Wall clock time and date at job start Tue Mar 31 2020 05:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 119.99900 * 2 1 4 4 H 1.48499 * 109.47014 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47080 * 300.00309 * 3 2 1 6 6 H 1.48500 * 109.46916 * 60.00280 * 3 2 1 7 7 C 1.37876 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00229 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47000 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47067 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54379 * 68.37556 * 11 10 9 13 13 O 1.42099 * 110.54069 * 291.62281 * 11 10 9 14 14 O 1.52200 * 104.45090 * 179.97438 * 11 10 9 15 15 C 1.35601 * 113.99941 * 74.99548 * 14 11 10 16 16 C 1.38683 * 120.17278 * 269.95533 * 15 14 11 17 17 C 1.38050 * 120.11330 * 180.02562 * 16 15 14 18 18 C 1.38635 * 120.45286 * 0.02562 * 17 16 15 19 19 C 1.37674 * 120.33597 * 0.02562 * 18 17 16 20 20 C 1.40012 * 119.88240 * 359.97438 * 19 18 17 21 21 C 1.46785 * 120.22034 * 180.02562 * 20 19 18 22 22 O 1.21293 * 120.00523 * 0.02562 * 21 20 19 23 23 H 0.96996 * 120.00271 * 359.97438 * 1 2 3 24 24 H 1.08994 * 109.47118 * 60.00384 * 9 7 2 25 25 H 1.09000 * 109.46925 * 300.00032 * 9 7 2 26 26 H 1.09004 * 109.47464 * 59.99894 * 10 9 7 27 27 H 1.09000 * 109.47210 * 299.99738 * 10 9 7 28 28 H 1.07999 * 119.94598 * 0.04542 * 16 15 14 29 29 H 1.07994 * 119.77766 * 180.27601 * 17 16 15 30 30 H 1.08000 * 119.82889 * 179.97438 * 18 17 16 31 31 H 1.08006 * 120.05229 * 179.97438 * 19 18 17 32 32 H 1.08005 * 120.00197 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 8 0.6648 -5.4194 -1.2386 13 8 0.6640 -5.4200 1.2354 14 8 2.4249 -6.2989 -0.0019 15 6 3.0432 -6.4567 1.1945 16 6 4.1726 -5.7117 1.4992 17 6 4.8015 -5.8738 2.7174 18 6 4.3125 -6.7803 3.6454 19 6 3.1934 -7.5303 3.3619 20 6 2.5445 -7.3772 2.1307 21 6 1.3503 -8.1726 1.8210 22 8 0.9222 -8.9654 2.6330 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 0.8895 27 1 2.8719 -3.6043 -0.8905 28 1 4.5606 -5.0032 0.7823 29 1 5.6779 -5.2876 2.9507 30 1 4.8127 -6.8993 4.5952 31 1 2.8166 -8.2355 4.0881 32 1 0.8528 -8.0519 0.8700 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111324157.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:00 Heat of formation + Delta-G solvation = -114.702931 kcal Electronic energy + Delta-G solvation = -20230.414591 eV Core-core repulsion = 16863.422846 eV Total energy + Delta-G solvation = -3366.991744 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.060 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.36789 -39.10187 -37.87746 -36.91857 -35.82611 -34.04379 -31.78743 -31.27678 -30.70790 -25.87162 -25.28291 -23.72982 -21.84969 -21.49851 -20.37663 -18.38809 -17.72108 -17.55046 -16.89098 -16.49866 -15.72316 -15.31929 -14.94446 -14.71561 -14.64065 -14.38478 -14.23797 -13.60514 -13.23333 -13.03396 -12.60980 -12.41196 -12.21864 -11.91572 -11.90282 -11.80868 -11.52469 -11.16717 -11.08598 -10.51385 -10.50122 -9.99957 -9.84287 -9.41524 -9.35958 -9.12299 -8.57889 -6.19703 -4.25964 -0.01516 0.49885 0.98113 2.21408 2.25638 3.20701 3.28195 3.30879 3.34142 3.86911 3.95895 4.13796 4.30499 4.34379 4.53546 4.72683 4.85553 4.90556 5.15715 5.19537 5.37552 5.46609 5.48849 5.68617 5.78221 5.93965 6.00833 6.30453 6.44255 7.16726 7.18818 7.24291 7.72682 8.07651 8.77242 9.39430 10.91350 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.022718 B = 0.005099 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.203310 B = 5490.427883 C = 6164.831030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.030 3.970 10 C -0.607 4.607 11 S 2.563 3.437 12 O -0.929 6.929 13 O -0.956 6.956 14 O -0.674 6.674 15 C 0.127 3.873 16 C -0.141 4.141 17 C -0.067 4.067 18 C -0.122 4.122 19 C -0.045 4.045 20 C -0.169 4.169 21 C 0.395 3.605 22 O -0.452 6.452 23 H 0.266 0.734 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.124 0.876 27 H 0.128 0.872 28 H 0.151 0.849 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.772 -12.636 5.040 17.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.009 4.009 10 C -0.739 4.739 11 S 2.664 3.336 12 O -0.927 6.927 13 O -0.955 6.955 14 O -0.632 6.632 15 C 0.084 3.916 16 C -0.161 4.161 17 C -0.085 4.085 18 C -0.141 4.141 19 C -0.064 4.064 20 C -0.172 4.172 21 C 0.253 3.747 22 O -0.325 6.325 23 H 0.075 0.925 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.142 0.858 27 H 0.147 0.853 28 H 0.169 0.831 29 H 0.162 0.838 30 H 0.158 0.842 31 H 0.164 0.836 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.853 -13.592 5.259 17.592 hybrid contribution 0.787 1.700 -0.336 1.903 sum 10.641 -11.892 4.923 16.700 Atomic orbital electron populations 1.69953 1.06140 1.27244 1.49347 1.25066 0.94976 0.99592 0.94781 0.86401 0.79882 0.83088 0.77836 1.19627 1.20740 1.20755 1.21004 0.93093 0.89569 1.52450 0.91894 1.18980 0.92496 0.90234 0.99175 1.30691 1.14243 1.18271 1.10662 1.06461 0.75270 0.77116 0.74750 1.93610 1.69944 1.84371 1.44747 1.93620 1.72395 1.83798 1.45671 1.85721 1.65208 1.72217 1.40091 1.18228 0.94140 0.98407 0.80786 1.21483 0.94872 1.00640 0.99143 1.21327 0.99063 0.96312 0.91834 1.21345 0.96426 0.96055 1.00244 1.21401 0.93388 0.97233 0.94345 1.21009 1.00199 1.00421 0.95554 1.23679 0.81999 0.77937 0.91111 1.90501 1.61616 1.30433 1.49916 0.92468 0.94587 0.94551 0.85765 0.85349 0.83113 0.83803 0.84241 0.83600 0.88294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -13.85 9.11 -34.44 -0.31 -14.16 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.03 0.73 4.98 -27.88 -0.14 0.59 16 10 C -0.61 -10.99 5.40 37.16 0.20 -10.79 16 11 S 2.56 45.55 5.10 -107.50 -0.55 45.01 16 12 O -0.93 -19.18 18.09 -67.04 -1.21 -20.40 16 13 O -0.96 -18.50 15.26 -67.03 -1.02 -19.52 16 14 O -0.67 -9.97 9.25 -50.83 -0.47 -10.44 16 15 C 0.13 1.72 4.81 -38.59 -0.19 1.53 16 16 C -0.14 -1.52 8.45 -39.49 -0.33 -1.85 16 17 C -0.07 -0.57 10.03 -39.50 -0.40 -0.97 16 18 C -0.12 -1.02 10.02 -39.64 -0.40 -1.42 16 19 C -0.05 -0.49 9.59 -39.12 -0.38 -0.87 16 20 C -0.17 -2.28 5.31 -104.95 -0.56 -2.84 16 21 C 0.39 5.79 10.01 34.19 0.34 6.14 16 22 O -0.45 -7.29 17.16 5.55 0.10 -7.19 16 23 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 24 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.12 1.95 6.61 -51.92 -0.34 1.60 16 27 H 0.13 2.04 8.14 -51.92 -0.42 1.62 16 28 H 0.15 1.33 7.50 -52.49 -0.39 0.93 16 29 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 30 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.15 1.39 7.65 -52.48 -0.40 0.98 16 32 H 0.10 1.35 7.53 -52.48 -0.40 0.96 16 LS Contribution 298.05 15.07 4.49 4.49 Total: -1.00 -34.04 298.05 -8.39 -42.43 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: -3.19 Total: -1.74 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -2.25 Total: -23.13 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.74 Total: -25.04 kcal Atomic # 8 Polarization: -54.93 SS G_CDS: -2.61 Total: -57.54 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 45.55 SS G_CDS: -0.55 Total: 45.01 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -34.04 -8.39 -42.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111324157.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.270 kcal (2) G-P(sol) polarization free energy of solvation -34.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds