Wall clock time and date at job start Tue Mar 31 2020 05:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00011 * 2 1 4 4 H 1.48509 * 109.47142 * 239.99934 * 3 2 1 5 5 H 1.48500 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47354 * 119.99899 * 3 2 1 7 7 C 1.37878 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99804 * 180.02562 * 7 2 1 9 9 C 1.50690 * 119.99972 * 359.97438 * 7 2 1 10 10 N 1.46503 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00058 * 180.02562 * 10 9 7 12 12 O 1.21548 * 120.00126 * 359.97438 * 11 10 9 13 13 C 1.47851 * 119.99694 * 180.02562 * 11 10 9 14 14 C 1.39597 * 120.14367 * 0.22467 * 13 11 10 15 15 C 1.37934 * 119.88332 * 180.27732 * 14 13 11 16 16 C 1.38363 * 120.15836 * 359.49073 * 15 14 13 17 17 N 1.48012 * 119.85932 * 180.23387 * 16 15 14 18 18 O 1.21797 * 120.00287 * 0.02562 * 17 16 15 19 19 O 1.21801 * 119.99841 * 180.02562 * 17 16 15 20 20 C 1.38445 * 120.27947 * 0.26009 * 16 15 14 21 21 Cl 1.73603 * 119.94164 * 180.02562 * 20 16 15 22 22 C 1.38099 * 120.11992 * 359.97438 * 20 16 15 23 23 H 0.97008 * 119.99767 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47007 * 60.00196 * 9 7 2 25 25 H 1.08996 * 109.47900 * 300.00414 * 9 7 2 26 26 H 0.96997 * 119.99607 * 359.97438 * 10 9 7 27 27 H 1.07997 * 120.05332 * 0.02562 * 14 13 11 28 28 H 1.08002 * 119.92366 * 179.77518 * 15 14 13 29 29 H 1.08004 * 120.08406 * 179.97438 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 7 2.2030 -3.6126 0.0027 11 6 1.7538 -4.8833 0.0033 12 8 0.5587 -5.1054 0.0035 13 6 2.7146 -6.0070 0.0049 14 6 4.0877 -5.7554 0.0105 15 6 4.9793 -6.8078 0.0061 16 6 4.5158 -8.1115 0.0069 17 7 5.4785 -9.2358 0.0075 18 8 6.6758 -9.0124 0.0077 19 8 5.0733 -10.3844 0.0077 20 6 3.1555 -8.3687 0.0066 21 17 2.5836 -10.0079 0.0082 22 6 2.2526 -7.3238 0.0060 23 1 -0.4850 0.8401 -0.0004 24 1 0.6241 -2.5574 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 3.1567 -3.4354 0.0022 27 1 4.4511 -4.7384 0.0141 28 1 6.0417 -6.6138 0.0068 29 1 1.1915 -7.5252 0.0054 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168614651.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:56 Heat of formation + Delta-G solvation = -33.443502 kcal Electronic energy + Delta-G solvation = -18857.007466 eV Core-core repulsion = 15387.955345 eV Total energy + Delta-G solvation = -3469.052121 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -43.37299 -41.51541 -39.75705 -38.02353 -37.60938 -36.35872 -34.56075 -33.40465 -32.45931 -29.67308 -27.94310 -25.26250 -24.40683 -23.90228 -21.85796 -20.63618 -19.82935 -19.77845 -18.74595 -18.04556 -17.52190 -16.84382 -16.51013 -16.42539 -16.13984 -15.55538 -15.02257 -14.99851 -14.51396 -14.06814 -14.01879 -13.32362 -12.98590 -12.95166 -12.94461 -12.67937 -12.59391 -12.29311 -12.25331 -11.64981 -11.53276 -11.20141 -10.97828 -10.80915 -10.41339 -9.98375 -8.29403 -6.45773 -1.65812 -0.45452 -0.12158 0.06345 0.55653 1.36441 1.46195 1.48839 1.56906 2.06184 2.24329 2.41380 2.92139 3.06743 3.34482 3.36058 3.52448 3.59811 4.22151 4.28184 4.40958 4.70129 4.85095 5.07451 5.14989 5.20947 5.34456 5.58765 5.81116 6.40814 6.59231 6.68037 7.13297 7.30028 8.82010 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.032911 B = 0.003421 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.587649 B = 8182.341928 C = 9017.784334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.290 1.290 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.090 0.910 9 C 0.263 3.737 10 N -0.687 5.687 11 C 0.537 3.463 12 O -0.580 6.580 13 C -0.062 4.062 14 C -0.066 4.066 15 C -0.028 4.028 16 C -0.036 4.036 17 N 0.027 4.973 18 O -0.152 6.152 19 O -0.163 6.163 20 C 0.004 3.996 21 Cl -0.004 7.004 22 C -0.061 4.061 23 H 0.268 0.732 24 H -0.003 1.003 25 H -0.003 1.003 26 H 0.413 0.587 27 H 0.190 0.810 28 H 0.201 0.799 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.282 -13.609 0.023 18.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.805 3.195 4 H -0.186 1.186 5 H -0.216 1.216 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.108 0.892 9 C 0.141 3.859 10 N -0.337 5.337 11 C 0.323 3.677 12 O -0.461 6.461 13 C -0.066 4.066 14 C -0.085 4.085 15 C -0.047 4.047 16 C -0.120 4.120 17 N 0.545 4.455 18 O -0.369 6.369 19 O -0.377 6.377 20 C -0.024 4.024 21 Cl 0.026 6.974 22 C -0.081 4.081 23 H 0.077 0.923 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.251 0.749 27 H 0.208 0.792 28 H 0.218 0.782 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 10.756 -13.233 0.024 17.053 hybrid contribution 0.142 0.364 -0.003 0.390 sum 10.899 -12.869 0.021 16.864 Atomic orbital electron populations 1.70118 1.08209 1.28639 1.49754 1.26010 0.95717 1.03792 0.93929 0.85250 0.77918 0.76816 0.79521 1.18637 1.21570 1.18626 1.21567 0.94529 0.90232 1.53088 0.89246 1.18701 0.88570 0.83655 0.94982 1.46120 1.11885 1.04907 1.70746 1.18506 0.87896 0.83687 0.77602 1.90780 1.18042 1.85243 1.52069 1.20335 0.94738 0.92830 0.98699 1.21821 0.89667 1.01876 0.95108 1.21347 1.04312 0.86897 0.92149 1.21243 0.87436 0.88329 1.14989 1.43586 1.01720 1.02311 0.97868 1.94527 0.98444 1.91029 1.52906 1.94638 1.83486 1.06094 1.53439 1.20601 0.90882 0.89813 1.01132 1.98473 1.88598 1.14643 1.95724 1.21217 1.01265 0.89152 0.96472 0.92283 0.98546 0.98550 0.74935 0.79245 0.78229 0.81854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.88 13.29 21.45 0.28 -52.60 15 2 C 0.01 0.29 5.46 84.65 0.46 0.75 15 3 Si 0.98 39.41 29.54 68.60 2.03 41.43 15 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 5 H -0.29 -11.81 7.11 99.48 0.71 -11.11 15 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 15 7 C -0.56 -27.36 9.28 25.60 0.24 -27.12 15 8 H 0.09 3.84 7.60 -2.91 -0.02 3.81 15 9 C 0.26 12.95 5.43 85.63 0.46 13.42 15 10 N -0.69 -24.51 5.50 -469.72 -2.58 -27.09 15 11 C 0.54 18.56 7.77 86.79 0.67 19.23 15 12 O -0.58 -25.55 16.35 -3.87 -0.06 -25.61 15 13 C -0.06 -1.48 5.87 -20.09 -0.12 -1.59 15 14 C -0.07 -1.02 9.54 22.53 0.21 -0.80 15 15 C -0.03 -0.40 9.54 22.23 0.21 -0.19 15 16 C -0.04 -0.72 6.86 36.46 0.25 -0.47 15 17 N 0.03 0.62 4.45 -46.28 -0.21 0.41 15 18 O -0.15 -3.48 18.43 18.89 0.35 -3.13 15 19 O -0.16 -4.18 15.99 18.88 0.30 -3.88 15 20 C 0.00 0.09 6.31 22.29 0.14 0.23 15 21 Cl 0.00 -0.09 25.91 -2.72 -0.07 -0.16 15 22 C -0.06 -1.41 9.38 22.55 0.21 -1.20 15 23 H 0.27 14.42 8.31 -92.70 -0.77 13.64 15 24 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 15 25 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 15 26 H 0.41 11.01 6.36 -92.71 -0.59 10.43 15 27 H 0.19 1.82 6.40 -2.91 -0.02 1.80 15 28 H 0.20 1.63 7.60 -2.91 -0.02 1.61 15 29 H 0.16 3.95 7.65 -2.91 -0.02 3.93 15 Total: -1.00 -66.51 286.41 3.43 -63.09 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 0.64 Total: 5.28 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 2.75 Total: 2.26 kcal Atomic # 7 Polarization: -76.77 SS G_CDS: -2.50 Total: -79.28 kcal Atomic # 8 Polarization: -33.21 SS G_CDS: 0.59 Total: -32.62 kcal Atomic # 14 Polarization: 39.41 SS G_CDS: 2.03 Total: 41.43 kcal Atomic # 17 Polarization: -0.09 SS G_CDS: -0.07 Total: -0.16 kcal Total: -66.51 3.43 -63.09 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168614651.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.644 kcal (2) G-P(sol) polarization free energy of solvation -66.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds