Wall clock time and date at job start Tue Mar 31 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76197 * 103.00374 * 2 1 4 4 C 1.39459 * 120.42667 * 179.97438 * 3 2 1 5 5 C 1.38283 * 118.43055 * 180.02562 * 4 3 2 6 6 C 1.39036 * 119.18510 * 0.02562 * 5 4 3 7 7 N 1.39626 * 119.61274 * 179.97438 * 6 5 4 8 8 C 1.34771 * 120.00545 * 174.90938 * 7 6 5 9 9 O 1.21289 * 119.99600 * 5.09440 * 8 7 6 10 10 C 1.50693 * 120.00432 * 185.08856 * 8 7 6 11 11 S 1.81010 * 109.47274 * 180.02562 * 10 8 7 12 12 C 1.76197 * 99.99885 * 180.02562 * 11 10 8 13 13 H 1.08002 * 120.00278 * 0.02562 * 12 11 10 14 14 C 1.38800 * 119.99792 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99993 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99907 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47367 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46804 * 120.00787 * 16 14 12 19 19 H 1.48499 * 109.47185 * 240.00115 * 16 14 12 20 20 N 1.32308 * 120.77842 * 359.97438 * 6 5 4 21 21 C 1.31913 * 121.71662 * 0.02562 * 20 6 5 22 22 H 1.09006 * 109.47159 * 300.00050 * 1 2 3 23 23 H 1.09004 * 109.46948 * 59.99646 * 1 2 3 24 24 H 1.08997 * 109.47343 * 179.97438 * 1 2 3 25 25 H 1.07998 * 120.78217 * 0.02562 * 4 3 2 26 26 H 1.07996 * 120.41001 * 179.72460 * 5 4 3 27 27 H 0.97000 * 119.99769 * 354.91862 * 7 6 5 28 28 H 1.08995 * 109.47710 * 300.00130 * 10 8 7 29 29 H 1.09000 * 109.47030 * 60.00855 * 10 8 7 30 30 H 0.97002 * 119.99675 * 179.97438 * 15 14 12 31 31 H 1.08001 * 119.62735 * 180.02562 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5410 2.1344 0.0005 5 6 3.8051 3.4917 0.0011 6 6 2.7430 4.3890 0.0016 7 7 2.9994 5.7615 0.0026 8 6 1.9804 6.6376 -0.1004 9 8 0.8352 6.2382 -0.1010 10 6 2.2639 8.1132 -0.2148 11 16 0.7021 9.0201 -0.3357 12 6 1.3138 10.6681 -0.4556 13 1 2.3780 10.8516 -0.4405 14 6 0.4279 11.7305 -0.5705 15 7 -0.8691 11.5068 -0.5893 16 14 1.0763 13.4777 -0.6969 17 1 2.5605 13.4595 -0.6519 18 1 0.6277 14.0807 -1.9776 19 1 0.5561 14.2821 0.4379 20 7 1.4922 3.9576 0.0011 21 6 1.2025 2.6707 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 4.3462 1.4146 0.0005 26 1 4.8237 3.8505 0.0060 27 1 3.9110 6.0846 0.0774 28 1 2.8104 8.4476 0.6670 29 1 2.8628 8.3001 -1.1061 30 1 -1.4882 12.2493 -0.6693 31 1 0.1694 2.3560 -0.0003 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116237116.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:19 Heat of formation + Delta-G solvation = 13.673884 kcal Electronic energy + Delta-G solvation = -16607.651326 eV Core-core repulsion = 13721.272040 eV Total energy + Delta-G solvation = -2886.379286 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.039 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.69781 -38.71966 -34.77033 -32.62886 -32.45927 -31.04299 -29.44102 -28.52342 -25.53490 -24.03113 -23.45201 -20.49679 -18.41833 -17.84454 -17.59604 -16.75100 -15.63803 -15.37222 -15.21892 -14.83389 -14.78503 -14.28817 -14.15361 -13.71682 -13.57738 -13.29698 -12.99710 -12.62759 -12.24463 -12.21712 -11.10464 -11.05808 -11.03295 -10.96741 -10.79559 -10.10624 -9.92467 -9.84971 -9.10962 -9.06201 -8.93962 -8.28410 -7.45124 -6.54406 -6.24825 -3.96031 0.83149 1.12295 1.25587 2.11613 2.76526 2.95458 3.19878 3.23087 3.29104 3.51150 3.75138 4.16374 4.29069 4.61033 4.73639 4.77997 4.79002 4.80560 5.10019 5.10620 5.35654 5.41539 5.52118 5.67144 5.72229 5.79525 6.03975 6.07137 6.65403 7.18598 7.56967 7.98776 8.32206 8.49822 9.20603 10.82630 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.050259 B = 0.002926 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.982171 B = 9565.917938 C =10095.899885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 S -0.114 6.114 3 C -0.183 4.183 4 C -0.026 4.026 5 C -0.195 4.195 6 C 0.369 3.631 7 N -0.665 5.665 8 C 0.518 3.482 9 O -0.446 6.446 10 C -0.153 4.153 11 S -0.057 6.057 12 C -0.536 4.536 13 H 0.074 0.926 14 C 0.073 3.927 15 N -0.867 5.867 16 Si 0.920 3.080 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.458 5.458 21 C 0.131 3.869 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.141 0.859 26 H 0.142 0.858 27 H 0.416 0.584 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.268 0.732 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.739 -20.697 1.401 22.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 S 0.125 5.875 3 C -0.299 4.299 4 C -0.057 4.057 5 C -0.220 4.220 6 C 0.135 3.865 7 N -0.313 5.313 8 C 0.303 3.697 9 O -0.312 6.312 10 C -0.303 4.303 11 S 0.170 5.830 12 C -0.684 4.684 13 H 0.092 0.908 14 C -0.136 4.136 15 N -0.502 5.502 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.205 1.205 20 N -0.173 5.173 21 C -0.034 4.034 22 H 0.105 0.895 23 H 0.105 0.895 24 H 0.127 0.873 25 H 0.159 0.841 26 H 0.159 0.841 27 H 0.253 0.747 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.078 0.922 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 7.565 -21.545 1.370 22.876 hybrid contribution 2.054 2.287 -0.052 3.074 sum 9.619 -19.258 1.318 21.567 Atomic orbital electron populations 1.23691 0.94413 1.07264 1.06119 1.85252 1.06841 1.02174 1.93248 1.22611 0.97744 0.98066 1.11482 1.20888 0.94664 0.95088 0.95097 1.21403 0.99317 0.92845 1.08467 1.18624 0.89546 0.85057 0.93282 1.43938 1.11873 1.02657 1.72821 1.20646 0.84958 0.87823 0.76244 1.90815 1.19918 1.78718 1.41791 1.23559 1.08478 0.93122 1.05180 1.85461 1.00849 1.00758 1.95936 1.22896 0.95439 0.91551 1.58518 0.90784 1.25005 0.94594 0.99508 0.94516 1.70027 1.01296 1.32281 1.46591 0.86096 0.78925 0.82403 0.77948 1.19603 1.20549 1.20540 1.67700 1.19361 1.16124 1.14066 1.22790 0.98760 0.86928 0.94883 0.89470 0.89457 0.87272 0.84123 0.84055 0.74704 0.88884 0.88840 0.92182 0.82604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.16 101.05 0.93 -0.04 16 2 S -0.11 -1.03 22.58 -107.50 -2.43 -3.46 16 3 C -0.18 -2.05 6.13 -38.93 -0.24 -2.29 16 4 C -0.03 -0.26 9.93 -39.11 -0.39 -0.65 16 5 C -0.20 -2.03 9.93 -39.27 -0.39 -2.42 16 6 C 0.37 5.30 7.43 -154.52 -1.15 4.15 16 7 N -0.67 -9.33 5.40 -11.38 -0.06 -9.39 16 8 C 0.52 9.82 7.81 -10.99 -0.09 9.73 16 9 O -0.45 -10.38 14.13 5.55 0.08 -10.30 16 10 C -0.15 -3.00 6.16 36.00 0.22 -2.78 16 11 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 12 C -0.54 -15.09 9.50 30.94 0.29 -14.79 16 13 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 14 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 15 N -0.87 -26.01 13.22 55.49 0.73 -25.28 16 16 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 N -0.46 -7.71 7.88 -12.15 -0.10 -7.80 16 21 C 0.13 1.75 10.53 -17.32 -0.18 1.57 16 22 H 0.09 0.56 7.76 -51.92 -0.40 0.16 16 23 H 0.09 0.57 7.76 -51.92 -0.40 0.16 16 24 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 26 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 27 H 0.42 3.98 8.70 -40.82 -0.36 3.62 16 28 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 29 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 30 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 31 H 0.16 1.79 5.89 -52.49 -0.31 1.48 16 LS Contribution 303.49 15.07 4.57 4.57 Total: -1.00 -35.81 303.49 -8.65 -44.46 By element: Atomic # 1 Polarization: 3.40 SS G_CDS: -3.13 Total: 0.27 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.09 Total: -5.56 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: 0.58 Total: -42.47 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -2.55 SS G_CDS: -4.64 Total: -7.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.81 -8.65 -44.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116237116.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.133 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds