Wall clock time and date at job start Tue Mar 31 2020 06:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47178 * 2 1 4 4 C 1.50701 * 109.47290 * 239.99888 * 2 1 3 5 5 H 1.07998 * 119.99705 * 239.99914 * 4 2 1 6 6 C 1.37879 * 119.99890 * 59.99843 * 4 2 1 7 7 N 1.31511 * 119.99795 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00001 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47139 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47576 * 120.00026 * 8 6 4 11 11 H 1.48497 * 109.47031 * 240.00491 * 8 6 4 12 12 N 1.46501 * 109.47143 * 119.99690 * 2 1 3 13 13 C 1.46498 * 119.99934 * 60.00053 * 12 2 1 14 14 C 1.34774 * 120.00481 * 240.00291 * 12 2 1 15 15 O 1.21643 * 119.99614 * 7.24064 * 14 12 2 16 16 C 1.47185 * 120.00364 * 187.24977 * 14 12 2 17 17 C 1.36018 * 123.46033 * 9.62984 * 16 14 12 18 18 S 1.70442 * 110.81538 * 179.86150 * 17 16 14 19 19 C 1.75511 * 92.44656 * 0.34487 * 18 17 16 20 20 N 1.48032 * 124.71110 * 179.82975 * 19 18 17 21 21 O 1.21801 * 119.99714 * 179.97438 * 20 19 18 22 22 O 1.21795 * 119.99865 * 359.97019 * 20 19 18 23 23 C 1.32761 * 110.57341 * 359.80449 * 19 18 17 24 24 H 1.08994 * 109.46901 * 300.00292 * 1 2 3 25 25 H 1.08998 * 109.46790 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46743 * 59.99711 * 1 2 3 27 27 H 0.97002 * 120.00181 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47508 * 95.83339 * 13 12 2 29 29 H 1.08999 * 109.47839 * 215.83859 * 13 12 2 30 30 H 1.09008 * 109.47264 * 335.83775 * 13 12 2 31 31 H 1.08000 * 124.58506 * 359.97438 * 17 16 14 32 32 H 1.08000 * 123.45775 * 179.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1455 -2.2877 -3.6037 10 1 1.1662 -1.5868 -4.8161 11 1 3.1467 -0.1874 -4.8164 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0356 2.0834 15 8 2.9790 1.1604 1.9620 16 6 3.4146 -0.7674 3.1990 17 6 3.4138 -2.1239 3.2991 18 16 4.2236 -2.6275 4.7117 19 6 4.5680 -0.9754 5.1937 20 7 5.2988 -0.5906 6.4222 21 8 5.4909 0.5856 6.6733 22 8 5.7079 -1.4503 7.1819 23 6 4.0825 -0.1188 4.3032 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 -0.8900 27 1 0.7095 1.1618 -3.4844 28 1 2.4662 -2.7353 1.0634 29 1 1.5222 -2.2603 2.4957 30 1 0.7415 -2.3275 0.8976 31 1 2.9627 -2.7914 2.5798 32 1 4.1769 0.9531 4.3951 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171550359.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:52 Heat of formation + Delta-G solvation = 21.964745 kcal Electronic energy + Delta-G solvation = -19798.046553 eV Core-core repulsion = 16469.273915 eV Total energy + Delta-G solvation = -3328.772638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.20555 -39.97526 -37.30557 -36.64273 -35.69054 -33.27743 -31.41143 -29.31782 -27.35404 -26.29705 -25.39351 -24.64452 -22.14461 -20.43036 -20.04993 -18.66325 -18.47414 -17.75724 -17.26159 -16.66047 -15.73370 -15.50962 -14.98261 -14.73656 -13.95883 -13.65076 -13.38459 -13.07245 -12.68485 -12.65513 -11.83145 -11.79644 -11.73133 -11.48635 -11.33415 -11.32867 -11.18586 -10.93283 -10.86465 -10.39426 -10.32571 -9.86889 -9.42132 -9.31918 -8.98940 -8.58068 -7.88520 -6.21719 -4.31209 -0.47015 0.31362 0.78495 1.10937 1.45985 1.65974 3.16441 3.24797 3.26522 3.51237 3.55946 4.26260 4.35203 4.55573 4.75012 5.03386 5.10888 5.19621 5.31957 5.53595 5.59833 5.94144 6.05606 6.59299 6.65099 6.86766 7.17137 7.29842 7.42020 7.54635 7.83671 7.99384 8.23555 8.58581 8.76636 9.36048 10.83628 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.031690 B = 0.004009 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.334849 B = 6982.264606 C = 7225.776057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.258 3.742 3 H 0.067 0.933 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.578 5.578 13 C 0.067 3.933 14 C 0.564 3.436 15 O -0.538 6.538 16 C -0.148 4.148 17 C -0.200 4.200 18 S 0.297 5.703 19 C -0.204 4.204 20 N 0.063 4.937 21 O -0.145 6.145 22 O -0.160 6.160 23 C 0.020 3.980 24 H 0.014 0.986 25 H 0.031 0.969 26 H 0.096 0.904 27 H 0.265 0.735 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.220 0.780 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.645 -9.447 12.005 15.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.085 0.915 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.308 5.308 13 C -0.076 4.076 14 C 0.348 3.652 15 O -0.417 6.417 16 C -0.165 4.165 17 C -0.339 4.339 18 S 0.563 5.437 19 C -0.404 4.404 20 N 0.584 4.416 21 O -0.363 6.363 22 O -0.374 6.374 23 C -0.015 4.015 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.115 0.885 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.236 0.764 32 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 2.611 -10.319 11.830 15.914 hybrid contribution 0.151 0.972 -1.310 1.639 sum 2.762 -9.347 10.520 14.341 Atomic orbital electron populations 1.22110 0.97837 0.99497 1.01205 1.19092 0.91226 0.94605 0.79216 0.91527 1.21303 1.32331 1.13255 0.90110 0.92155 1.24891 0.94790 0.94927 0.99042 1.69878 1.36001 1.22401 1.23936 0.86409 0.78641 0.79553 0.82603 1.19821 1.20826 1.20796 1.48142 1.47966 1.11502 1.23237 1.22171 1.01966 0.83659 0.99851 1.17288 0.79875 0.86655 0.81344 1.90798 1.62227 1.14007 1.74676 1.20401 1.05457 0.92232 0.98408 1.27828 1.01711 1.00870 1.03462 1.83376 1.48442 0.98522 1.13349 1.25875 1.16540 1.01882 0.96112 1.42512 0.98276 1.00709 1.00108 1.94592 1.60918 1.02014 1.78775 1.94557 1.52829 1.45656 1.44384 1.21429 0.88806 1.02767 0.88488 0.96722 0.94997 0.88534 0.92523 0.92480 0.91953 0.89519 0.76364 0.80270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.96 37.16 0.33 -2.97 16 2 C 0.26 6.14 2.62 -69.08 -0.18 5.96 16 3 H 0.07 1.86 6.92 -51.93 -0.36 1.50 16 4 C -0.53 -13.41 8.37 -34.44 -0.29 -13.70 16 5 H 0.06 1.48 7.65 -52.49 -0.40 1.08 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -23.88 11.32 55.43 0.63 -23.26 16 8 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 9 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.58 -11.17 2.75 -176.61 -0.49 -11.65 16 13 C 0.07 0.93 7.79 59.85 0.47 1.40 16 14 C 0.56 10.89 7.62 -12.63 -0.10 10.80 16 15 O -0.54 -12.56 16.17 5.24 0.08 -12.48 16 16 C -0.15 -2.14 5.83 -104.63 -0.61 -2.75 16 17 C -0.20 -2.13 8.77 29.94 0.26 -1.87 16 18 S 0.30 2.78 22.79 -107.50 -2.45 0.33 16 19 C -0.20 -2.61 7.44 -11.50 -0.09 -2.69 16 20 N 0.06 0.90 4.45 33.26 0.15 1.04 16 21 O -0.14 -2.18 18.91 -29.46 -0.56 -2.74 16 22 O -0.16 -2.25 19.05 -29.46 -0.56 -2.81 16 23 C 0.02 0.28 9.71 -39.02 -0.38 -0.10 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.03 0.64 6.67 -51.93 -0.35 0.29 16 26 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 27 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 28 H 0.06 0.70 7.01 -51.93 -0.36 0.33 16 29 H 0.06 0.65 5.58 -51.93 -0.29 0.36 16 30 H 0.09 1.23 6.44 -51.92 -0.33 0.90 16 31 H 0.22 1.89 3.85 -52.49 -0.20 1.69 16 32 H 0.18 2.49 8.01 -52.49 -0.42 2.07 16 LS Contribution 293.37 15.07 4.42 4.42 Total: -1.00 -30.07 293.37 -7.06 -37.13 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -2.59 Total: -0.67 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -0.67 Total: -4.30 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 0.29 Total: -33.86 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.03 Total: -18.03 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: 2.78 SS G_CDS: -2.45 Total: 0.33 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.07 -7.06 -37.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171550359.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.092 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds