Wall clock time and date at job start Tue Mar 31 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.33325 * 119.99819 * 2 1 4 4 H 1.08005 * 119.99762 * 144.13749 * 3 2 1 5 5 C 1.46781 * 120.00368 * 324.12975 * 3 2 1 6 6 N 1.29321 * 120.00023 * 160.40380 * 5 3 2 7 7 Si 1.86798 * 120.00266 * 340.40314 * 5 3 2 8 8 H 1.48499 * 109.47263 * 89.97361 * 7 5 3 9 9 H 1.48496 * 109.47661 * 209.97811 * 7 5 3 10 10 H 1.48504 * 109.47034 * 329.97756 * 7 5 3 11 11 C 1.34775 * 119.99695 * 180.02562 * 2 1 3 12 12 O 1.21466 * 119.99788 * 184.42397 * 11 2 1 13 13 C 1.47706 * 119.99921 * 4.43037 * 11 2 1 14 14 C 1.39664 * 120.14381 * 300.04671 * 13 11 2 15 15 C 1.38031 * 119.82810 * 179.97438 * 14 13 11 16 16 Cl 1.73605 * 119.93901 * 180.02562 * 15 14 13 17 17 C 1.38520 * 120.12832 * 359.75189 * 15 14 13 18 18 C 1.38340 * 120.29174 * 0.50181 * 17 15 14 19 19 C 1.37963 * 120.16975 * 359.50137 * 18 17 15 20 20 N 1.48013 * 120.06643 * 180.22794 * 19 18 17 21 21 O 1.31698 * 119.99957 * 354.68826 * 20 19 18 22 22 O 1.31696 * 119.99983 * 174.69166 * 20 19 18 23 23 H 1.08999 * 109.47242 * 265.89150 * 1 2 3 24 24 H 1.08997 * 109.47023 * 25.88716 * 1 2 3 25 25 H 1.08997 * 109.47003 * 145.88487 * 1 2 3 26 26 H 0.97004 * 120.00011 * 180.02562 * 6 5 3 27 27 H 1.07999 * 120.08871 * 359.96007 * 14 13 11 28 28 H 1.07993 * 119.85784 * 180.25583 * 17 15 14 29 29 H 1.08001 * 119.91436 * 179.76299 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1316 1.1546 0.0000 4 1 3.0581 1.2433 0.5480 5 6 1.6065 2.3053 -0.7448 6 7 2.0117 3.4998 -0.4594 7 14 0.3531 2.0444 -2.1050 8 1 -1.0165 2.1040 -1.5341 9 1 0.5081 3.1062 -3.1315 10 1 0.5711 0.7154 -2.7307 11 6 2.1389 -1.1672 -0.0005 12 8 3.3508 -1.1688 0.0806 13 6 1.4036 -2.4444 -0.0999 14 6 0.4615 -2.7888 0.8720 15 6 -0.2222 -3.9837 0.7724 16 17 -1.3943 -4.4144 1.9786 17 6 0.0208 -4.8373 -0.2911 18 6 0.9565 -4.5037 -1.2539 19 6 1.6470 -3.3125 -1.1663 20 7 2.6440 -2.9556 -2.2004 21 8 2.9491 -3.8191 -3.1469 22 8 3.2260 -1.7745 -2.1741 23 1 -0.3634 -0.0736 1.0250 24 1 -0.3633 0.9245 -0.4487 25 1 -0.3633 -0.8508 -0.5764 26 1 1.6644 4.2602 -0.9514 27 1 0.2688 -2.1221 1.6995 28 1 -0.5197 -5.7692 -0.3669 29 1 1.1439 -5.1756 -2.0784 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101515567.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:04 Heat of formation + Delta-G solvation = 43.493584 kcal Electronic energy + Delta-G solvation = -20324.752025 eV Core-core repulsion = 16859.036147 eV Total energy + Delta-G solvation = -3465.715878 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.32053 -38.41428 -37.65494 -36.53938 -35.16576 -33.47164 -33.01230 -31.44742 -31.26170 -27.01035 -26.40048 -25.30494 -23.36295 -21.99222 -19.98588 -18.11560 -17.58678 -17.29588 -17.00961 -16.26034 -15.60978 -15.39513 -15.19471 -14.71999 -14.24085 -13.94776 -13.53643 -13.15608 -13.05429 -12.73634 -12.58839 -12.19249 -11.85701 -11.66166 -11.29009 -11.20732 -10.83339 -10.47161 -10.39236 -10.08003 -9.81332 -9.64957 -9.29713 -9.12888 -8.77551 -8.35688 -7.19744 -4.04792 -0.42948 0.82395 1.35496 1.69860 1.96597 2.65073 2.87671 2.93787 3.10530 3.53977 3.60335 4.00915 4.32888 4.48465 4.64148 4.88520 4.93658 5.18698 5.44016 5.56413 5.58977 5.72087 5.83067 5.90282 5.93422 6.17883 6.59257 6.65356 7.61406 7.73637 7.78552 8.37852 8.71641 9.44805 9.83407 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.016204 B = 0.007296 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.553833 B = 3836.929927 C = 4799.950163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.415 5.415 3 C -0.264 4.264 4 H 0.125 0.875 5 C 0.058 3.942 6 N -0.773 5.773 7 Si 0.891 3.109 8 H -0.262 1.262 9 H -0.274 1.274 10 H -0.251 1.251 11 C 0.461 3.539 12 O -0.528 6.528 13 C -0.038 4.038 14 C -0.095 4.095 15 C -0.003 4.003 16 Cl -0.056 7.056 17 C -0.129 4.129 18 C -0.042 4.042 19 C 0.013 3.987 20 N -0.019 5.019 21 O -0.269 6.269 22 O -0.133 6.133 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.060 0.940 26 H 0.297 0.703 27 H 0.153 0.847 28 H 0.149 0.851 29 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.220 -9.353 2.717 14.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.131 5.131 3 C -0.396 4.396 4 H 0.143 0.857 5 C -0.163 4.163 6 N -0.402 5.402 7 Si 0.716 3.284 8 H -0.189 1.189 9 H -0.200 1.200 10 H -0.174 1.174 11 C 0.253 3.747 12 O -0.408 6.408 13 C -0.046 4.046 14 C -0.115 4.115 15 C -0.030 4.030 16 Cl -0.027 7.027 17 C -0.149 4.149 18 C -0.061 4.061 19 C -0.078 4.078 20 N 0.433 4.567 21 O -0.429 6.429 22 O -0.325 6.325 23 H 0.086 0.914 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.109 0.891 27 H 0.170 0.830 28 H 0.167 0.833 29 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -11.010 -9.477 3.082 14.850 hybrid contribution -0.541 0.073 -0.888 1.042 sum -11.551 -9.404 2.194 15.056 Atomic orbital electron populations 1.22406 0.82530 1.02420 1.02272 1.42953 1.04798 1.05587 1.59808 1.20675 1.09256 0.84053 1.25585 0.85741 1.27330 0.97663 0.94393 0.96959 1.68665 1.36448 0.99716 1.35344 0.86725 0.79582 0.80858 0.81211 1.18882 1.19985 1.17447 1.17674 0.87469 0.82273 0.87234 1.90701 1.12399 1.85270 1.52471 1.20029 0.96352 0.95456 0.92719 1.21194 0.94973 0.96087 0.99272 1.21041 0.94000 0.95857 0.92148 1.98386 1.56485 1.92894 1.54968 1.20874 0.99866 1.00788 0.93377 1.20817 0.92633 0.93655 0.99032 1.20105 0.97374 0.98534 0.91824 1.50002 1.01631 1.02855 1.02176 1.96152 1.71805 1.45077 1.29884 1.96392 1.52007 1.02798 1.81329 0.91360 0.90976 0.92122 0.89074 0.82965 0.83286 0.82580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.82 7.99 59.85 0.48 1.30 15 2 N -0.41 -9.35 2.60 -121.76 -0.32 -9.66 15 3 C -0.26 -6.64 9.66 -13.45 -0.13 -6.77 15 4 H 0.13 3.49 7.78 -52.48 -0.41 3.08 15 5 C 0.06 1.37 5.50 -15.16 -0.08 1.28 15 6 N -0.77 -18.54 13.88 56.00 0.78 -17.76 15 7 Si 0.89 18.04 25.15 -169.99 -4.28 13.76 15 8 H -0.26 -4.71 6.56 56.52 0.37 -4.34 15 9 H -0.27 -5.46 7.11 56.52 0.40 -5.06 15 10 H -0.25 -5.45 7.11 56.52 0.40 -5.04 15 11 C 0.46 10.84 5.41 -12.39 -0.07 10.77 15 12 O -0.53 -14.61 14.77 -18.38 -0.27 -14.88 15 13 C -0.04 -0.73 4.49 -104.97 -0.47 -1.20 15 14 C -0.10 -1.41 7.97 -39.12 -0.31 -1.72 15 15 C 0.00 -0.03 6.31 -39.55 -0.25 -0.28 15 16 Cl -0.06 -0.59 28.95 -51.86 -1.50 -2.09 15 17 C -0.13 -1.50 9.82 -39.44 -0.39 -1.88 15 18 C -0.04 -0.61 9.57 -39.64 -0.38 -0.99 15 19 C 0.01 0.26 6.90 -79.52 -0.55 -0.29 15 20 N -0.02 -0.45 4.98 34.17 0.17 -0.28 15 21 O -0.27 -6.15 19.16 -31.57 -0.60 -6.76 15 22 O -0.13 -3.58 15.73 -39.74 -0.63 -4.20 15 23 H 0.07 0.99 7.71 -51.93 -0.40 0.59 15 24 H 0.07 1.30 2.96 -51.93 -0.15 1.14 15 25 H 0.06 0.97 6.58 -51.93 -0.34 0.63 15 26 H 0.30 6.35 8.26 -40.82 -0.34 6.02 15 27 H 0.15 2.01 7.46 -52.49 -0.39 1.62 15 28 H 0.15 1.23 8.06 -52.49 -0.42 0.81 15 29 H 0.16 1.99 7.58 -52.49 -0.40 1.59 15 LS Contribution 276.03 15.07 4.16 4.16 Total: -1.00 -30.14 276.03 -6.32 -36.46 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -1.68 Total: 1.04 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -2.15 Total: 0.22 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.63 Total: -27.71 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -1.50 Total: -25.84 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -4.28 Total: 13.76 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.14 -6.32 -36.46 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101515567.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.952 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds