Wall clock time and date at job start Tue Mar 31 2020 05:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33326 * 119.99571 * 2 1 4 4 H 1.08000 * 120.00030 * 201.76775 * 3 2 1 5 5 C 1.46780 * 120.00144 * 21.77023 * 3 2 1 6 6 N 1.29320 * 119.99878 * 10.08766 * 5 3 2 7 7 Si 1.86806 * 120.00209 * 190.08343 * 5 3 2 8 8 H 1.48497 * 109.46681 * 60.00212 * 7 5 3 9 9 H 1.48496 * 109.47030 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47231 * 300.00080 * 7 5 3 11 11 C 1.34773 * 120.00162 * 180.02562 * 2 1 3 12 12 O 1.21490 * 119.99822 * 180.02562 * 11 2 1 13 13 C 1.47609 * 120.00381 * 359.97438 * 11 2 1 14 14 C 1.39829 * 120.16641 * 90.24975 * 13 11 2 15 15 Cl 1.73600 * 120.09591 * 0.02562 * 14 13 11 16 16 C 1.38090 * 119.80645 * 180.27798 * 14 13 11 17 17 C 1.38325 * 120.14221 * 359.74977 * 16 14 13 18 18 C 1.38406 * 120.33021 * 359.97438 * 17 16 14 19 19 C 1.37912 * 120.19346 * 359.97438 * 18 17 16 20 20 N 1.48018 * 120.06958 * 180.02562 * 19 18 17 21 21 O 1.31695 * 119.99906 * 359.97438 * 20 19 18 22 22 O 1.31695 * 119.99695 * 179.71982 * 20 19 18 23 23 H 1.09005 * 109.46958 * 272.96718 * 1 2 3 24 24 H 1.08999 * 109.47475 * 32.97410 * 1 2 3 25 25 H 1.09007 * 109.46605 * 152.97412 * 1 2 3 26 26 H 0.97006 * 119.99952 * 180.02562 * 6 5 3 27 27 H 1.08005 * 119.92800 * 179.72637 * 16 14 13 28 28 H 1.08003 * 119.83569 * 179.97438 * 17 16 14 29 29 H 1.08005 * 119.90020 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1316 1.1547 0.0000 4 1 3.1538 1.1881 -0.3469 5 6 1.4761 2.3805 0.4714 6 7 0.3296 2.3130 1.0658 7 14 2.2982 4.0379 0.2130 8 1 2.4940 4.2720 -1.2402 9 1 1.4380 5.1100 0.7751 10 1 3.6155 4.0493 0.8982 11 6 2.1389 -1.1671 -0.0005 12 8 3.3538 -1.1671 -0.0001 13 6 1.4010 -2.4455 -0.0005 14 6 1.0538 -3.0565 -1.2094 15 17 1.4900 -2.3140 -2.7168 16 6 0.3584 -4.2495 -1.2008 17 6 0.0104 -4.8419 -0.0003 18 6 0.3561 -4.2451 1.1997 19 6 1.0515 -3.0542 1.2071 20 7 1.4203 -2.4187 2.4921 21 8 1.0839 -2.9903 3.6298 22 8 2.0891 -1.2842 2.4975 23 1 -0.3633 0.0532 1.0263 24 1 -0.3634 0.8621 -0.5593 25 1 -0.3633 -0.9155 -0.4670 26 1 -0.1038 3.1232 1.3770 27 1 0.0854 -4.7208 -2.1334 28 1 -0.5338 -5.7748 0.0007 29 1 0.0804 -4.7136 2.1331 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104330660.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:55 Heat of formation + Delta-G solvation = 37.495803 kcal Electronic energy + Delta-G solvation = -20581.356980 eV Core-core repulsion = 17115.381018 eV Total energy + Delta-G solvation = -3465.975962 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.15704 -38.17729 -37.44746 -36.31837 -35.05468 -33.37180 -32.43784 -31.45205 -30.93986 -26.77991 -26.17503 -24.97454 -23.07079 -21.99127 -19.97395 -18.06382 -17.42125 -17.17203 -16.74713 -15.66902 -15.45931 -15.12845 -15.08396 -14.64372 -14.35660 -13.80931 -13.35044 -13.06951 -12.35794 -12.21965 -11.88312 -11.66596 -11.58919 -11.50132 -11.15422 -10.93112 -10.77955 -10.60362 -10.32748 -10.07743 -9.72290 -9.47124 -9.30339 -8.98188 -8.65496 -8.28885 -6.96664 -3.80498 -0.30724 0.90450 1.47508 1.82245 2.24606 2.93082 3.01041 3.02654 3.32158 3.53898 3.77065 4.30373 4.56637 4.60875 4.92486 5.03028 5.05868 5.16868 5.47288 5.87673 5.91971 6.00124 6.02074 6.25356 6.51983 6.75046 6.78122 6.88164 7.57467 7.74427 7.95820 8.67549 8.92773 9.64387 10.00423 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.018157 B = 0.007699 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.718443 B = 3636.185323 C = 4565.124032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.387 5.387 3 C -0.261 4.261 4 H 0.120 0.880 5 C 0.032 3.968 6 N -0.797 5.797 7 Si 0.942 3.058 8 H -0.264 1.264 9 H -0.277 1.277 10 H -0.261 1.261 11 C 0.470 3.530 12 O -0.551 6.551 13 C -0.039 4.039 14 C -0.017 4.017 15 Cl -0.038 7.038 16 C -0.085 4.085 17 C -0.114 4.114 18 C -0.063 4.063 19 C 0.029 3.971 20 N -0.018 5.018 21 O -0.276 6.276 22 O -0.156 6.156 23 H 0.064 0.936 24 H 0.079 0.921 25 H 0.031 0.969 26 H 0.289 0.711 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 -7.576 -6.703 11.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.101 5.101 3 C -0.394 4.394 4 H 0.137 0.863 5 C -0.185 4.185 6 N -0.431 5.431 7 Si 0.766 3.234 8 H -0.189 1.189 9 H -0.202 1.202 10 H -0.185 1.185 11 C 0.260 3.740 12 O -0.435 6.435 13 C -0.047 4.047 14 C -0.045 4.045 15 Cl -0.009 7.009 16 C -0.105 4.105 17 C -0.133 4.133 18 C -0.082 4.082 19 C -0.062 4.062 20 N 0.423 4.577 21 O -0.431 6.431 22 O -0.338 6.338 23 H 0.083 0.917 24 H 0.098 0.902 25 H 0.050 0.950 26 H 0.102 0.898 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.493 -7.756 -6.973 11.788 hybrid contribution 0.165 0.885 0.389 0.981 sum -5.328 -6.871 -6.584 10.906 Atomic orbital electron populations 1.21774 0.80596 0.99690 1.02457 1.42725 1.06007 1.04655 1.56699 1.21158 1.00065 0.82685 1.35534 0.86293 1.27256 0.95764 1.01368 0.94123 1.68992 1.14808 1.32198 1.27077 0.85714 0.79847 0.78162 0.79691 1.18864 1.20193 1.18532 1.17237 0.87386 0.82264 0.87117 1.90632 1.12356 1.85596 1.54931 1.19883 0.97090 0.97651 0.90029 1.20779 1.01268 0.95415 0.87064 1.98399 1.91613 1.82022 1.28874 1.21234 0.96019 0.93435 0.99785 1.21011 1.01327 1.00798 0.90186 1.20986 0.94279 0.92263 1.00722 1.20055 1.07035 0.97282 0.81848 1.49872 1.02391 1.02764 1.02658 1.96135 1.63927 1.66693 1.16392 1.96359 1.36901 1.04968 1.95550 0.91748 0.90202 0.95009 0.89828 0.83564 0.83315 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 69. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.16 8.56 59.85 0.51 2.67 15 2 N -0.39 -9.61 2.76 -121.79 -0.34 -9.94 15 3 C -0.26 -6.71 9.51 -13.45 -0.13 -6.83 15 4 H 0.12 3.15 7.43 -52.49 -0.39 2.76 15 5 C 0.03 0.74 5.30 -15.16 -0.08 0.66 15 6 N -0.80 -18.80 10.59 56.00 0.59 -18.21 15 7 Si 0.94 18.18 29.66 -169.99 -5.04 13.14 15 8 H -0.26 -4.96 7.11 56.52 0.40 -4.56 15 9 H -0.28 -5.15 7.11 56.52 0.40 -4.75 15 10 H -0.26 -5.17 7.11 56.52 0.40 -4.77 15 11 C 0.47 11.79 3.44 -12.44 -0.04 11.74 15 12 O -0.55 -15.74 16.54 -6.07 -0.10 -15.84 15 13 C -0.04 -0.81 3.87 -104.94 -0.41 -1.22 15 14 C -0.02 -0.29 5.94 -39.04 -0.23 -0.52 15 15 Cl -0.04 -0.63 28.04 -51.86 -1.45 -2.08 15 16 C -0.08 -1.05 9.82 -39.60 -0.39 -1.44 15 17 C -0.11 -1.30 10.04 -39.49 -0.40 -1.69 15 18 C -0.06 -0.95 9.57 -39.64 -0.38 -1.33 15 19 C 0.03 0.60 6.91 -79.53 -0.55 0.05 15 20 N -0.02 -0.45 4.98 34.17 0.17 -0.28 15 21 O -0.28 -6.60 19.15 -31.56 -0.60 -7.20 15 22 O -0.16 -4.36 16.79 -36.36 -0.61 -4.97 15 23 H 0.06 1.52 7.54 -51.93 -0.39 1.13 15 24 H 0.08 1.71 7.02 -51.93 -0.36 1.35 15 25 H 0.03 0.61 6.45 -51.93 -0.33 0.28 15 26 H 0.29 6.24 8.26 -40.82 -0.34 5.91 15 27 H 0.15 1.27 8.06 -52.48 -0.42 0.85 15 28 H 0.15 1.05 8.06 -52.48 -0.42 0.63 15 29 H 0.15 2.06 7.57 -52.48 -0.40 1.66 15 LS Contribution 283.18 15.07 4.27 4.27 Total: -1.00 -31.48 283.18 -7.06 -38.54 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -1.86 Total: 0.48 kcal Atomic # 6 Polarization: 4.18 SS G_CDS: -2.09 Total: 2.09 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 0.43 Total: -28.43 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -1.32 Total: -28.01 kcal Atomic # 14 Polarization: 18.18 SS G_CDS: -5.04 Total: 13.14 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.45 Total: -2.08 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.48 -7.06 -38.54 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104330660.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.038 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds