Wall clock time and date at job start Tue Mar 31 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21273 * 119.99571 * 2 1 4 4 N 1.34770 * 119.99955 * 180.02562 * 2 1 3 5 5 C 1.38890 * 119.99892 * 180.02562 * 4 2 1 6 6 N 1.29494 * 125.25581 * 179.97438 * 5 4 2 7 7 C 1.33679 * 115.67204 * 179.97438 * 6 5 4 8 8 C 1.47035 * 122.51815 * 179.97438 * 7 6 5 9 9 O 1.21576 * 119.99782 * 180.02562 * 8 7 6 10 10 O 1.34819 * 120.00204 * 0.02562 * 8 7 6 11 11 C 1.45196 * 116.99837 * 179.97438 * 10 8 7 12 12 H 1.08998 * 109.47735 * 330.00321 * 11 10 8 13 13 C 1.53007 * 109.46959 * 90.00457 * 11 10 8 14 14 C 1.50700 * 109.46952 * 210.00045 * 11 10 8 15 15 H 1.08000 * 120.00136 * 0.02562 * 14 11 10 16 16 C 1.37882 * 119.99896 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00292 * 359.97438 * 16 14 11 18 18 Si 1.86807 * 119.99779 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47230 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46854 * 119.99828 * 18 16 14 21 21 H 1.48501 * 109.47028 * 239.99589 * 18 16 14 22 22 C 1.34984 * 114.96402 * 0.02562 * 7 6 5 23 23 S 1.70971 * 109.19126 * 359.97438 * 22 7 6 24 24 H 1.09006 * 109.47163 * 239.99898 * 1 2 3 25 25 H 1.09005 * 109.47366 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.47540 * 119.99705 * 1 2 3 27 27 H 0.97008 * 120.00233 * 359.97438 * 4 2 1 28 28 H 1.08999 * 109.47025 * 299.99713 * 13 11 10 29 29 H 1.08998 * 109.47009 * 59.99419 * 13 11 10 30 30 H 1.09001 * 109.47117 * 179.97438 * 13 11 10 31 31 H 0.97002 * 119.99885 * 179.97438 * 17 16 14 32 32 H 1.08006 * 125.40134 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5698 -1.1671 0.0000 6 7 4.3172 -2.2245 0.0001 7 6 5.6354 -2.0020 0.0001 8 6 6.6212 -3.0929 0.0007 9 8 7.8099 -2.8379 0.0012 10 8 6.2069 -4.3759 0.0008 11 6 7.2355 -5.4006 0.0008 12 1 8.1211 -5.0267 -0.5130 13 6 7.5967 -5.7606 1.4434 14 6 6.7229 -6.6269 -0.7096 15 1 5.7241 -6.6350 -1.1204 16 6 7.5290 -7.7384 -0.8351 17 7 8.7454 -7.7284 -0.3353 18 14 6.8933 -9.2587 -1.7150 19 1 5.5048 -9.0158 -2.1824 20 1 7.7630 -9.5553 -2.8817 21 1 6.9071 -10.4132 -0.7812 22 6 5.9934 -0.7005 0.0006 23 16 4.5856 0.2697 0.0003 24 1 -0.3634 -0.5139 0.8900 25 1 -0.3634 1.0277 0.0005 26 1 -0.3634 -0.5138 -0.8900 27 1 1.6958 -2.0073 -0.0005 28 1 7.9675 -4.8737 1.9572 29 1 6.7111 -6.1345 1.9572 30 1 8.3686 -6.5303 1.4435 31 1 9.3124 -8.5106 -0.4233 32 1 7.0082 -0.3307 0.0011 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113696311.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:08 Heat of formation + Delta-G solvation = -74.971289 kcal Electronic energy + Delta-G solvation = -19354.358938 eV Core-core repulsion = 16021.382838 eV Total energy + Delta-G solvation = -3332.976100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.70640 -39.91812 -38.54297 -35.73589 -35.13734 -33.19777 -31.13520 -29.65221 -29.29521 -25.80866 -25.24640 -23.10129 -21.73767 -20.90808 -19.41793 -18.56063 -17.34985 -17.08620 -16.72051 -16.26537 -15.92027 -15.48621 -15.19873 -14.62326 -14.40064 -14.10281 -13.44191 -13.18275 -12.94768 -12.82373 -12.17699 -12.09426 -11.82914 -11.32139 -11.13276 -11.04481 -10.80353 -10.50297 -10.32126 -10.26194 -9.96752 -9.79649 -9.50919 -9.43580 -8.85969 -8.47769 -8.39958 -6.15241 -4.21316 0.51317 0.91082 1.65391 1.67169 2.30625 2.38758 3.25963 3.32307 3.37844 3.65203 3.71420 4.15763 4.34942 4.60078 4.73596 4.82753 5.17909 5.21325 5.32522 5.43660 5.71623 6.02606 6.52698 6.66578 6.92919 6.94162 7.15193 7.37782 7.49829 7.63175 7.74955 7.94609 8.16937 8.64490 8.91878 9.43595 10.92510 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.003840 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.556141 B = 7289.868602 C = 8122.569622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.512 3.488 3 O -0.513 6.513 4 N -0.620 5.620 5 C 0.242 3.758 6 N -0.448 5.448 7 C 0.059 3.941 8 C 0.530 3.470 9 O -0.512 6.512 10 O -0.332 6.332 11 C 0.212 3.788 12 H 0.048 0.952 13 C -0.155 4.155 14 C -0.517 4.517 15 H 0.070 0.930 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.912 3.088 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.281 1.281 22 C -0.261 4.261 23 S 0.264 5.736 24 H 0.098 0.902 25 H 0.103 0.897 26 H 0.098 0.902 27 H 0.428 0.572 28 H 0.016 0.984 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.265 0.735 32 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.882 15.632 1.358 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.299 3.701 3 O -0.388 6.388 4 N -0.272 5.272 5 C -0.128 4.128 6 N -0.170 5.170 7 C -0.074 4.074 8 C 0.371 3.629 9 O -0.402 6.402 10 O -0.247 6.247 11 C 0.160 3.840 12 H 0.065 0.935 13 C -0.212 4.212 14 C -0.555 4.555 15 H 0.088 0.912 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.739 3.261 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.207 1.207 22 C -0.403 4.403 23 S 0.516 5.484 24 H 0.117 0.883 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.268 0.732 28 H 0.035 0.965 29 H 0.056 0.944 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.452 16.823 1.376 22.884 hybrid contribution 0.344 -2.179 -0.380 2.238 sum -15.107 14.644 0.996 21.064 Atomic orbital electron populations 1.21888 0.88619 1.06638 1.05392 1.21322 0.91680 0.82099 0.74988 1.90680 1.69669 1.30688 1.47771 1.42849 1.01593 1.11602 1.71109 1.24366 0.89949 0.93446 1.05003 1.67157 1.03254 1.28535 1.18064 1.19159 0.88210 0.92019 1.08047 1.19823 0.85796 0.83850 0.73440 1.90821 1.17086 1.85180 1.47113 1.86681 1.43418 1.13751 1.80805 1.20730 0.85807 0.82640 0.94866 0.93467 1.22164 1.01963 1.00607 0.96492 1.21068 1.01546 0.96733 1.36173 0.91164 1.24890 0.94725 0.98781 0.95640 1.69911 1.07676 1.30250 1.44981 0.86212 0.79039 0.81708 0.79127 1.19471 1.20772 1.20722 1.26954 1.07935 0.97426 1.08029 1.84706 0.91087 1.05764 1.66885 0.88335 0.87864 0.88317 0.73247 0.96498 0.94361 0.88154 0.92484 0.79068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.53 10.32 36.01 0.37 -0.16 16 2 C 0.51 4.19 7.90 -10.99 -0.09 4.10 16 3 O -0.51 -5.92 14.59 5.56 0.08 -5.84 16 4 N -0.62 -5.86 5.40 -11.92 -0.06 -5.92 16 5 C 0.24 3.34 8.36 -87.56 -0.73 2.60 16 6 N -0.45 -7.87 10.61 -10.54 -0.11 -7.99 16 7 C 0.06 1.12 6.66 -84.65 -0.56 0.55 16 8 C 0.53 12.35 7.91 34.30 0.27 12.62 16 9 O -0.51 -12.69 15.91 -19.32 -0.31 -13.00 16 10 O -0.33 -8.60 9.78 -40.82 -0.40 -9.00 16 11 C 0.21 5.94 2.56 -27.88 -0.07 5.87 16 12 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 13 C -0.15 -4.07 9.33 37.16 0.35 -3.72 16 14 C -0.52 -14.99 8.90 -34.44 -0.31 -15.30 16 15 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 16 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 18 Si 0.91 21.44 29.54 -169.99 -5.02 16.42 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 C -0.26 -3.98 10.55 29.58 0.31 -3.67 16 23 S 0.26 3.34 20.29 -107.50 -2.18 1.16 16 24 H 0.10 0.15 8.14 -51.93 -0.42 -0.28 16 25 H 0.10 0.31 8.12 -51.93 -0.42 -0.11 16 26 H 0.10 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.43 2.94 8.82 -40.82 -0.36 2.58 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.10 2.78 6.07 -51.93 -0.32 2.46 16 31 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 32 H 0.19 2.62 7.99 -52.48 -0.42 2.20 16 LS Contribution 303.40 15.07 4.57 4.57 Total: -1.00 -35.13 303.40 -6.48 -41.61 By element: Atomic # 1 Polarization: 1.67 SS G_CDS: -3.12 Total: -1.46 kcal Atomic # 6 Polarization: 5.08 SS G_CDS: -0.55 Total: 4.53 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.45 Total: -39.00 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.63 Total: -27.84 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: 3.34 SS G_CDS: -2.18 Total: 1.16 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.13 -6.48 -41.61 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113696311.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.360 kcal (2) G-P(sol) polarization free energy of solvation -35.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds