Wall clock time and date at job start Tue Mar 31 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00404 * 2 1 4 4 H 1.48500 * 109.47454 * 240.00105 * 3 2 1 5 5 H 1.48496 * 109.46966 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46926 * 119.99896 * 3 2 1 7 7 C 1.37884 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00191 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21695 * 120.00046 * 359.97438 * 13 12 11 15 15 C 1.46586 * 119.99696 * 179.97438 * 13 12 11 16 16 C 1.36644 * 125.45416 * 180.02562 * 15 13 12 17 17 C 1.37478 * 113.29422 * 179.97438 * 16 15 13 18 18 C 1.33814 * 115.09918 * 359.97438 * 17 16 15 19 19 N 1.48028 * 124.51832 * 180.02562 * 18 17 16 20 20 O 1.21799 * 119.99961 * 359.97438 * 19 18 17 21 21 O 1.21802 * 119.99907 * 180.02562 * 19 18 17 22 22 S 1.70616 * 110.95808 * 359.75047 * 18 17 16 23 23 H 0.97007 * 119.99539 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 25 25 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 26 26 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 27 27 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 28 28 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 29 29 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 30 30 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 31 31 H 1.08005 * 123.35920 * 359.97438 * 16 15 13 32 32 H 1.08006 * 122.44741 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 6 1.4800 -4.9871 0.0012 12 7 2.4319 -6.1008 0.0018 13 6 1.9825 -7.3714 0.0019 14 8 0.7861 -7.5937 0.0020 15 6 2.9351 -8.4856 0.0020 16 6 2.6040 -9.8113 0.0016 17 6 3.6975 -10.6447 0.0012 18 6 4.8835 -10.0250 0.0007 19 7 6.1918 -10.7175 -0.0004 20 8 6.2365 -11.9347 -0.0004 21 8 7.2235 -10.0701 -0.0003 22 16 4.6865 -8.3302 -0.0062 23 1 -0.4850 0.8401 0.0004 24 1 0.6246 -2.5571 -0.8897 25 1 0.6239 -2.5567 0.8903 26 1 2.8717 -3.6045 0.8906 27 1 2.8717 -3.6045 -0.8894 28 1 0.8530 -5.0451 -0.8886 29 1 0.8535 -5.0445 0.8914 30 1 3.3856 -5.9235 0.0021 31 1 1.5849 -10.1690 0.0016 32 1 3.6059 -11.7208 0.0012 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171506365.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:50 Heat of formation + Delta-G solvation = -17.198889 kcal Electronic energy + Delta-G solvation = -18481.856446 eV Core-core repulsion = 15151.385545 eV Total energy + Delta-G solvation = -3330.470901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.51450 -40.16566 -38.39540 -36.96985 -35.72737 -33.55098 -31.90740 -31.08261 -28.04578 -26.53565 -24.56627 -23.43272 -21.74330 -21.02170 -20.82714 -19.69959 -18.72704 -18.06046 -17.60370 -16.82737 -16.43520 -15.79199 -15.63875 -14.80876 -14.53229 -14.44446 -13.86450 -13.60580 -13.33502 -12.39341 -12.09912 -12.05765 -11.95455 -11.94444 -11.71400 -11.60591 -10.96281 -10.91461 -10.73784 -10.48175 -10.05818 -10.02179 -9.57245 -9.55227 -9.24368 -9.18365 -8.45068 -6.09819 -4.13538 -1.05879 -0.04265 0.47594 0.71570 1.11549 1.54838 2.70020 2.77841 3.26968 3.32281 3.33876 4.06130 4.23108 4.37730 4.38874 4.84731 5.09559 5.26197 5.30601 5.46781 5.55175 5.74442 5.93800 6.04639 6.39802 6.57295 6.82307 7.10986 7.17658 7.52341 7.63309 7.78858 7.87735 8.28038 8.92633 9.51279 11.01346 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031213 B = 0.002766 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.856590 B =10121.197298 C =10992.301228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.714 5.714 13 C 0.578 3.422 14 O -0.512 6.512 15 C -0.207 4.207 16 C -0.076 4.076 17 C -0.050 4.050 18 C -0.206 4.206 19 N 0.059 4.941 20 O -0.139 6.139 21 O -0.153 6.153 22 S 0.346 5.654 23 H 0.263 0.737 24 H 0.020 0.980 25 H 0.020 0.980 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.396 0.604 31 H 0.178 0.822 32 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.502 -20.462 -0.013 22.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.161 4.161 11 C -0.007 4.007 12 N -0.364 5.364 13 C 0.361 3.639 14 O -0.389 6.389 15 C -0.331 4.331 16 C -0.108 4.108 17 C -0.087 4.087 18 C -0.409 4.409 19 N 0.581 4.419 20 O -0.358 6.358 21 O -0.368 6.368 22 S 0.616 5.384 23 H 0.072 0.928 24 H 0.038 0.962 25 H 0.038 0.962 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.231 0.769 31 H 0.196 0.804 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.900 -18.845 -0.024 20.434 hybrid contribution 0.301 -0.519 0.009 0.600 sum 8.200 -19.364 -0.015 21.029 Atomic orbital electron populations 1.69948 1.06086 1.26940 1.50226 1.25025 0.94868 0.99358 0.95125 0.86628 0.79571 0.82984 0.78648 1.20192 1.21227 1.20196 1.21142 0.92978 0.90869 1.51427 0.92632 1.19022 0.93759 0.90715 0.97773 1.21940 0.99951 0.93048 1.01188 1.21853 0.91603 0.84463 1.02790 1.46204 1.11068 1.05630 1.73521 1.16796 0.87128 0.81821 0.78137 1.90894 1.14660 1.84087 1.49277 1.25684 0.97792 0.99473 1.10160 1.20731 1.01268 0.89652 0.99186 1.20228 0.88752 1.04086 0.95651 1.25737 0.88819 1.00947 1.25405 1.42521 1.00918 1.00860 0.97612 1.94574 1.93440 0.94839 1.52941 1.94614 1.21332 1.66901 1.53969 1.83643 0.97512 0.94052 1.63193 0.92777 0.96176 0.96164 0.92465 0.92459 0.90913 0.90919 0.76942 0.80444 0.80849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 20.91 29.54 -169.99 -5.02 15.88 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.53 -14.11 9.11 -34.44 -0.31 -14.42 16 8 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.19 5.27 -26.73 -0.14 -2.33 16 11 C 0.11 1.77 5.67 -4.04 -0.02 1.74 16 12 N -0.71 -8.78 5.55 -61.64 -0.34 -9.12 16 13 C 0.58 7.27 7.78 -12.90 -0.10 7.17 16 14 O -0.51 -8.21 16.84 5.19 0.09 -8.12 16 15 C -0.21 -1.94 6.45 -36.79 -0.24 -2.18 16 16 C -0.08 -0.59 10.01 -40.43 -0.40 -1.00 16 17 C -0.05 -0.36 9.75 -41.41 -0.40 -0.77 16 18 C -0.21 -1.87 7.28 -11.18 -0.08 -1.95 16 19 N 0.06 0.65 4.45 32.56 0.15 0.80 16 20 O -0.14 -1.58 18.89 -29.46 -0.56 -2.14 16 21 O -0.15 -1.83 18.99 -29.46 -0.56 -2.39 16 22 S 0.35 2.75 21.85 -107.50 -2.35 0.40 16 23 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 30 H 0.40 3.87 7.59 -40.82 -0.31 3.56 16 31 H 0.18 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.17 0.89 7.98 -52.48 -0.42 0.47 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -31.38 311.00 -8.34 -39.72 By element: Atomic # 1 Polarization: 0.58 SS G_CDS: -3.23 Total: -2.65 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.94 Total: -11.77 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.54 Total: -33.63 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -1.03 Total: -12.65 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -2.35 Total: 0.40 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.38 -8.34 -39.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171506365.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.522 kcal (2) G-P(sol) polarization free energy of solvation -31.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds