Wall clock time and date at job start Tue Mar 31 2020 06:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.38995 * 120.00141 * 2 1 4 4 N 1.29585 * 125.40170 * 0.02562 * 3 2 1 5 5 N 1.37760 * 115.62490 * 179.97438 * 4 3 2 6 6 C 1.29644 * 115.60704 * 0.02562 * 5 4 3 7 7 S 1.76199 * 125.41427 * 179.74217 * 6 5 4 8 8 C 1.81402 * 102.99862 * 0.02562 * 7 6 5 9 9 C 1.53006 * 109.47251 * 180.02562 * 8 7 6 10 10 H 1.09008 * 109.46677 * 54.99800 * 9 8 7 11 11 C 1.47196 * 109.47254 * 295.00517 * 9 8 7 12 12 N 8.93928 * 125.58449 * 17.70062 * 2 1 3 13 13 C 1.52997 * 109.47296 * 175.00052 * 9 8 7 14 14 C 1.50695 * 109.47084 * 185.00063 * 13 9 8 15 15 H 1.08007 * 120.00176 * 0.02562 * 14 13 9 16 16 C 1.37873 * 120.00238 * 179.97438 * 14 13 9 17 17 N 1.31519 * 119.99969 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00530 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47234 * 89.99961 * 18 16 14 20 20 H 1.48497 * 109.47416 * 210.00314 * 18 16 14 21 21 H 1.48509 * 109.47003 * 330.00124 * 18 16 14 22 22 S 1.76038 * 125.40749 * 179.97438 * 3 2 1 23 23 H 1.08994 * 109.47510 * 300.00663 * 1 2 3 24 24 H 1.09002 * 109.46852 * 60.00479 * 1 2 3 25 25 H 1.09003 * 109.46656 * 180.02562 * 1 2 3 26 26 H 0.97001 * 119.99870 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47457 * 300.00023 * 8 7 6 28 28 H 1.09002 * 109.47017 * 60.00424 * 8 7 6 29 29 H 1.08995 * 109.46811 * 305.00299 * 13 9 8 30 30 H 1.08999 * 109.46684 * 65.00256 * 13 9 8 31 31 H 0.96997 * 120.00230 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1600 1.2037 0.0000 4 7 1.6207 2.3820 0.0005 5 7 2.5021 3.4407 0.0009 6 6 3.7591 3.1233 0.0003 7 16 5.1006 4.2656 -0.0058 8 6 4.2653 5.8759 -0.0097 9 6 5.3110 6.9929 -0.0159 10 1 5.9878 6.8522 -0.8587 11 6 6.0772 6.9546 1.2403 12 7 6.6668 6.9258 2.2104 13 6 4.6103 8.3468 -0.1449 14 6 5.6430 9.4365 -0.2745 15 1 6.6941 9.1882 -0.2661 16 6 5.2461 10.7505 -0.4047 17 7 3.9662 11.0529 -0.4155 18 14 6.5262 12.1013 -0.5661 19 1 6.8429 12.3144 -2.0012 20 1 5.9940 13.3597 0.0156 21 1 7.7596 11.7037 0.1592 22 16 3.9126 1.3696 0.0006 23 1 -0.3634 0.5139 0.8898 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 1.9500 -0.8401 0.0004 27 1 3.6404 5.9589 -0.8989 28 1 3.6435 5.9648 0.8811 29 1 3.9729 8.3432 -1.0291 30 1 4.0015 8.5266 0.7412 31 1 3.6870 11.9772 -0.5075 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170695818.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:24 Heat of formation + Delta-G solvation = 82.212284 kcal Electronic energy + Delta-G solvation = -16336.449204 eV Core-core repulsion = 13485.334718 eV Total energy + Delta-G solvation = -2851.114486 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.046 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.51054 -36.83195 -36.38930 -34.03803 -32.29126 -31.06038 -27.85050 -27.32640 -24.72559 -24.06014 -21.93486 -20.92479 -19.87984 -17.38919 -17.22080 -16.76690 -16.38821 -15.59288 -15.27499 -14.71955 -14.20308 -14.06520 -13.85437 -13.44296 -13.01297 -12.82034 -12.66979 -12.22757 -12.01950 -11.59046 -11.50275 -11.24754 -11.09413 -10.87648 -10.72058 -10.50825 -10.34314 -10.16467 -9.72482 -9.60981 -9.31001 -8.89028 -8.49107 -7.71359 -6.12909 -4.17314 0.21452 0.67380 0.92037 1.27296 2.14133 2.20820 2.75326 3.28093 3.35289 3.39351 3.46648 3.55520 4.37944 4.47052 4.59278 4.72459 4.98633 5.10582 5.17174 5.25180 5.38822 5.39174 5.83701 6.16582 6.26885 6.30629 6.70002 7.36259 7.43768 7.80770 7.90175 8.15116 8.30235 8.86586 9.48571 10.97728 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.035183 B = 0.003214 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.648521 B = 8710.481710 C = 9247.802515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.694 5.694 3 C 0.310 3.690 4 N -0.352 5.352 5 N -0.257 5.257 6 C 0.027 3.973 7 S 0.002 5.998 8 C -0.092 4.092 9 C 0.024 3.976 10 H 0.114 0.886 11 C 0.234 3.766 12 N -0.455 5.455 13 C 0.038 3.962 14 C -0.530 4.530 15 H 0.059 0.941 16 C 0.064 3.936 17 N -0.889 5.889 18 Si 0.893 3.107 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.273 1.273 22 S 0.059 5.941 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.081 0.919 26 H 0.417 0.583 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.044 0.956 30 H 0.031 0.969 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.378 -23.607 -2.304 24.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.336 5.336 3 C -0.073 4.073 4 N -0.189 5.189 5 N -0.085 5.085 6 C -0.374 4.374 7 S 0.231 5.769 8 C -0.243 4.243 9 C 0.000 4.000 10 H 0.132 0.868 11 C -0.084 4.084 12 N -0.131 5.131 13 C -0.002 4.002 14 C -0.568 4.568 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.527 5.527 18 Si 0.721 3.279 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.198 1.198 22 S 0.292 5.708 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.100 0.900 26 H 0.254 0.746 27 H 0.135 0.865 28 H 0.121 0.879 29 H 0.062 0.938 30 H 0.049 0.951 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.067 -23.407 -0.843 23.623 hybrid contribution -0.794 0.666 -0.451 1.131 sum -3.861 -22.741 -1.294 23.103 Atomic orbital electron populations 1.21675 0.77348 1.02617 1.02853 1.43625 1.06600 1.02235 1.81161 1.25976 0.91866 0.91863 0.97634 1.75127 1.24075 0.93273 1.26425 1.75484 0.96822 1.20487 1.15715 1.30363 1.01190 0.98659 1.07143 1.85830 1.02734 0.97910 1.90386 1.24003 1.01450 0.90177 1.08714 1.19050 0.94204 0.97626 0.89119 0.86793 1.28944 0.93242 0.91692 0.94521 1.81008 1.10222 1.10055 1.11838 1.19234 0.95946 0.85720 0.99319 1.21087 0.92799 0.91393 1.51526 0.92307 1.24947 0.95323 0.98780 0.94813 1.69938 1.14301 1.19096 1.49371 0.86563 0.81670 0.81314 0.78381 1.20389 1.21115 1.19822 1.85521 1.03719 1.02244 1.79362 0.91910 0.91866 0.90034 0.74629 0.86457 0.87873 0.93755 0.95086 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 11.01 59.85 0.66 1.25 16 2 N -0.69 -5.07 5.89 -67.62 -0.40 -5.47 16 3 C 0.31 3.55 8.42 -87.39 -0.74 2.81 16 4 N -0.35 -5.27 11.68 30.85 0.36 -4.91 16 5 N -0.26 -4.15 11.62 31.11 0.36 -3.79 16 6 C 0.03 0.38 7.82 51.84 0.41 0.79 16 7 S 0.00 0.02 21.57 -107.50 -2.32 -2.29 16 8 C -0.09 -1.41 4.96 37.16 0.18 -1.23 16 9 C 0.02 0.43 2.22 -93.41 -0.21 0.22 16 10 H 0.11 1.84 8.14 -51.92 -0.42 1.41 16 11 C 0.23 4.68 13.31 -20.78 -0.28 4.40 16 12 N -0.45 -9.87 18.53 42.14 0.78 -9.09 16 13 C 0.04 0.85 4.42 -27.89 -0.12 0.73 16 14 C -0.53 -13.76 8.60 -34.44 -0.30 -14.06 16 15 H 0.06 1.51 7.59 -52.48 -0.40 1.11 16 16 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -25.17 13.29 55.43 0.74 -24.44 16 18 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 S 0.06 0.64 23.39 -107.50 -2.51 -1.87 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.42 1.76 8.95 -40.82 -0.37 1.40 16 27 H 0.12 1.68 8.14 -51.93 -0.42 1.26 16 28 H 0.10 1.63 8.14 -51.92 -0.42 1.21 16 29 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 313.03 15.07 4.72 4.72 Total: -1.00 -32.00 313.03 -7.06 -39.07 By element: Atomic # 1 Polarization: -1.18 SS G_CDS: -3.28 Total: -4.46 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -0.49 Total: -3.45 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 1.84 Total: -47.70 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 0.67 SS G_CDS: -4.83 Total: -4.17 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.00 -7.06 -39.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170695818.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.279 kcal (2) G-P(sol) polarization free energy of solvation -32.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds