Wall clock time and date at job start Tue Mar 31 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00207 * 2 1 4 4 H 1.48497 * 109.47102 * 269.99771 * 3 2 1 5 5 H 1.48499 * 109.47343 * 29.99743 * 3 2 1 6 6 H 1.48498 * 109.47016 * 149.99994 * 3 2 1 7 7 C 1.37880 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99618 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00238 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47361 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47387 * 179.97438 * 10 9 7 12 12 N 1.46492 * 109.47142 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00003 * 179.97438 * 12 11 10 14 14 O 1.21640 * 120.00062 * 0.02562 * 13 12 11 15 15 C 1.47190 * 120.00433 * 179.97438 * 13 12 11 16 16 C 1.36010 * 123.45579 * 0.02562 * 15 13 12 17 17 S 1.70454 * 110.81487 * 179.69575 * 16 15 13 18 18 C 1.75506 * 92.44355 * 0.26810 * 17 16 15 19 19 N 1.48036 * 124.70870 * 179.97438 * 18 17 16 20 20 O 1.21806 * 119.99514 * 180.02562 * 19 18 17 21 21 O 1.21796 * 120.00237 * 0.03445 * 19 18 17 22 22 C 1.32768 * 110.57618 * 0.02562 * 18 17 16 23 23 H 0.97003 * 119.99592 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47360 * 59.99600 * 9 7 2 25 25 H 1.09004 * 109.47092 * 299.99995 * 9 7 2 26 26 H 1.08999 * 109.47191 * 59.99520 * 10 9 7 27 27 H 1.09004 * 109.47033 * 300.00055 * 10 9 7 28 28 H 1.08999 * 109.47235 * 59.99684 * 11 10 9 29 29 H 1.09001 * 109.46692 * 300.00124 * 11 10 9 30 30 H 0.97000 * 120.00489 * 0.02562 * 12 11 10 31 31 H 1.08002 * 124.59604 * 359.96898 * 16 15 13 32 32 H 1.07999 * 123.45731 * 180.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0023 11 6 5.5514 -2.6368 0.0022 12 7 6.0396 -4.0180 0.0040 13 6 7.3647 -4.2643 0.0037 14 8 8.1552 -3.3398 0.0025 15 6 7.8554 -5.6520 0.0060 16 6 7.0355 -6.7372 0.0080 17 16 7.9416 -8.1810 0.0019 18 6 9.4665 -7.3123 0.0047 19 7 10.8013 -7.9524 0.0022 20 8 11.8066 -7.2646 0.0050 21 8 10.8943 -9.1668 -0.0028 22 6 9.2567 -6.0013 0.0106 23 1 -0.4850 0.8401 -0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8752 -0.6806 -0.8889 26 1 3.6584 -3.1511 -0.8874 27 1 3.6577 -3.1499 0.8925 28 1 5.9148 -2.1222 0.8917 29 1 5.9147 -2.1237 -0.8882 30 1 5.4093 -4.7553 0.0045 31 1 5.9565 -6.6906 0.0085 32 1 10.0523 -5.2710 0.0129 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171501400.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:59 Heat of formation + Delta-G solvation = -15.848484 kcal Electronic energy + Delta-G solvation = -18534.157263 eV Core-core repulsion = 15203.744921 eV Total energy + Delta-G solvation = -3330.412343 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.47302 -40.28243 -37.77315 -36.92047 -35.76404 -33.57241 -32.07228 -31.15021 -27.64042 -27.02273 -25.23712 -23.04600 -21.84528 -20.82711 -20.29838 -19.70571 -18.75039 -18.02220 -17.62552 -17.24836 -16.65048 -15.75688 -15.74096 -14.55861 -14.50216 -14.18014 -13.87149 -13.59285 -13.56265 -12.79516 -12.17939 -12.14743 -12.05584 -12.03277 -11.77274 -11.58225 -11.23000 -10.99532 -10.48590 -10.32217 -10.14379 -9.93792 -9.78248 -9.44326 -9.33080 -9.11849 -8.63772 -6.14543 -4.14037 -0.81979 -0.05728 0.37513 0.73054 1.10451 1.25208 2.89862 2.91872 3.24986 3.33225 3.36286 3.86887 4.19864 4.33250 4.36825 4.65816 4.80685 5.12391 5.19386 5.37985 5.47418 5.77350 5.83328 6.07225 6.27633 6.47075 6.63127 7.10416 7.13703 7.24039 7.27051 7.66530 7.93086 8.40648 8.88383 9.47383 10.98547 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.046133 B = 0.002627 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.793417 B =10657.926857 C =11238.966188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.525 4.525 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.114 4.114 11 C 0.113 3.887 12 N -0.715 5.715 13 C 0.572 3.428 14 O -0.529 6.529 15 C -0.155 4.155 16 C -0.180 4.180 17 S 0.335 5.665 18 C -0.204 4.204 19 N 0.060 4.940 20 O -0.139 6.139 21 O -0.154 6.154 22 C 0.018 3.982 23 H 0.264 0.736 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.398 0.602 31 H 0.196 0.804 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.745 -17.833 0.043 23.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.563 4.563 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.152 4.152 11 C -0.009 4.009 12 N -0.365 5.365 13 C 0.356 3.644 14 O -0.407 6.407 15 C -0.172 4.172 16 C -0.320 4.320 17 S 0.602 5.398 18 C -0.404 4.404 19 N 0.582 4.418 20 O -0.358 6.358 21 O -0.369 6.369 22 C -0.017 4.017 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.233 0.767 31 H 0.213 0.787 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 15.105 -18.292 0.041 23.723 hybrid contribution 0.577 1.998 -0.015 2.080 sum 15.682 -16.294 0.026 22.614 Atomic orbital electron populations 1.69907 1.06335 1.27064 1.50716 1.25030 0.94759 0.99282 0.94370 0.86774 0.80389 0.83491 0.78635 1.20205 1.21307 1.18891 1.21064 0.89215 0.94519 1.51460 0.91025 1.19501 0.97366 0.91239 0.96779 1.21727 0.90264 1.01369 1.01823 1.21777 0.96403 0.80203 1.02500 1.45999 1.05842 1.10602 1.74054 1.17286 0.83019 0.86624 0.77492 1.90851 1.55251 1.44935 1.49644 1.20133 0.91260 0.95149 1.10704 1.26449 1.06583 0.97752 1.01258 1.83560 0.87896 1.02648 1.65740 1.25948 0.89699 0.98188 1.26544 1.42495 1.00932 1.00798 0.97533 1.94610 1.24551 1.63579 1.53075 1.94585 1.93050 0.95311 1.53953 1.21378 0.97584 0.93766 0.88929 0.92610 0.96230 0.96656 0.92011 0.91979 0.91237 0.91237 0.76705 0.78662 0.80046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.96 55.43 0.77 -26.23 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 7 C -0.52 -14.18 9.66 -34.44 -0.33 -14.51 16 8 H 0.07 2.06 7.99 -52.48 -0.42 1.64 16 9 C -0.01 -0.24 4.04 -27.89 -0.11 -0.35 16 10 C -0.11 -1.91 5.27 -26.73 -0.14 -2.05 16 11 C 0.11 1.65 5.67 -4.05 -0.02 1.62 16 12 N -0.71 -8.10 5.52 -61.46 -0.34 -8.44 16 13 C 0.57 7.04 7.79 -12.62 -0.10 6.95 16 14 O -0.53 -8.63 16.80 5.24 0.09 -8.55 16 15 C -0.15 -1.39 5.98 -104.63 -0.63 -2.02 16 16 C -0.18 -1.02 10.38 29.93 0.31 -0.70 16 17 S 0.33 1.89 22.79 -107.50 -2.45 -0.56 16 18 C -0.20 -1.85 7.44 -11.50 -0.09 -1.93 16 19 N 0.06 0.67 4.46 33.27 0.15 0.82 16 20 O -0.14 -1.70 18.91 -29.46 -0.56 -2.26 16 21 O -0.15 -1.76 19.05 -29.46 -0.56 -2.32 16 22 C 0.02 0.17 9.69 -39.02 -0.38 -0.21 16 23 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 24 H 0.02 0.43 7.20 -51.93 -0.37 0.06 16 25 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.40 3.21 6.97 -40.82 -0.28 2.92 16 31 H 0.20 0.49 7.01 -52.49 -0.37 0.12 16 32 H 0.18 1.73 8.01 -52.49 -0.42 1.31 16 LS Contribution 306.73 15.07 4.62 4.62 Total: -1.00 -33.01 306.73 -7.64 -40.66 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -3.12 Total: -2.75 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.58 Total: -11.41 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.58 Total: -33.84 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -1.03 Total: -13.12 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.45 Total: -0.56 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -33.01 -7.64 -40.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171501400.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.807 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds