 1.69936 1.01155 1.45415 1.36212 0.86358 0.79008 0.79647 0.81911 1.19541 1.20860 1.20765 1.21043 1.01166 0.89717 0.86280 1.21193 0.91315 1.00714 1.06278 1.17858 0.90338 0.79867 0.94857 1.91579 1.80681 1.45271 1.92401 0.81853 0.75185 0.95907 0.94142 0.92403 0.82326 0.82670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -6.52 18.54 41.84 0.78 -5.75 15 2 C 0.25 3.72 14.98 -22.47 -0.34 3.38 15 3 C -0.08 -1.03 5.74 -106.82 -0.61 -1.64 15 4 C 0.06 0.87 9.22 -39.17 -0.36 0.51 15 5 C -0.69 -8.95 5.94 -39.64 -0.24 -9.18 15 6 S 2.69 41.96 5.73 -107.50 -0.62 41.34 15 7 O -0.95 -17.86 16.74 -57.17 -0.96 -18.82 15 8 O -0.97 -15.60 17.27 -57.17 -0.99 -16.59 15 9 N -1.10 -19.22 5.99 -11.66 -0.07 -19.29 15 10 C 0.24 5.43 5.98 -5.20 -0.03 5.40 15 11 C -0.53 -13.32 9.27 -34.44 -0.32 -13.64 15 12 H 0.07 1.62 7.65 -52.49 -0.40 1.22 15 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 14 N -0.89 -24.44 13.29 55.43 0.74 -23.70 15 15 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 15 16 H -0.27 -5.85 7.11 56.52 0.40 -5.44 15 17 H -0.28 -6.24 7.11 56.52 0.40 -5.84 15 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 19 C 0.04 0.39 9.51 -39.51 -0.38 0.01 15 20 C -0.18 -1.61 10.01 -39.57 -0.40 -2.00 15 21 C 0.19 2.16 7.28 -38.96 -0.28 1.88 15 22 F -0.12 -1.38 16.81 2.25 0.04 -1.35 15 23 H 0.16 2.21 7.60 -52.49 -0.40 1.81 15 24 H 0.41 6.49 8.54 -34.47 -0.29 6.20 15 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 15 26 H 0.04 0.98 7.75 -51.93 -0.40 0.58 15 27 H 0.27 6.93 8.31 -40.82 -0.34 6.60 15 28 H 0.16 1.27 7.60 -52.49 -0.40 0.87 15 29 H 0.16 0.92 8.06 -52.48 -0.42 0.49 15 LS Contribution 292.27 15.07 4.40 4.40 Total: -1.00 -31.17 292.27 -6.62 -37.80 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -1.88 Total: 0.72 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -3.05 Total: -13.77 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: 1.44 Total: -48.74 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.94 Total: -35.41 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 41.96 SS G_CDS: -0.62 Total: 41.34 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.17 -6.62 -37.80 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071239314.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.982 kcal (2) G-P(sol) polarization free energy of solvation -31.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds