Wall clock time and date at job start Tue Mar 31 2020 05:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46951 * 133.09510 * 3 2 1 5 5 N 1.46895 * 109.47125 * 185.41400 * 4 3 2 6 6 C 1.46903 * 110.99824 * 301.30555 * 5 4 3 7 7 C 1.50699 * 109.46541 * 289.15016 * 6 5 4 8 8 H 1.08000 * 120.00825 * 4.81832 * 7 6 5 9 9 C 1.37877 * 119.99772 * 184.81952 * 7 6 5 10 10 N 1.31516 * 120.00075 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99890 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46951 * 90.00008 * 11 9 7 13 13 H 1.48502 * 109.47034 * 210.00014 * 11 9 7 14 14 H 1.48495 * 109.47234 * 329.99993 * 11 9 7 15 15 C 1.46903 * 111.00116 * 65.25354 * 5 4 3 16 16 N 1.46499 * 109.47267 * 76.32657 * 15 5 4 17 17 N 1.37778 * 122.73232 * 82.64127 * 16 15 5 18 18 C 1.27779 * 116.35404 * 179.97438 * 17 16 15 19 19 S 1.75933 * 110.00700 * 0.02562 * 18 17 16 20 20 C 1.33559 * 122.72912 * 262.62900 * 16 15 5 21 21 S 1.71202 * 125.71505 * 0.05958 * 20 16 15 22 22 H 1.09002 * 109.47247 * 13.09354 * 3 2 1 23 23 H 1.09002 * 109.46480 * 253.09192 * 3 2 1 24 24 H 1.08991 * 109.47369 * 65.40990 * 4 3 2 25 25 H 1.09008 * 109.46735 * 305.40774 * 4 3 2 26 26 H 1.09000 * 109.47331 * 49.14529 * 6 5 4 27 27 H 1.09001 * 109.46989 * 169.15299 * 6 5 4 28 28 H 0.97000 * 119.99904 * 180.02562 * 10 9 7 29 29 H 1.09006 * 109.47215 * 316.32389 * 15 5 4 30 30 H 1.09003 * 109.47026 * 196.32647 * 15 5 4 31 31 H 1.08000 * 124.99678 * 179.74099 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9864 -1.0534 5 7 4.5807 0.8931 -1.1442 6 6 5.2082 1.1834 0.1520 7 6 5.0648 2.6512 0.4618 8 1 4.4917 3.2885 -0.1953 9 6 5.6654 3.1807 1.5843 10 7 6.3629 2.4046 2.3849 11 14 5.4883 5.0003 1.9680 12 1 4.2868 5.2130 2.8145 13 1 6.6949 5.4729 2.6934 14 1 5.3425 5.7614 0.7013 15 6 4.9941 -0.4243 -1.6458 16 7 4.7700 -0.4885 -3.0921 17 7 5.6648 0.0202 -4.0080 18 6 5.3472 -0.1022 -5.2396 19 16 3.7954 -0.9188 -5.3828 20 6 3.6816 -1.0451 -3.6302 21 16 2.3914 -1.7602 -2.7613 22 1 2.9718 -1.0001 -0.2328 23 1 2.9711 0.2997 0.9833 24 1 2.8351 2.0000 -0.7692 25 1 2.6773 0.7442 -2.0207 26 1 4.7199 0.5982 0.9313 27 1 6.2657 0.9224 0.1103 28 1 6.7851 2.7771 3.1748 29 1 4.4093 -1.2008 -1.1526 30 1 6.0525 -0.5776 -1.4350 31 1 5.9415 0.2485 -6.0704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000073756362.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:18 Heat of formation + Delta-G solvation = 122.836295 kcal Electronic energy + Delta-G solvation = -17821.118709 eV Core-core repulsion = 14971.765812 eV Total energy + Delta-G solvation = -2849.352897 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.046 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.76997 -37.84947 -35.82596 -33.62209 -32.62908 -30.51288 -28.34024 -26.76442 -25.27571 -23.74044 -22.01207 -20.64458 -19.53718 -18.02371 -17.20633 -16.55729 -16.29933 -15.53403 -15.24262 -14.89375 -14.47319 -14.29018 -13.72809 -13.50139 -13.03148 -12.49785 -12.11113 -11.92449 -11.78905 -11.69661 -11.61459 -11.45911 -11.18134 -10.91272 -10.85695 -10.74280 -10.34698 -10.15440 -9.89644 -9.53367 -8.61127 -7.92580 -7.84657 -7.58932 -6.20343 -4.22533 0.07520 0.33899 0.80207 1.23522 1.70182 2.04900 3.23915 3.26035 3.31202 3.32944 3.34505 3.99383 4.24890 4.40350 4.69124 4.73164 5.16944 5.19529 5.31533 5.46935 5.55979 5.73632 5.91782 6.16888 6.48661 6.75109 6.93818 6.97388 7.46397 7.64139 7.85829 8.08681 8.17720 8.82950 9.42823 10.89889 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.005775 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.724041 B = 4847.585062 C = 5922.726747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C 0.233 3.767 3 C -0.068 4.068 4 C 0.069 3.931 5 N -0.532 5.532 6 C 0.192 3.808 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.061 3.939 10 N -0.895 5.895 11 Si 0.898 3.102 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.269 3.731 16 N -0.325 5.325 17 N -0.211 5.211 18 C 0.035 3.965 19 S 0.118 5.882 20 C 0.217 3.783 21 S -0.470 6.470 22 H 0.109 0.891 23 H 0.118 0.882 24 H 0.093 0.907 25 H 0.065 0.935 26 H 0.011 0.989 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.103 0.897 30 H 0.117 0.883 31 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.566 -6.545 -14.325 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.138 5.138 2 C -0.084 4.084 3 C -0.109 4.109 4 C -0.061 4.061 5 N -0.256 5.256 6 C 0.068 3.932 7 C -0.550 4.550 8 H 0.083 0.917 9 C -0.141 4.141 10 N -0.534 5.534 11 Si 0.726 3.274 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.057 3.943 16 N -0.118 5.118 17 N -0.023 5.023 18 C -0.287 4.287 19 S 0.351 5.649 20 C -0.150 4.150 21 S -0.340 6.340 22 H 0.127 0.873 23 H 0.136 0.864 24 H 0.112 0.888 25 H 0.083 0.917 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.134 0.866 31 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -0.559 -6.577 -14.136 15.601 hybrid contribution 1.130 0.970 0.818 1.699 sum 0.571 -5.607 -13.318 14.462 Atomic orbital electron populations 1.81093 1.13105 1.09694 1.09935 1.28933 0.95011 0.92341 0.92142 1.20153 0.82420 1.03796 1.04563 1.22156 0.87456 0.99665 0.96850 1.62185 1.06935 1.23543 1.32920 1.19939 0.94646 0.97742 0.80841 1.21009 1.32763 0.92991 1.08195 0.91735 1.24927 0.94934 0.98250 0.96031 1.69921 1.33559 1.35544 1.14329 0.86489 0.77627 0.84800 0.78510 1.20574 1.21173 1.19793 1.22845 1.03827 0.95523 0.72147 1.49873 1.11255 1.41396 1.09310 1.74145 1.15613 1.12798 0.99784 1.29788 0.99835 1.01629 0.97486 1.86563 1.18130 1.58542 1.01628 1.28961 0.93763 0.92479 0.99846 1.93170 1.24093 1.51605 1.65119 0.87329 0.86406 0.88849 0.91672 0.97175 0.94153 0.92637 0.87996 0.86556 0.74855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.14 18.54 42.15 0.78 -8.36 16 2 C 0.23 4.19 15.43 -20.76 -0.32 3.87 16 3 C -0.07 -1.09 4.32 -29.52 -0.13 -1.22 16 4 C 0.07 1.19 4.70 -3.83 -0.02 1.17 16 5 N -0.53 -9.53 4.77 -239.98 -1.14 -10.67 16 6 C 0.19 4.12 4.53 -4.97 -0.02 4.09 16 7 C -0.51 -12.67 8.67 -34.44 -0.30 -12.97 16 8 H 0.06 1.62 7.26 -52.49 -0.38 1.24 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.89 -24.07 13.29 55.43 0.74 -23.33 16 11 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 14 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 15 C 0.27 4.00 5.66 -63.31 -0.36 3.64 16 16 N -0.32 -4.47 3.53 -63.89 -0.23 -4.70 16 17 N -0.21 -2.56 11.71 30.04 0.35 -2.21 16 18 C 0.03 0.28 12.48 51.08 0.64 0.92 16 19 S 0.12 1.11 23.38 -107.50 -2.51 -1.40 16 20 C 0.22 2.95 6.68 53.51 0.36 3.31 16 21 S -0.47 -7.66 26.40 -107.50 -2.84 -10.49 16 22 H 0.11 1.64 5.01 -51.93 -0.26 1.38 16 23 H 0.12 1.96 6.46 -51.93 -0.34 1.62 16 24 H 0.09 1.76 7.13 -51.93 -0.37 1.39 16 25 H 0.06 1.13 5.78 -51.92 -0.30 0.83 16 26 H 0.01 0.23 5.86 -51.93 -0.30 -0.08 16 27 H 0.04 0.93 7.70 -51.93 -0.40 0.53 16 28 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 29 H 0.10 1.46 4.74 -51.93 -0.25 1.21 16 30 H 0.12 1.65 7.65 -51.93 -0.40 1.25 16 31 H 0.24 0.68 8.06 -52.49 -0.42 0.25 16 LS Contribution 294.36 15.07 4.44 4.44 Total: -1.00 -30.55 294.36 -8.24 -38.78 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -2.55 Total: -1.64 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -0.25 Total: 4.28 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.50 Total: -49.26 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: -6.55 SS G_CDS: -5.35 Total: -11.90 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.55 -8.24 -38.78 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073756362.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.619 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds