Wall clock time and date at job start Tue Mar 31 2020 06:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47129 * 2 1 4 4 C 1.50701 * 109.46969 * 120.00281 * 2 1 3 5 5 H 1.08000 * 120.00049 * 120.00131 * 4 2 1 6 6 C 1.37876 * 119.99938 * 299.99755 * 4 2 1 7 7 N 1.31515 * 120.00127 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00019 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47035 * 90.00006 * 8 6 4 10 10 H 1.48497 * 109.47081 * 209.99804 * 8 6 4 11 11 H 1.48503 * 109.47040 * 330.00078 * 8 6 4 12 12 N 1.46503 * 109.47049 * 239.99969 * 2 1 3 13 13 C 1.46505 * 120.00094 * 300.00060 * 12 2 1 14 14 C 1.34775 * 119.99550 * 119.99885 * 12 2 1 15 15 O 1.21629 * 120.00429 * 7.14736 * 14 12 2 16 16 C 1.47193 * 119.99493 * 187.14372 * 14 12 2 17 17 C 1.36007 * 123.46496 * 10.23496 * 16 14 12 18 18 S 1.70446 * 110.82027 * 180.02562 * 17 16 14 19 19 C 1.75507 * 92.44105 * 0.02562 * 18 17 16 20 20 N 1.48038 * 124.70851 * 179.97438 * 19 18 17 21 21 O 1.21797 * 119.99725 * 180.02562 * 20 19 18 22 22 O 1.21798 * 119.99902 * 0.02562 * 20 19 18 23 23 C 1.32766 * 110.57815 * 359.71190 * 19 18 17 24 24 H 1.08993 * 109.47245 * 60.00029 * 1 2 3 25 25 H 1.09007 * 109.47217 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47384 * 299.99671 * 1 2 3 27 27 H 0.97001 * 119.99697 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46463 * 95.82500 * 13 12 2 29 29 H 1.08996 * 109.46670 * 215.82689 * 13 12 2 30 30 H 1.09003 * 109.46886 * 335.82743 * 13 12 2 31 31 H 1.07999 * 124.59062 * 0.04275 * 17 16 14 32 32 H 1.08001 * 123.46026 * 180.26221 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3224 -1.1197 4.0079 9 1 3.6305 -0.5442 4.4119 10 1 1.3444 -0.9491 5.1123 11 1 2.4879 -2.5655 3.7121 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0933 -1.4281 14 6 2.7931 -0.0356 -2.0833 15 8 3.1944 1.0843 -1.8299 16 6 3.1538 -0.6755 -3.3588 17 6 2.5896 -1.8300 -3.8046 18 16 3.2436 -2.2811 -5.3126 19 6 4.3068 -0.8853 -5.3535 20 7 5.2537 -0.5788 -6.4493 21 8 5.9535 0.4162 -6.3889 22 8 5.3330 -1.3217 -7.4113 23 6 4.1398 -0.1395 -4.2678 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7082 1.1607 3.4845 28 1 0.7965 -2.1450 -2.0855 29 1 2.5047 -2.6076 -1.8942 30 1 1.4286 -2.5705 -0.4768 31 1 1.8299 -2.3856 -3.2749 32 1 4.6876 0.7725 -4.0819 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550356.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:51 Heat of formation + Delta-G solvation = 21.180356 kcal Electronic energy + Delta-G solvation = -19790.569040 eV Core-core repulsion = 16461.762388 eV Total energy + Delta-G solvation = -3328.806652 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.20851 -39.97412 -37.30742 -36.64562 -35.68376 -33.26910 -31.40261 -29.32805 -27.33652 -26.30222 -25.38251 -24.64498 -22.15277 -20.43683 -20.03565 -18.65612 -18.48310 -17.76018 -17.26882 -16.61000 -15.86753 -15.55262 -14.85020 -14.70483 -13.97777 -13.58768 -13.41916 -13.03027 -12.73518 -12.58504 -11.85832 -11.79523 -11.76750 -11.48678 -11.33633 -11.29173 -11.15261 -10.99654 -10.87265 -10.40729 -10.30561 -9.88437 -9.42743 -9.30411 -8.99553 -8.56319 -7.88919 -6.20394 -4.29399 -0.47708 0.30549 0.77831 1.09977 1.45284 1.65610 3.19240 3.26064 3.26771 3.46977 3.60286 4.27635 4.33542 4.55260 4.73824 5.04659 5.11779 5.19393 5.33244 5.51769 5.54635 6.04903 6.05436 6.56962 6.63546 6.85663 7.15499 7.31240 7.41672 7.55333 7.83349 8.01026 8.23401 8.60088 8.77470 9.37551 10.85052 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.032270 B = 0.003948 C = 0.003847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.465798 B = 7091.385790 C = 7276.617284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.067 0.933 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.578 5.578 13 C 0.065 3.935 14 C 0.562 3.438 15 O -0.536 6.536 16 C -0.147 4.147 17 C -0.200 4.200 18 S 0.297 5.703 19 C -0.204 4.204 20 N 0.063 4.937 21 O -0.144 6.144 22 O -0.160 6.160 23 C 0.021 3.979 24 H 0.012 0.988 25 H 0.031 0.969 26 H 0.097 0.903 27 H 0.265 0.735 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.093 0.907 31 H 0.219 0.781 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.575 -8.685 -13.266 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.158 3.842 3 H 0.084 0.916 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.308 5.308 13 C -0.079 4.079 14 C 0.347 3.653 15 O -0.415 6.415 16 C -0.165 4.165 17 C -0.339 4.339 18 S 0.563 5.437 19 C -0.404 4.404 20 N 0.584 4.416 21 O -0.363 6.363 22 O -0.374 6.374 23 C -0.015 4.015 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.112 0.888 31 H 0.235 0.765 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.032 -9.355 -13.439 16.374 hybrid contribution 0.735 0.770 1.634 1.950 sum 0.703 -8.585 -11.805 14.613 Atomic orbital electron populations 1.22117 0.97762 0.99588 1.01112 1.19079 0.90987 0.94621 0.79466 0.91558 1.21262 1.32261 1.13273 0.90138 0.92132 1.24887 0.94761 0.94936 0.99033 1.69865 1.35968 1.22481 1.24016 0.86466 0.78756 0.79790 0.82209 1.20498 1.21030 1.19902 1.48145 1.48093 1.11220 1.23380 1.22198 0.98413 0.83896 1.03378 1.17305 0.79955 0.85781 0.82262 1.90801 1.53819 1.19393 1.77438 1.20412 1.00264 0.96812 0.98977 1.27782 1.04952 1.00727 1.00455 1.83370 1.28309 1.18011 1.14037 1.25876 1.08303 1.08814 0.97381 1.42515 0.99177 0.99768 1.00159 1.94593 1.39876 1.16907 1.84883 1.94558 1.73361 1.46828 1.22680 1.21439 0.93046 0.98763 0.88220 0.96891 0.95006 0.88499 0.92493 0.93059 0.91805 0.88847 0.76467 0.80248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.97 37.16 0.33 -2.91 16 2 C 0.26 6.14 2.62 -69.08 -0.18 5.96 16 3 H 0.07 1.85 6.92 -51.93 -0.36 1.49 16 4 C -0.53 -13.49 7.95 -34.44 -0.27 -13.77 16 5 H 0.06 1.51 7.43 -52.49 -0.39 1.12 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -23.97 11.32 55.43 0.63 -23.34 16 8 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 12 N -0.58 -11.16 2.75 -176.61 -0.49 -11.65 16 13 C 0.06 0.90 7.53 59.85 0.45 1.35 16 14 C 0.56 10.86 7.62 -12.62 -0.10 10.77 16 15 O -0.54 -12.57 16.17 5.25 0.08 -12.49 16 16 C -0.15 -2.12 5.82 -104.63 -0.61 -2.73 16 17 C -0.20 -2.09 8.76 29.93 0.26 -1.83 16 18 S 0.30 2.73 22.79 -107.50 -2.45 0.28 16 19 C -0.20 -2.59 7.44 -11.50 -0.09 -2.68 16 20 N 0.06 0.89 4.45 33.27 0.15 1.04 16 21 O -0.14 -2.18 18.91 -29.46 -0.56 -2.74 16 22 O -0.16 -2.25 19.05 -29.46 -0.56 -2.81 16 23 C 0.02 0.28 9.71 -39.02 -0.38 -0.10 16 24 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 25 H 0.03 0.63 7.67 -51.92 -0.40 0.23 16 26 H 0.10 2.39 6.07 -51.93 -0.32 2.07 16 27 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.05 0.56 6.99 -51.93 -0.36 0.20 16 29 H 0.06 0.71 5.60 -51.93 -0.29 0.42 16 30 H 0.09 1.41 7.11 -51.93 -0.37 1.04 16 31 H 0.22 1.79 3.88 -52.49 -0.20 1.58 16 32 H 0.18 2.51 8.01 -52.49 -0.42 2.09 16 LS Contribution 294.18 15.07 4.43 4.43 Total: -1.00 -30.17 294.18 -7.12 -37.29 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -2.67 Total: -0.86 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -0.67 Total: -4.30 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.29 Total: -33.94 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.03 Total: -18.03 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -2.45 Total: 0.28 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -30.17 -7.12 -37.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550356.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.475 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds