Wall clock time and date at job start Tue Mar 31 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48509 * 109.47142 * 239.99934 * 3 2 1 5 5 H 1.48500 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47354 * 119.99899 * 3 2 1 7 7 C 1.37878 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99804 * 180.02562 * 7 2 1 9 9 C 1.50690 * 119.99972 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00058 * 180.02562 * 10 9 7 12 12 O 1.21548 * 120.00126 * 359.97438 * 11 10 9 13 13 C 1.47851 * 119.99694 * 180.02562 * 11 10 9 14 14 C 1.39597 * 120.14367 * 0.22467 * 13 11 10 15 15 C 1.37934 * 119.88332 * 180.27732 * 14 13 11 16 16 C 1.38363 * 120.15836 * 359.49073 * 15 14 13 17 17 N 1.48012 * 119.85932 * 180.23387 * 16 15 14 18 18 O 1.21797 * 120.00287 * 0.02562 * 17 16 15 19 19 O 1.21801 * 119.99841 * 180.02562 * 17 16 15 20 20 C 1.38445 * 120.27947 * 0.26009 * 16 15 14 21 21 Cl 1.73603 * 119.94164 * 180.02562 * 20 16 15 22 22 C 1.38099 * 120.11992 * 359.97438 * 20 16 15 23 23 H 0.97008 * 119.99767 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47007 * 60.00196 * 9 7 2 25 25 H 1.08996 * 109.47900 * 300.00414 * 9 7 2 26 26 H 0.96997 * 119.99607 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.05332 * 0.02562 * 14 13 11 28 28 H 1.08002 * 119.92366 * 179.77518 * 15 14 13 29 29 H 1.08004 * 120.08406 * 179.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2030 -3.6126 0.0027 11 6 1.7538 -4.8833 0.0033 12 8 0.5587 -5.1054 0.0035 13 6 2.7146 -6.0070 0.0049 14 6 4.0877 -5.7554 0.0105 15 6 4.9793 -6.8078 0.0061 16 6 4.5158 -8.1115 0.0069 17 7 5.4785 -9.2358 0.0075 18 8 6.6758 -9.0124 0.0077 19 8 5.0733 -10.3844 0.0077 20 6 3.1555 -8.3687 0.0066 21 17 2.5836 -10.0079 0.0082 22 6 2.2526 -7.3238 0.0060 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 3.1567 -3.4354 0.0022 27 1 4.4511 -4.7384 0.0141 28 1 6.0417 -6.6138 0.0068 29 1 1.1915 -7.5252 0.0054 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168614651.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:56 Heat of formation + Delta-G solvation = -14.930087 kcal Electronic energy + Delta-G solvation = -18856.204664 eV Core-core repulsion = 15387.955345 eV Total energy + Delta-G solvation = -3468.249319 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.40603 -40.35759 -38.49970 -37.09508 -36.64330 -34.65074 -32.86344 -32.25872 -31.50481 -28.05875 -26.66231 -23.82700 -23.50344 -22.46562 -20.44985 -19.70285 -18.85128 -18.36748 -17.78330 -16.36031 -16.27976 -15.71136 -15.13375 -14.98058 -14.69862 -14.58765 -13.93334 -13.88464 -13.11118 -12.38441 -12.27175 -12.25855 -12.00582 -11.93019 -11.60244 -11.29293 -11.16593 -11.01013 -10.69360 -10.49185 -9.97083 -9.71213 -9.59483 -9.55695 -8.94601 -8.23372 -6.32720 -4.41526 -0.67903 0.39714 0.88784 1.00106 1.45186 2.43284 3.15108 3.20110 3.21746 3.42764 3.46033 3.79538 4.17825 4.22122 4.34480 4.46361 4.65013 5.02706 5.03951 5.19279 5.35634 5.57140 5.74651 6.10299 6.98564 7.01679 7.26018 7.41296 7.42093 7.75658 8.21445 8.44617 8.69724 9.25434 10.77079 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.032911 B = 0.003421 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.587649 B = 8182.341928 C = 9017.784334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.066 3.934 3 Si 0.906 3.094 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.248 3.752 10 N -0.693 5.693 11 C 0.533 3.467 12 O -0.533 6.533 13 C -0.052 4.052 14 C -0.088 4.088 15 C -0.046 4.046 16 C -0.034 4.034 17 N 0.028 4.972 18 O -0.163 6.163 19 O -0.137 6.137 20 C 0.009 3.991 21 Cl -0.004 7.004 22 C -0.062 4.062 23 H 0.269 0.731 24 H 0.034 0.966 25 H 0.034 0.966 26 H 0.392 0.608 27 H 0.161 0.839 28 H 0.167 0.833 29 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.112 -14.152 0.020 16.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.082 0.918 9 C 0.128 3.872 10 N -0.341 5.341 11 C 0.316 3.684 12 O -0.412 6.412 13 C -0.056 4.056 14 C -0.108 4.108 15 C -0.066 4.066 16 C -0.118 4.118 17 N 0.548 4.452 18 O -0.376 6.376 19 O -0.357 6.357 20 C -0.020 4.020 21 Cl 0.026 6.974 22 C -0.082 4.082 23 H 0.078 0.922 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.227 0.773 27 H 0.178 0.822 28 H 0.185 0.815 29 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.562 -13.704 0.021 15.652 hybrid contribution 1.093 0.608 -0.002 1.251 sum 8.656 -13.096 0.019 15.698 Atomic orbital electron populations 1.69952 1.06136 1.27741 1.48083 1.24947 0.94958 0.99564 0.94395 0.86434 0.79425 0.82073 0.78771 1.19978 1.20949 1.19974 1.21113 0.93246 0.90199 1.54319 0.91796 1.19283 0.88130 0.81460 0.98356 1.46516 1.11699 1.05718 1.70172 1.17960 0.87735 0.83144 0.79554 1.90802 1.15535 1.84506 1.50384 1.20841 0.94389 0.94702 0.95682 1.21583 0.91454 1.00282 0.97438 1.21004 1.02855 0.88397 0.94294 1.21027 0.87838 0.87933 1.15034 1.43427 1.01591 1.02100 0.98096 1.94544 0.98168 1.91045 1.53795 1.94622 1.83425 1.05545 1.52130 1.20668 0.90727 0.89955 1.00611 1.98471 1.88508 1.14724 1.95711 1.21320 1.01295 0.89129 0.96467 0.92160 0.94840 0.94849 0.77336 0.82202 0.81528 0.81253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.51 13.29 55.43 0.74 -23.78 15 2 C 0.07 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.91 19.62 29.54 -169.99 -5.02 14.60 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 15 6 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 7 C -0.55 -13.71 9.28 -34.45 -0.32 -14.03 15 8 H 0.06 1.46 7.60 -52.48 -0.40 1.06 15 9 C 0.25 5.93 5.43 -5.20 -0.03 5.90 15 10 N -0.69 -12.58 5.50 -62.43 -0.34 -12.92 15 11 C 0.53 9.22 7.77 -12.33 -0.10 9.12 15 12 O -0.53 -11.31 16.35 5.32 0.09 -11.22 15 13 C -0.05 -0.66 5.87 -104.97 -0.62 -1.28 15 14 C -0.09 -0.85 9.54 -39.19 -0.37 -1.23 15 15 C -0.05 -0.43 9.54 -39.65 -0.38 -0.81 15 16 C -0.03 -0.39 6.86 -79.83 -0.55 -0.94 15 17 N 0.03 0.35 4.45 34.02 0.15 0.50 15 18 O -0.16 -2.11 18.43 -29.46 -0.54 -2.65 15 19 O -0.14 -1.86 15.99 -29.46 -0.47 -2.33 15 20 C 0.01 0.10 6.31 -39.56 -0.25 -0.15 15 21 Cl 0.00 -0.04 25.91 -51.86 -1.34 -1.39 15 22 C -0.06 -0.74 9.38 -39.14 -0.37 -1.11 15 23 H 0.27 7.04 8.31 -40.82 -0.34 6.70 15 24 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 25 H 0.03 0.89 8.14 -51.93 -0.42 0.47 15 26 H 0.39 5.75 6.36 -40.82 -0.26 5.49 15 27 H 0.16 1.18 6.40 -52.49 -0.34 0.85 15 28 H 0.17 1.16 7.60 -52.49 -0.40 0.77 15 29 H 0.17 2.00 7.65 -52.48 -0.40 1.60 15 LS Contribution 286.41 15.07 4.32 4.32 Total: -1.00 -29.69 286.41 -7.28 -36.97 By element: Atomic # 1 Polarization: 2.56 SS G_CDS: -1.77 Total: 0.78 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -3.07 Total: -2.89 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.54 Total: -36.19 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.93 Total: -16.20 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.34 Total: -1.39 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.69 -7.28 -36.97 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168614651.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.041 kcal (2) G-P(sol) polarization free energy of solvation -29.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds