Wall clock time and date at job start Tue Mar 31 2020 05:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46893 * 110.99957 * 2 1 4 4 C 1.50706 * 109.47428 * 66.04429 * 3 2 1 5 5 H 1.08002 * 119.99498 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00115 * 179.97438 * 4 3 2 7 7 N 1.31508 * 120.00322 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99703 * 179.97438 * 6 4 3 9 9 H 1.48507 * 109.47079 * 90.00208 * 8 6 4 10 10 H 1.48500 * 109.47250 * 209.99987 * 8 6 4 11 11 H 1.48499 * 109.47310 * 330.00206 * 8 6 4 12 12 C 1.46903 * 110.99912 * 236.04316 * 2 1 3 13 13 C 1.50690 * 109.47301 * 293.95403 * 12 2 1 14 14 C 1.38233 * 119.60853 * 95.00118 * 13 12 2 15 15 C 1.38613 * 119.17625 * 179.97438 * 14 13 12 16 16 C 1.38752 * 118.40879 * 0.25567 * 15 14 13 17 17 Br 1.89107 * 120.42763 * 179.75035 * 16 15 14 18 18 C 1.38281 * 119.14439 * 359.51903 * 16 15 14 19 19 N 1.31858 * 119.60924 * 275.02542 * 13 12 2 20 20 H 1.08997 * 109.47005 * 183.95223 * 1 2 3 21 21 H 1.09000 * 109.47273 * 303.95367 * 1 2 3 22 22 H 1.09005 * 109.47047 * 63.95569 * 1 2 3 23 23 H 1.08998 * 109.47552 * 186.04097 * 3 2 1 24 24 H 1.09005 * 109.47249 * 306.04964 * 3 2 1 25 25 H 0.96998 * 120.00551 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.46417 * 173.95274 * 12 2 1 27 27 H 1.08995 * 109.46546 * 53.95880 * 12 2 1 28 28 H 1.08002 * 120.41515 * 0.02562 * 14 13 12 29 29 H 1.08002 * 120.79267 * 179.97438 * 15 14 13 30 30 H 1.08007 * 119.62545 * 180.20793 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2985 5 1 1.0739 1.5115 2.0484 6 6 2.0277 3.3492 1.5289 7 7 2.7128 4.0016 0.6154 8 14 1.5826 4.1870 3.1380 9 1 2.6586 3.9499 4.1337 10 1 1.4312 5.6467 2.9109 11 1 0.3042 3.6303 3.6489 12 6 1.9955 -0.7661 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 0.5017 -2.7176 -1.5850 15 6 0.1807 -4.0568 -1.4279 16 6 1.0151 -4.8491 -0.6524 17 35 0.6275 -6.6819 -0.3942 18 6 2.1363 -4.2822 -0.0748 19 7 2.4097 -3.0036 -0.2460 20 1 -0.3633 -1.0252 0.0708 21 1 -0.3634 0.5740 0.8524 22 1 -0.3633 0.4512 -0.9234 23 1 3.0797 1.3444 -0.1081 24 1 1.5610 1.9273 -0.8309 25 1 2.9880 4.9174 0.7776 26 1 3.0798 -0.6611 -1.1755 27 1 1.5611 -0.3872 -2.0627 28 1 -0.1270 -2.0707 -2.1790 29 1 -0.7003 -4.4726 -1.8942 30 1 2.7930 -4.8926 0.5276 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133136234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:26 Heat of formation + Delta-G solvation = 41.981332 kcal Electronic energy + Delta-G solvation = -14360.888824 eV Core-core repulsion = 11816.512778 eV Total energy + Delta-G solvation = -2544.376046 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.30910 -36.60064 -33.30295 -32.63986 -31.90711 -30.06793 -27.27155 -26.76862 -24.25481 -23.54246 -21.82934 -20.30533 -16.92376 -16.53988 -16.19748 -15.38266 -15.09057 -14.48021 -14.04827 -13.68563 -13.55472 -13.29051 -12.62220 -11.97764 -11.80630 -11.47761 -11.42598 -11.03717 -10.93476 -10.68788 -10.58763 -10.51450 -9.93188 -9.82470 -9.43922 -9.23109 -8.83925 -8.44249 -7.32381 -6.03895 -4.05123 0.83609 1.14974 1.39108 3.32640 3.38419 3.41831 3.62991 4.32366 4.43117 4.61306 4.67853 4.86637 5.12942 5.25452 5.32697 5.54572 5.66095 5.84193 5.97586 6.04755 6.12379 6.26089 6.50320 6.68096 7.22758 7.27000 7.76011 7.96029 8.04633 8.13128 8.49010 9.01859 9.58989 11.07063 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.046021 B = 0.003367 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.275456 B = 8314.367013 C = 8508.821632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.530 5.530 3 C 0.194 3.806 4 C -0.507 4.507 5 H 0.063 0.937 6 C 0.056 3.944 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.095 3.905 13 C 0.172 3.828 14 C -0.164 4.164 15 C -0.048 4.048 16 C -0.159 4.159 17 Br -0.047 7.047 18 C 0.135 3.865 19 N -0.455 5.455 20 H 0.042 0.958 21 H 0.077 0.923 22 H 0.014 0.986 23 H 0.033 0.967 24 H -0.007 1.007 25 H 0.262 0.738 26 H 0.091 0.909 27 H 0.044 0.956 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.402 -20.775 -5.798 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.254 5.254 3 C 0.069 3.931 4 C -0.546 4.546 5 H 0.082 0.918 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.033 4.033 13 C 0.034 3.966 14 C -0.185 4.185 15 C -0.075 4.075 16 C -0.240 4.240 17 Br 0.037 6.963 18 C -0.024 4.024 19 N -0.164 5.164 20 H 0.061 0.939 21 H 0.096 0.904 22 H 0.032 0.968 23 H 0.051 0.949 24 H 0.011 0.989 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.159 0.841 29 H 0.159 0.841 30 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.550 -21.114 -4.912 22.150 hybrid contribution -1.184 0.923 -0.342 1.540 sum -5.735 -20.190 -5.255 21.637 Atomic orbital electron populations 1.22306 0.88877 0.99490 1.00859 1.62106 1.06912 1.17965 1.38457 1.19777 0.95627 0.80796 0.96876 1.21136 1.34924 0.96884 1.01632 0.91845 1.24973 0.95267 0.97295 0.97005 1.69949 1.38339 1.11531 1.34020 0.86485 0.78891 0.78368 0.83589 1.20568 1.21316 1.19879 1.21041 1.01950 0.86625 0.93724 1.21616 0.89436 0.96580 0.88984 1.22099 0.98662 0.95342 1.02433 1.21489 0.97969 0.93248 0.94803 1.22898 1.01645 0.92447 1.07043 1.96694 1.94825 1.08221 1.96559 1.22891 0.93088 0.91380 0.95068 1.67750 1.30975 1.03619 1.14031 0.93888 0.90406 0.96797 0.94873 0.98877 0.92884 0.89083 0.93770 0.84088 0.84132 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.02 60.07 0.54 1.18 16 2 N -0.53 -11.43 4.74 -245.83 -1.17 -12.60 16 3 C 0.19 5.00 4.72 -4.98 -0.02 4.98 16 4 C -0.51 -14.23 8.46 -34.44 -0.29 -14.52 16 5 H 0.06 1.78 7.12 -52.49 -0.37 1.40 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.55 13.29 55.43 0.74 -25.82 16 8 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 12 C 0.10 1.70 5.29 -4.98 -0.03 1.68 16 13 C 0.17 2.73 5.64 -82.59 -0.47 2.27 16 14 C -0.16 -2.10 8.36 -39.44 -0.33 -2.43 16 15 C -0.05 -0.54 9.94 -39.25 -0.39 -0.93 16 16 C -0.16 -1.89 6.25 -39.38 -0.25 -2.14 16 17 Br -0.05 -0.47 33.74 -68.01 -2.29 -2.76 16 18 C 0.14 1.82 10.95 -17.52 -0.19 1.63 16 19 N -0.45 -7.49 10.27 -9.45 -0.10 -7.58 16 20 H 0.04 0.73 6.40 -51.93 -0.33 0.39 16 21 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 22 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 23 H 0.03 0.91 7.93 -51.93 -0.41 0.50 16 24 H -0.01 -0.18 8.12 -51.93 -0.42 -0.60 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H 0.09 1.68 7.93 -51.93 -0.41 1.27 16 27 H 0.04 0.72 8.02 -51.93 -0.42 0.30 16 28 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 29 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.16 1.80 8.06 -52.48 -0.42 1.37 16 LS Contribution 279.89 15.07 4.22 4.22 Total: -1.00 -30.21 279.89 -8.69 -38.90 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -3.55 Total: -4.18 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -1.52 Total: -6.80 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -0.53 Total: -46.00 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.76 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.21 -8.69 -38.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133136234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.885 kcal (2) G-P(sol) polarization free energy of solvation -30.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds