Wall clock time and date at job start Tue Mar 31 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86804 * 120.00170 * 2 1 4 4 H 1.48504 * 109.46882 * 239.99942 * 3 2 1 5 5 H 1.48505 * 109.46885 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.46906 * 119.99908 * 3 2 1 7 7 C 1.38800 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99838 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00219 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00134 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46824 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47004 * 179.97438 * 11 10 9 13 13 N 1.46498 * 109.47597 * 180.02562 * 12 11 10 14 14 C 1.35760 * 119.62549 * 270.02342 * 13 12 11 15 15 C 1.35358 * 120.70309 * 179.72864 * 14 13 12 16 16 C 1.40194 * 119.94528 * 0.50470 * 15 14 13 17 17 C 1.36404 * 119.26746 * 359.47918 * 16 15 14 18 18 N 1.48000 * 120.34909 * 180.25595 * 17 16 15 19 19 O 1.21803 * 119.99909 * 0.02562 * 18 17 16 20 20 O 1.21795 * 119.99884 * 180.02562 * 18 17 16 21 21 C 1.34669 * 119.62528 * 89.99613 * 13 12 11 22 22 O 1.22056 * 119.98376 * 0.02562 * 21 13 12 23 23 H 0.96993 * 119.99796 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46990 * 60.00602 * 10 9 7 25 25 H 1.09000 * 109.47160 * 299.99782 * 10 9 7 26 26 H 1.09003 * 109.47315 * 60.00528 * 11 10 9 27 27 H 1.08996 * 109.47762 * 300.00118 * 11 10 9 28 28 H 1.08999 * 109.47218 * 59.99714 * 12 11 10 29 29 H 1.09008 * 109.47287 * 300.00508 * 12 11 10 30 30 H 1.08000 * 119.65013 * 0.02562 * 14 13 12 31 31 H 1.07991 * 120.02568 * 180.28576 * 15 14 13 32 32 H 1.08002 * 120.36883 * 179.75933 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9793 -5.3242 0.0001 12 6 3.1513 -6.3078 -0.0005 13 7 2.6376 -7.6797 -0.0005 14 6 2.4024 -8.3082 1.1796 15 6 1.9227 -9.5737 1.2051 16 6 1.6739 -10.2521 0.0037 17 6 1.9104 -9.6189 -1.1811 18 7 1.6508 -10.3105 -2.4635 19 8 1.2232 -11.4510 -2.4647 20 8 1.8647 -9.7392 -3.5177 21 6 2.4036 -8.3029 -1.1712 22 8 2.6201 -7.7246 -2.2240 23 1 -0.4849 0.8400 -0.0004 24 1 3.1244 -3.7314 0.8895 25 1 3.1245 -3.7314 -0.8905 26 1 1.3705 -5.4846 -0.8897 27 1 1.3709 -5.4841 0.8902 28 1 3.7606 -6.1475 0.8889 29 1 3.7594 -6.1478 -0.8910 30 1 2.5955 -7.7913 2.1080 31 1 1.7351 -10.0616 2.1500 32 1 1.2948 -11.2633 0.0160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174016137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:20 Heat of formation + Delta-G solvation = -11.492458 kcal Electronic energy + Delta-G solvation = -19141.545442 eV Core-core repulsion = 15811.321990 eV Total energy + Delta-G solvation = -3330.223451 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.51038 -41.43369 -37.68590 -36.33048 -36.10996 -33.05376 -32.51052 -31.03317 -27.29012 -26.99310 -25.64125 -23.60478 -23.39456 -21.70074 -19.58763 -18.95660 -17.75708 -17.57987 -17.52105 -17.49406 -16.42366 -16.05764 -15.21552 -14.99721 -14.88387 -14.27364 -13.57366 -13.50196 -13.19996 -12.70177 -12.48464 -12.25340 -11.90095 -11.49355 -11.27283 -11.12549 -11.11259 -11.01992 -10.98897 -10.80150 -10.70463 -10.42749 -9.74024 -9.13983 -8.83120 -8.46227 -6.65919 -6.31658 -4.04075 -0.55343 1.05068 1.15211 1.20821 2.10144 2.87380 3.14114 3.17854 3.22726 3.41206 3.74723 3.88190 4.12727 4.16983 4.21539 4.56114 4.82429 4.89894 5.04714 5.09616 5.11150 5.19641 5.28867 5.47978 5.56244 5.80348 5.96002 6.15749 6.28624 6.38939 6.44548 7.35282 7.51332 7.73349 8.26993 9.14557 10.76470 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.033758 B = 0.003096 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.223210 B = 9041.647099 C = 9396.229202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.073 0.927 9 S -0.125 6.125 10 C -0.114 4.114 11 C -0.113 4.113 12 C 0.088 3.912 13 N -0.483 5.483 14 C 0.207 3.793 15 C -0.258 4.258 16 C 0.086 3.914 17 C -0.194 4.194 18 N 0.052 4.948 19 O -0.193 6.193 20 O -0.128 6.128 21 C 0.531 3.469 22 O -0.483 6.483 23 H 0.269 0.731 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.184 0.816 31 H 0.169 0.831 32 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.751 -19.363 7.646 21.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.092 0.908 9 S 0.103 5.897 10 C -0.263 4.263 11 C -0.152 4.152 12 C -0.033 4.033 13 N -0.191 5.191 14 C 0.074 3.926 15 C -0.281 4.281 16 C 0.062 3.938 17 C -0.284 4.284 18 N 0.568 4.432 19 O -0.398 6.398 20 O -0.351 6.351 21 C 0.327 3.673 22 O -0.358 6.358 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.097 0.903 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.128 0.872 30 H 0.201 0.799 31 H 0.187 0.813 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 4.732 -18.705 7.503 20.702 hybrid contribution 1.699 1.043 -0.145 1.999 sum 6.431 -17.661 7.358 20.185 Atomic orbital electron populations 1.70000 1.05967 1.27645 1.46808 1.25025 0.95099 0.99174 0.94402 0.86198 0.79243 0.81057 0.78901 1.19827 1.20747 1.19898 1.22632 0.94505 0.90589 1.59122 0.90846 1.84714 1.08678 0.99414 1.96905 1.23167 1.03597 0.96107 1.03424 1.21660 0.96415 0.93174 1.03956 1.22510 0.98464 0.76255 1.06120 1.45922 1.51240 1.16051 1.05882 1.22709 0.86420 0.92893 0.90579 1.20697 1.13060 0.95412 0.98952 1.21616 0.82290 0.99995 0.89874 1.21624 1.24016 0.97115 0.85646 1.42817 0.98087 1.00232 1.02049 1.94499 1.48558 1.02763 1.93932 1.94653 1.54172 1.67662 1.18624 1.15954 0.81203 0.85887 0.84236 1.91173 1.50246 1.66109 1.28311 0.92106 0.91668 0.91426 0.90347 0.90820 0.87890 0.87210 0.79874 0.81309 0.81945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.46 13.22 55.49 0.73 -24.72 16 2 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 3 Si 0.92 21.00 29.55 -169.99 -5.02 15.97 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.52 -14.42 9.50 30.94 0.29 -14.12 16 8 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 9 S -0.13 -3.13 21.44 -107.50 -2.30 -5.43 16 10 C -0.11 -2.04 5.67 37.16 0.21 -1.83 16 11 C -0.11 -1.57 5.54 -26.73 -0.15 -1.72 16 12 C 0.09 0.88 5.33 -4.04 -0.02 0.86 16 13 N -0.48 -4.60 2.58 -119.77 -0.31 -4.91 16 14 C 0.21 1.03 10.28 -16.84 -0.17 0.85 16 15 C -0.26 -1.08 10.01 -39.87 -0.40 -1.48 16 16 C 0.09 0.63 9.60 -39.51 -0.38 0.25 16 17 C -0.19 -2.41 6.88 -79.75 -0.55 -2.96 16 18 N 0.05 0.81 4.45 34.06 0.15 0.96 16 19 O -0.19 -2.84 18.47 -29.46 -0.54 -3.39 16 20 O -0.13 -2.34 17.44 -36.39 -0.63 -2.97 16 21 C 0.53 7.26 7.40 -15.44 -0.11 7.14 16 22 O -0.48 -8.73 14.81 -16.91 -0.25 -8.98 16 23 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 24 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 25 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 26 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.10 0.66 8.01 -51.93 -0.42 0.24 16 29 H 0.11 1.28 7.39 -51.92 -0.38 0.89 16 30 H 0.18 0.15 8.04 -52.49 -0.42 -0.27 16 31 H 0.17 0.10 8.06 -52.49 -0.42 -0.32 16 32 H 0.16 0.84 7.62 -52.49 -0.40 0.44 16 LS Contribution 306.81 15.07 4.62 4.62 Total: -1.00 -36.65 306.81 -8.21 -44.86 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: -3.28 Total: -4.92 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: -1.38 Total: -11.09 kcal Atomic # 7 Polarization: -29.25 SS G_CDS: 0.58 Total: -28.67 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: -1.43 Total: -15.34 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.30 Total: -5.43 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -36.65 -8.21 -44.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174016137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.367 kcal (2) G-P(sol) polarization free energy of solvation -36.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds