Wall clock time and date at job start Tue Mar 31 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86801 * 119.99910 * 2 1 4 4 H 1.48498 * 109.46831 * 269.99794 * 3 2 1 5 5 H 1.48499 * 109.47061 * 29.99517 * 3 2 1 6 6 H 1.48499 * 109.47342 * 149.99683 * 3 2 1 7 7 C 1.38795 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99866 * 180.02562 * 7 2 1 9 9 S 1.76199 * 120.00307 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00217 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47152 * 180.02562 * 10 9 7 12 12 O 1.20824 * 120.00048 * 0.02562 * 11 10 9 13 13 O 1.34235 * 120.00281 * 180.02562 * 11 10 9 14 14 C 1.45194 * 117.00385 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47339 * 179.97438 * 14 13 11 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 13 17 17 C 1.38224 * 120.01147 * 99.99850 * 16 15 14 18 18 C 1.38218 * 120.02596 * 179.97438 * 17 16 15 19 19 C 1.38270 * 120.05109 * 0.02732 * 18 17 16 20 20 C 1.38170 * 120.02397 * 359.97438 * 19 18 17 21 21 C 1.38432 * 120.01370 * 279.72550 * 16 15 14 22 22 F 1.35102 * 120.02704 * 359.97438 * 21 16 15 23 23 H 0.97002 * 120.00347 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.46914 * 59.99873 * 10 9 7 25 25 H 1.09000 * 109.47109 * 300.00097 * 10 9 7 26 26 H 1.09002 * 109.47239 * 59.99675 * 14 13 11 27 27 H 1.08998 * 109.46869 * 300.00400 * 14 13 11 28 28 H 1.09002 * 109.47153 * 59.99705 * 15 14 13 29 29 H 1.09001 * 109.46832 * 299.99896 * 15 14 13 30 30 H 1.08002 * 119.98697 * 359.97438 * 17 16 15 31 31 H 1.07999 * 119.97411 * 180.02562 * 18 17 16 32 32 H 1.07995 * 119.98601 * 179.97438 * 19 18 17 33 33 H 1.08004 * 120.01264 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4403 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7957 -5.5015 -0.0010 13 8 2.8408 -6.3389 0.0003 14 6 2.2612 -7.6701 -0.0009 15 6 3.3801 -8.7136 -0.0009 16 6 2.7785 -10.0953 -0.0015 17 6 2.6935 -10.8118 -1.1805 18 6 2.1423 -12.0793 -1.1814 19 6 1.6748 -12.6318 -0.0032 20 6 1.7588 -11.9175 1.1765 21 6 2.3161 -10.6497 1.1796 22 9 2.4042 -9.9528 2.3336 23 1 -0.4851 0.8400 -0.0004 24 1 3.1245 -3.7313 0.8905 25 1 3.1245 -3.7313 -0.8894 26 1 1.6459 -7.7978 -0.8916 27 1 1.6441 -7.7985 0.8883 28 1 3.9958 -8.5861 0.8896 29 1 3.9968 -8.5850 -0.8904 30 1 3.0579 -10.3810 -2.1014 31 1 2.0766 -12.6385 -2.1030 32 1 1.2439 -13.6221 -0.0052 33 1 1.3932 -12.3491 2.0966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108628590.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:10 Heat of formation + Delta-G solvation = -117.522439 kcal Electronic energy + Delta-G solvation = -18541.659971 eV Core-core repulsion = 15186.918753 eV Total energy + Delta-G solvation = -3354.741218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.067 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.15119 -40.05927 -39.37395 -36.32450 -33.88964 -32.48001 -30.93981 -30.07514 -28.68141 -25.56361 -24.14011 -23.13216 -21.45787 -20.96163 -18.00429 -17.79767 -17.18440 -16.93304 -16.20539 -16.02609 -16.00492 -15.49298 -14.84183 -14.55407 -14.21334 -14.14242 -13.60890 -13.49834 -13.26674 -12.69127 -12.60213 -12.50780 -12.05922 -11.75558 -11.56657 -11.33836 -11.09476 -11.06259 -10.81253 -10.38573 -10.00983 -9.90065 -9.34905 -9.11018 -9.00335 -8.35057 -6.59701 -6.26703 -3.99374 0.75512 0.82894 2.63075 2.68014 3.18776 3.21064 3.26003 3.29760 3.53192 3.92771 4.15251 4.32423 4.38055 4.58128 4.77037 4.84946 4.92411 5.01461 5.09079 5.18208 5.26943 5.43823 5.49967 5.58639 5.69309 5.77379 5.79353 5.84066 5.98489 6.03642 6.09127 6.51846 6.70568 7.55926 8.18288 8.30960 9.18700 10.80826 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.048728 B = 0.002620 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.479452 B =10682.452615 C =10715.228394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.536 4.536 8 H 0.076 0.924 9 S -0.059 6.059 10 C -0.128 4.128 11 C 0.479 3.521 12 O -0.488 6.488 13 O -0.361 6.361 14 C 0.072 3.928 15 C -0.079 4.079 16 C -0.116 4.116 17 C -0.084 4.084 18 C -0.130 4.130 19 C -0.093 4.093 20 C -0.153 4.153 21 C 0.105 3.895 22 F -0.134 7.134 23 H 0.269 0.731 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.993 -24.325 -1.192 25.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.748 3.252 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.684 4.684 8 H 0.094 0.906 9 S 0.167 5.833 10 C -0.276 4.276 11 C 0.320 3.680 12 O -0.373 6.373 13 O -0.279 6.279 14 C -0.003 4.003 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.102 4.102 18 C -0.148 4.148 19 C -0.111 4.111 20 C -0.172 4.172 21 C 0.085 3.915 22 F -0.113 7.113 23 H 0.079 0.921 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.150 0.850 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 5.341 -24.478 -1.137 25.080 hybrid contribution 1.737 1.241 0.246 2.149 sum 7.078 -23.237 -0.891 24.307 Atomic orbital electron populations 1.70013 1.05992 1.27632 1.46625 1.25009 0.95071 0.99126 0.94354 0.86114 0.79408 0.81266 0.78411 1.20191 1.20712 1.19579 1.22844 0.95030 0.91154 1.59338 0.90572 1.85427 1.04408 0.96575 1.96882 1.23294 1.06949 0.90857 1.06495 1.23308 0.85192 0.87063 0.72402 1.90669 1.16952 1.85644 1.44025 1.86473 1.41346 1.15202 1.84899 1.22874 0.95458 0.78936 1.02992 1.20429 0.97504 0.88496 1.05207 1.19757 1.02293 0.97038 0.92640 1.21040 0.97868 0.94240 0.97031 1.21235 0.99260 0.95689 0.98590 1.21050 0.98397 0.99886 0.91771 1.21186 1.02135 0.93655 1.00251 1.17634 1.00966 0.91161 0.81713 1.91528 1.94012 1.78666 1.47054 0.92071 0.87876 0.87889 0.91023 0.91158 0.89337 0.89086 0.84688 0.85145 0.84975 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.83 16 8 H 0.08 2.03 7.80 -52.48 -0.41 1.62 16 9 S -0.06 -1.60 20.58 -107.50 -2.21 -3.81 16 10 C -0.13 -2.65 6.27 36.00 0.23 -2.43 16 11 C 0.48 9.47 7.98 36.00 0.29 9.76 16 12 O -0.49 -11.05 15.61 -18.75 -0.29 -11.34 16 13 O -0.36 -5.91 10.22 -39.27 -0.40 -6.31 16 14 C 0.07 0.98 5.45 37.16 0.20 1.18 16 15 C -0.08 -0.82 5.45 -27.88 -0.15 -0.97 16 16 C -0.12 -1.13 5.14 -104.55 -0.54 -1.67 16 17 C -0.08 -0.66 9.67 -39.59 -0.38 -1.04 16 18 C -0.13 -0.87 10.04 -39.58 -0.40 -1.26 16 19 C -0.09 -0.63 10.04 -39.59 -0.40 -1.02 16 20 C -0.15 -1.27 10.03 -39.52 -0.40 -1.67 16 21 C 0.10 1.09 7.24 -39.42 -0.29 0.80 16 22 F -0.13 -1.62 16.66 2.25 0.04 -1.58 16 23 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 24 H 0.10 1.98 8.14 -51.92 -0.42 1.56 16 25 H 0.10 1.96 8.14 -51.92 -0.42 1.53 16 26 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 27 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 28 H 0.09 0.93 7.94 -51.93 -0.41 0.51 16 29 H 0.09 0.80 8.01 -51.93 -0.42 0.38 16 30 H 0.14 0.81 8.04 -52.49 -0.42 0.39 16 31 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 33 H 0.14 0.90 8.06 -52.48 -0.42 0.48 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -33.10 316.28 -7.78 -40.88 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.75 Total: -2.47 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -1.64 Total: -11.16 kcal Atomic # 7 Polarization: -25.93 SS G_CDS: 0.73 Total: -25.20 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.69 Total: -17.65 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -33.10 -7.78 -40.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108628590.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.643 kcal (2) G-P(sol) polarization free energy of solvation -33.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds