Wall clock time and date at job start Tue Mar 31 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33342 * 119.99596 * 2 1 4 4 H 1.07998 * 119.99427 * 176.24261 * 3 2 1 5 5 C 1.46781 * 119.99795 * 355.97021 * 3 2 1 6 6 N 1.29319 * 119.99770 * 169.27879 * 5 3 2 7 7 Si 1.86798 * 120.00339 * 349.27559 * 5 3 2 8 8 H 1.48498 * 109.47035 * 91.84734 * 7 5 3 9 9 H 1.48500 * 109.47313 * 211.84941 * 7 5 3 10 10 H 1.48503 * 109.46783 * 331.84964 * 7 5 3 11 11 C 1.34772 * 120.00580 * 179.97438 * 2 1 3 12 12 O 1.21470 * 120.00366 * 176.01130 * 11 2 1 13 13 C 1.47706 * 119.99601 * 356.01654 * 11 2 1 14 14 C 1.39668 * 120.14767 * 37.17015 * 13 11 2 15 15 C 1.38025 * 119.83283 * 180.02562 * 14 13 11 16 16 Cl 1.73597 * 119.94013 * 179.97438 * 15 14 13 17 17 C 1.38520 * 120.12379 * 0.02562 * 15 14 13 18 18 C 1.38339 * 120.29835 * 0.02562 * 17 15 14 19 19 N 1.48014 * 119.91875 * 179.97438 * 18 17 15 20 20 O 1.31698 * 119.99597 * 359.97438 * 19 18 17 21 21 O 1.31694 * 119.99996 * 180.02562 * 19 18 17 22 22 C 1.37964 * 120.16413 * 359.67459 * 18 17 15 23 23 H 1.08996 * 109.46945 * 336.21641 * 1 2 3 24 24 H 1.08998 * 109.47064 * 96.22252 * 1 2 3 25 25 H 1.08996 * 109.46715 * 216.22011 * 1 2 3 26 26 H 0.97000 * 119.99826 * 179.97438 * 6 5 3 27 27 H 1.08006 * 120.08214 * 359.97069 * 14 13 11 28 28 H 1.07998 * 119.85187 * 179.97438 * 17 15 14 29 29 H 1.08000 * 120.06355 * 180.31739 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1317 1.1548 0.0000 4 1 3.2099 1.1558 0.0613 5 6 1.4003 2.4243 -0.0893 6 7 2.0173 3.5418 0.1178 7 14 -0.4214 2.4258 -0.5023 8 1 -1.2136 2.3892 0.7532 9 1 -0.7556 3.6568 -1.2628 10 1 -0.7432 1.2326 -1.3257 11 6 2.1390 -1.1671 0.0005 12 8 3.3515 -1.1684 -0.0726 13 6 1.4032 -2.4447 0.0900 14 6 0.1774 -2.5953 -0.5623 15 6 -0.5049 -3.7919 -0.4739 16 17 -2.0291 -3.9820 -1.2830 17 6 0.0236 -4.8410 0.2600 18 6 1.2369 -4.6972 0.9090 19 7 1.7936 -5.8236 1.6914 20 8 1.1339 -6.9607 1.7695 21 8 2.9482 -5.6883 2.3103 22 6 1.9321 -3.5086 0.8237 23 1 -0.3633 0.9404 0.4144 24 1 -0.3633 -0.1114 -1.0216 25 1 -0.3632 -0.8291 0.6072 26 1 1.5341 4.3808 0.0584 27 1 -0.2360 -1.7773 -1.1337 28 1 -0.5142 -5.7752 0.3266 29 1 2.8815 -3.3999 1.3269 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083798104.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:52 Heat of formation + Delta-G solvation = 73.209429 kcal Electronic energy + Delta-G solvation = -19624.758933 eV Core-core repulsion = 16160.331630 eV Total energy + Delta-G solvation = -3464.427303 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.60133 -39.12410 -37.98747 -36.72976 -35.41134 -34.42049 -33.03412 -31.94269 -31.20798 -27.79942 -26.70310 -25.95417 -23.27958 -22.49958 -20.14167 -18.40198 -18.05364 -17.86045 -17.02946 -16.35205 -16.12337 -16.00713 -15.63547 -15.09670 -14.86746 -14.07531 -13.79147 -13.27820 -13.13545 -12.80713 -12.53534 -12.12610 -12.07806 -11.82883 -11.47048 -11.32603 -11.12583 -10.81190 -10.73756 -10.67874 -10.11270 -9.63117 -9.45753 -9.23979 -8.81510 -8.56105 -7.07198 -4.04951 -0.75725 0.51334 0.93645 0.99030 1.73019 2.59482 2.63270 2.79170 2.90041 3.52854 3.60439 3.81033 4.36500 4.45683 4.47074 4.58410 4.70786 4.87988 4.99341 5.13266 5.44563 5.53495 5.56396 5.62912 5.68661 5.92190 6.15464 6.63018 6.75132 7.63540 7.87009 8.40736 8.78572 9.42077 9.97838 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.005740 C = 0.004573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.664050 B = 4876.566214 C = 6120.763858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.396 5.396 3 C -0.325 4.325 4 H 0.133 0.867 5 C 0.048 3.952 6 N -0.798 5.798 7 Si 0.895 3.105 8 H -0.272 1.272 9 H -0.288 1.288 10 H -0.238 1.238 11 C 0.431 3.569 12 O -0.575 6.575 13 C -0.069 4.069 14 C -0.075 4.075 15 C -0.030 4.030 16 Cl -0.046 7.046 17 C -0.070 4.070 18 C 0.005 3.995 19 N -0.014 5.014 20 O -0.177 6.177 21 O -0.164 6.164 22 C -0.008 4.008 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.293 0.707 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.660 -8.700 -1.975 13.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.108 5.108 3 C -0.453 4.453 4 H 0.150 0.850 5 C -0.169 4.169 6 N -0.427 5.427 7 Si 0.725 3.275 8 H -0.201 1.201 9 H -0.216 1.216 10 H -0.163 1.163 11 C 0.225 3.775 12 O -0.462 6.462 13 C -0.075 4.075 14 C -0.096 4.096 15 C -0.058 4.058 16 Cl -0.017 7.017 17 C -0.091 4.091 18 C -0.081 4.081 19 N 0.465 4.535 20 O -0.369 6.369 21 O -0.359 6.359 22 C -0.029 4.029 23 H 0.079 0.921 24 H 0.103 0.897 25 H 0.094 0.906 26 H 0.105 0.895 27 H 0.177 0.823 28 H 0.178 0.822 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.413 -7.906 -2.413 13.295 hybrid contribution -0.983 -0.081 0.128 0.994 sum -11.396 -7.987 -2.285 14.102 Atomic orbital electron populations 1.23386 0.83894 1.02002 1.01782 1.42676 1.04079 1.06538 1.57549 1.20651 0.95152 0.80349 1.49190 0.84956 1.27075 1.00141 0.94287 0.95410 1.68615 1.39477 0.99167 1.35474 0.87024 0.82097 0.78802 0.79623 1.20051 1.21643 1.16286 1.16849 0.87244 0.81501 0.91925 1.90668 1.12432 1.85070 1.57985 1.20092 0.93942 0.96048 0.97417 1.22104 0.93744 0.96651 0.97076 1.20434 0.90647 0.94717 0.99973 1.98398 1.28003 1.97594 1.77674 1.20695 0.93330 1.00219 0.94881 1.19921 0.97611 0.87163 1.03440 1.50360 1.01515 1.02858 0.98735 1.96251 1.59599 1.12183 1.68891 1.96304 1.03982 1.90397 1.45188 1.21227 0.99698 0.88416 0.93537 0.92103 0.89730 0.90586 0.89471 0.82318 0.82202 0.81621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 6.39 59.85 0.38 0.91 15 2 N -0.40 -8.56 2.93 -121.76 -0.36 -8.92 15 3 C -0.32 -8.17 10.32 -13.44 -0.14 -8.31 15 4 H 0.13 3.82 7.33 -52.49 -0.38 3.44 15 5 C 0.05 1.13 5.69 -15.16 -0.09 1.04 15 6 N -0.80 -19.76 13.88 56.00 0.78 -18.98 15 7 Si 0.89 16.46 24.32 -169.99 -4.13 12.32 15 8 H -0.27 -4.84 6.99 56.52 0.40 -4.45 15 9 H -0.29 -5.41 7.11 56.52 0.40 -5.01 15 10 H -0.24 -3.77 4.40 56.52 0.25 -3.53 15 11 C 0.43 9.34 7.31 -12.39 -0.09 9.25 15 12 O -0.57 -14.87 16.40 5.39 0.09 -14.78 15 13 C -0.07 -1.16 5.28 -104.97 -0.55 -1.72 15 14 C -0.07 -1.02 7.38 -39.13 -0.29 -1.31 15 15 C -0.03 -0.36 6.31 -39.56 -0.25 -0.61 15 16 Cl -0.05 -0.47 28.95 -51.86 -1.50 -1.97 15 17 C -0.07 -0.87 9.36 -39.44 -0.37 -1.24 15 18 C 0.01 0.08 6.88 -80.01 -0.55 -0.47 15 19 N -0.01 -0.23 4.98 33.93 0.17 -0.06 15 20 O -0.18 -2.86 19.14 -31.57 -0.60 -3.46 15 21 O -0.16 -2.88 19.14 -31.56 -0.60 -3.48 15 22 C -0.01 -0.13 9.15 -39.16 -0.36 -0.49 15 23 H 0.06 1.07 2.40 -51.93 -0.12 0.94 15 24 H 0.09 1.24 4.71 -51.93 -0.24 1.00 15 25 H 0.08 1.06 5.94 -51.93 -0.31 0.75 15 26 H 0.29 6.50 8.26 -40.82 -0.34 6.16 15 27 H 0.16 1.98 5.07 -52.48 -0.27 1.71 15 28 H 0.16 1.72 7.56 -52.49 -0.40 1.33 15 29 H 0.17 2.79 7.54 -52.49 -0.40 2.40 15 LS Contribution 271.11 15.07 4.09 4.09 Total: -1.00 -27.66 271.11 -5.80 -33.46 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -1.41 Total: 4.75 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: -2.30 Total: -2.95 kcal Atomic # 7 Polarization: -28.55 SS G_CDS: 0.59 Total: -27.96 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -1.12 Total: -21.73 kcal Atomic # 14 Polarization: 16.46 SS G_CDS: -4.13 Total: 12.32 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -27.66 -5.80 -33.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083798104.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.665 kcal (2) G-P(sol) polarization free energy of solvation -27.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds