Wall clock time and date at job start Tue Mar 31 2020 05:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46951 * 133.09510 * 3 2 1 5 5 N 1.46895 * 109.47125 * 185.41400 * 4 3 2 6 6 C 1.46903 * 110.99824 * 301.30555 * 5 4 3 7 7 C 1.50699 * 109.46541 * 289.15016 * 6 5 4 8 8 H 1.08000 * 120.00825 * 4.81832 * 7 6 5 9 9 C 1.37877 * 119.99772 * 184.81952 * 7 6 5 10 10 N 1.31516 * 120.00075 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99890 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.46951 * 90.00008 * 11 9 7 13 13 H 1.48502 * 109.47034 * 210.00014 * 11 9 7 14 14 H 1.48495 * 109.47234 * 329.99993 * 11 9 7 15 15 C 1.46903 * 111.00116 * 65.25354 * 5 4 3 16 16 N 1.46499 * 109.47267 * 76.32657 * 15 5 4 17 17 N 1.37778 * 122.73232 * 82.64127 * 16 15 5 18 18 C 1.27779 * 116.35404 * 179.97438 * 17 16 15 19 19 S 1.75933 * 110.00700 * 0.02562 * 18 17 16 20 20 C 1.33559 * 122.72912 * 262.62900 * 16 15 5 21 21 S 1.71202 * 125.71505 * 0.05958 * 20 16 15 22 22 H 1.09002 * 109.47247 * 13.09354 * 3 2 1 23 23 H 1.09002 * 109.46480 * 253.09192 * 3 2 1 24 24 H 1.08991 * 109.47369 * 65.40990 * 4 3 2 25 25 H 1.09008 * 109.46735 * 305.40774 * 4 3 2 26 26 H 1.09000 * 109.47331 * 49.14529 * 6 5 4 27 27 H 1.09001 * 109.46989 * 169.15299 * 6 5 4 28 28 H 0.97000 * 119.99904 * 180.02562 * 10 9 7 29 29 H 1.09006 * 109.47215 * 316.32389 * 15 5 4 30 30 H 1.09003 * 109.47026 * 196.32647 * 15 5 4 31 31 H 1.08000 * 124.99678 * 179.74099 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.9864 -1.0534 5 7 4.5807 0.8931 -1.1442 6 6 5.2082 1.1834 0.1520 7 6 5.0648 2.6512 0.4618 8 1 4.4917 3.2885 -0.1953 9 6 5.6654 3.1807 1.5843 10 7 6.3629 2.4046 2.3849 11 14 5.4883 5.0003 1.9680 12 1 4.2868 5.2130 2.8145 13 1 6.6949 5.4729 2.6934 14 1 5.3425 5.7614 0.7013 15 6 4.9941 -0.4243 -1.6458 16 7 4.7700 -0.4885 -3.0921 17 7 5.6648 0.0202 -4.0080 18 6 5.3472 -0.1022 -5.2396 19 16 3.7954 -0.9188 -5.3828 20 6 3.6816 -1.0451 -3.6302 21 16 2.3914 -1.7602 -2.7613 22 1 2.9718 -1.0001 -0.2328 23 1 2.9711 0.2997 0.9833 24 1 2.8351 2.0000 -0.7692 25 1 2.6773 0.7442 -2.0207 26 1 4.7199 0.5982 0.9313 27 1 6.2657 0.9224 0.1103 28 1 6.7851 2.7771 3.1748 29 1 4.4093 -1.2008 -1.1526 30 1 6.0525 -0.5776 -1.4350 31 1 5.9415 0.2485 -6.0704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000073756362.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:17 Heat of formation + Delta-G solvation = 102.304976 kcal Electronic energy + Delta-G solvation = -17822.009014 eV Core-core repulsion = 14971.765812 eV Total energy + Delta-G solvation = -2850.243202 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.046 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.80121 -39.24222 -37.31757 -34.98207 -34.21464 -31.93606 -29.78677 -28.14297 -26.43585 -25.37226 -23.09238 -22.02277 -20.57703 -19.27091 -18.48856 -18.26847 -17.61072 -16.73716 -16.62455 -16.14330 -15.81621 -15.48800 -15.19633 -14.91872 -14.29412 -14.05482 -13.55805 -13.46584 -13.15926 -13.02997 -12.95040 -12.78222 -12.68183 -12.57255 -12.35413 -11.95767 -11.74502 -11.68636 -11.40581 -10.87314 -10.54987 -9.36633 -8.97301 -8.83500 -8.16253 -6.22603 -0.91809 -0.59778 -0.07089 0.41592 0.72321 0.96555 1.44384 1.47308 1.55531 1.79081 1.86766 2.43046 2.85619 3.19236 3.21321 3.31300 3.92344 4.06949 4.11170 4.16041 4.30599 4.54613 4.58673 4.77056 5.04183 5.20558 5.26931 5.66108 5.92341 6.01651 6.16142 6.40087 6.63282 6.88874 7.45561 8.93360 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.017315 B = 0.005775 C = 0.004726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1616.724041 B = 4847.585062 C = 5922.726747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.250 3.750 3 C -0.055 4.055 4 C 0.080 3.920 5 N -0.537 5.537 6 C 0.206 3.794 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.016 3.984 10 N -0.924 5.924 11 Si 0.952 3.048 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.271 1.271 15 C 0.273 3.727 16 N -0.327 5.327 17 N -0.251 5.251 18 C 0.066 3.934 19 S 0.196 5.804 20 C 0.208 3.792 21 S -0.563 6.563 22 H 0.122 0.878 23 H 0.115 0.885 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.007 0.993 27 H 0.025 0.975 28 H 0.264 0.736 29 H 0.106 0.894 30 H 0.122 0.878 31 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -6.061 -16.876 18.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.067 4.067 3 C -0.097 4.097 4 C -0.050 4.050 5 N -0.260 5.260 6 C 0.081 3.919 7 C -0.555 4.555 8 H 0.076 0.924 9 C -0.183 4.183 10 N -0.564 5.564 11 Si 0.778 3.222 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.195 1.195 15 C 0.061 3.939 16 N -0.117 5.117 17 N -0.062 5.062 18 C -0.254 4.254 19 S 0.431 5.569 20 C -0.163 4.163 21 S -0.434 6.434 22 H 0.139 0.861 23 H 0.133 0.867 24 H 0.093 0.907 25 H 0.086 0.914 26 H 0.025 0.975 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.124 0.876 30 H 0.140 0.860 31 H 0.307 0.693 Dipole moment (debyes) X Y Z Total from point charges 0.456 -6.090 -16.734 17.814 hybrid contribution 0.944 0.835 1.300 1.811 sum 1.400 -5.255 -15.434 16.364 Atomic orbital electron populations 1.81091 1.14068 1.10883 1.11056 1.29132 0.95154 0.91288 0.91109 1.20097 0.81298 1.04275 1.03998 1.21983 0.87181 0.98724 0.97149 1.62007 1.06943 1.25873 1.31218 1.19583 0.93881 0.95976 0.82464 1.21316 1.31839 0.94631 1.07757 0.92427 1.25583 0.95009 1.01551 0.96204 1.70006 1.34686 1.36908 1.14833 0.85648 0.77412 0.80941 0.78198 1.20496 1.21045 1.19531 1.22719 1.04150 0.93894 0.73167 1.49753 1.11557 1.41022 1.09390 1.74273 1.15711 1.15240 1.01021 1.30889 0.99045 0.98063 0.97433 1.86429 1.17749 1.56606 0.96129 1.29050 0.92846 0.92049 1.02306 1.93340 1.26694 1.55680 1.67694 0.86054 0.86712 0.90666 0.91394 0.97494 0.95724 0.92712 0.87621 0.85967 0.69306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -19.85 18.54 20.01 0.37 -19.48 16 2 C 0.25 9.11 15.43 89.44 1.38 10.49 16 3 C -0.05 -1.80 4.32 28.79 0.12 -1.68 16 4 C 0.08 2.76 4.70 86.30 0.41 3.17 16 5 N -0.54 -19.12 4.77 -913.15 -4.36 -23.47 16 6 C 0.21 8.90 4.53 85.56 0.39 9.28 16 7 C -0.52 -25.71 8.67 25.60 0.22 -25.48 16 8 H 0.06 2.90 7.26 -2.91 -0.02 2.88 16 9 C 0.02 0.81 5.46 84.65 0.46 1.27 16 10 N -0.92 -50.01 13.29 21.45 0.28 -49.73 16 11 Si 0.95 41.58 29.54 68.60 2.03 43.61 16 12 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 15 C 0.27 8.00 5.66 170.81 0.97 8.97 16 16 N -0.33 -8.45 3.53 -356.05 -1.26 -9.71 16 17 N -0.25 -5.27 11.71 -58.58 -0.69 -5.95 16 18 C 0.07 0.73 12.48 130.83 1.63 2.36 16 19 S 0.20 2.94 23.38 -56.49 -1.32 1.62 16 20 C 0.21 5.34 6.68 129.98 0.87 6.21 16 21 S -0.56 -18.50 26.40 -56.49 -1.49 -19.99 16 22 H 0.12 3.73 5.01 -2.39 -0.01 3.72 16 23 H 0.12 3.88 6.46 -2.39 -0.02 3.86 16 24 H 0.07 2.87 7.13 -2.39 -0.02 2.85 16 25 H 0.07 2.35 5.78 -2.38 -0.01 2.34 16 26 H 0.01 0.32 5.86 -2.39 -0.01 0.31 16 27 H 0.02 1.15 7.70 -2.39 -0.02 1.13 16 28 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 29 H 0.11 3.03 4.74 -2.38 -0.01 3.01 16 30 H 0.12 3.41 7.65 -2.39 -0.02 3.39 16 31 H 0.29 -0.39 8.06 -2.91 -0.02 -0.41 16 Total: -1.00 -67.57 294.36 1.21 -66.36 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: 1.19 Total: 2.14 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 6.45 Total: 14.60 kcal Atomic # 7 Polarization: -102.69 SS G_CDS: -5.64 Total: -108.34 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 16 Polarization: -15.55 SS G_CDS: -2.81 Total: -18.36 kcal Total: -67.57 1.21 -66.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000073756362.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.666 kcal (2) G-P(sol) polarization free energy of solvation -67.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds