Wall clock time and date at job start Tue Mar 31 2020 05:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86801 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47433 * 274.98578 * 3 2 1 5 5 H 1.48500 * 109.47192 * 34.98895 * 3 2 1 6 6 H 1.48498 * 109.46656 * 154.98535 * 3 2 1 7 7 C 1.40045 * 120.00076 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00089 * 186.14717 * 7 2 1 9 9 C 1.46378 * 119.99804 * 6.14730 * 7 2 1 10 10 O 1.21689 * 120.00565 * 353.94021 * 9 7 2 11 11 N 1.34783 * 119.99766 * 173.94284 * 9 7 2 12 12 C 1.46498 * 119.99949 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47257 * 179.97438 * 12 11 9 14 14 C 1.38237 * 120.00879 * 259.72299 * 13 12 11 15 15 C 1.38221 * 120.01824 * 179.76745 * 14 13 12 16 16 C 1.38265 * 120.02186 * 0.50530 * 15 14 13 17 17 N 1.48024 * 119.99042 * 179.72458 * 16 15 14 18 18 O 1.21799 * 119.99831 * 180.02562 * 17 16 15 19 19 O 1.21795 * 120.00227 * 0.02562 * 17 16 15 20 20 C 1.38187 * 120.01428 * 359.74550 * 16 15 14 21 21 C 1.38331 * 120.00868 * 79.99619 * 13 12 11 22 22 Cl 1.73596 * 120.01512 * 359.97438 * 21 13 12 23 23 H 0.97001 * 120.00206 * 359.97438 * 1 2 3 24 24 H 0.96999 * 119.99758 * 359.97438 * 11 9 7 25 25 H 1.09002 * 109.46895 * 299.99322 * 12 11 9 26 26 H 1.09000 * 109.47316 * 59.99279 * 12 11 9 27 27 H 1.08002 * 119.98948 * 359.97438 * 14 13 12 28 28 H 1.07993 * 119.98895 * 180.25049 * 15 14 13 29 29 H 1.08007 * 120.00674 * 180.02562 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3828 2.1073 -1.3947 5 1 1.4948 2.6200 0.8028 6 1 3.5869 1.4120 0.5920 7 6 2.0070 -1.2128 -0.0005 8 1 3.0823 -1.2156 0.0996 9 6 1.2814 -2.4768 -0.1369 10 8 0.0645 -2.4827 -0.1388 11 7 1.9611 -3.6341 -0.2602 12 6 1.2349 -4.8990 -0.3972 13 6 2.2199 -6.0331 -0.5182 14 6 2.5114 -6.5661 -1.7599 15 6 3.4184 -7.6031 -1.8717 16 6 4.0267 -8.1150 -0.7405 17 7 4.9934 -9.2296 -0.8603 18 8 5.5290 -9.6809 0.1361 19 8 5.2531 -9.6954 -1.9553 20 6 3.7323 -7.5865 0.5019 21 6 2.8282 -6.5449 0.6139 22 17 2.4579 -5.8805 2.1743 23 1 -0.4850 0.8400 0.0004 24 1 2.9311 -3.6293 -0.2590 25 1 0.6073 -5.0546 0.4804 26 1 0.6098 -4.8644 -1.2894 27 1 2.0328 -6.1699 -2.6433 28 1 3.6488 -8.0164 -2.8424 29 1 4.2079 -7.9862 1.3854 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187539008.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:05 Heat of formation + Delta-G solvation = -25.479211 kcal Electronic energy + Delta-G solvation = -18979.543685 eV Core-core repulsion = 15510.836922 eV Total energy + Delta-G solvation = -3468.706763 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.040 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.39137 -40.01024 -37.38009 -36.81530 -36.70653 -34.26279 -32.58085 -31.64236 -31.35168 -28.06168 -26.30124 -24.42244 -23.53894 -21.89384 -19.89037 -19.65878 -18.89236 -17.74380 -17.66057 -16.25292 -15.93173 -15.57215 -15.40596 -14.66049 -14.41282 -14.04471 -13.68844 -13.49685 -12.51329 -12.24673 -12.01449 -11.98311 -11.79793 -11.55599 -11.48321 -11.33977 -11.26756 -11.05965 -10.94556 -10.57463 -10.31955 -9.82404 -9.36858 -8.95388 -7.77348 -7.75847 -6.31364 -4.75977 -0.45819 0.48509 1.05316 1.06860 1.83070 2.82873 3.07087 3.15118 3.18306 4.01310 4.05766 4.23143 4.24342 4.41412 4.48884 4.65338 4.84699 5.10766 5.25002 5.37041 5.46036 5.68536 5.79567 6.07742 6.15607 6.17941 7.33266 7.42308 7.70019 7.85563 8.18524 8.91256 9.32314 10.45252 10.63201 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.027760 B = 0.003784 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.386909 B = 7397.814121 C = 7573.747499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.909 3.091 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.069 0.931 9 C 0.557 3.443 10 O -0.577 6.577 11 N -0.759 5.759 12 C 0.159 3.841 13 C -0.026 4.026 14 C -0.092 4.092 15 C -0.052 4.052 16 C -0.041 4.041 17 N 0.032 4.968 18 O -0.160 6.160 19 O -0.158 6.158 20 C -0.050 4.050 21 C -0.031 4.031 22 Cl -0.021 7.021 23 H 0.270 0.730 24 H 0.381 0.619 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.160 0.840 28 H 0.159 0.841 29 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.702 -13.188 -1.364 14.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.087 0.913 9 C 0.362 3.638 10 O -0.460 6.460 11 N -0.416 5.416 12 C 0.035 3.965 13 C -0.027 4.027 14 C -0.111 4.111 15 C -0.071 4.071 16 C -0.124 4.124 17 N 0.552 4.448 18 O -0.376 6.376 19 O -0.374 6.374 20 C -0.070 4.070 21 C -0.059 4.059 22 Cl 0.009 6.991 23 H 0.080 0.920 24 H 0.213 0.787 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.177 0.823 28 H 0.177 0.823 29 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.089 -12.475 -1.146 13.522 hybrid contribution 1.207 0.462 0.122 1.298 sum 6.296 -12.014 -1.024 13.602 Atomic orbital electron populations 1.70013 1.07083 1.27475 1.34848 1.25703 0.94630 1.00351 0.92552 0.86341 0.80250 0.81356 0.78749 1.19744 1.20375 1.18850 1.20837 0.94143 0.89266 1.53725 0.91304 1.18251 0.87127 0.82002 0.76406 1.90616 1.14025 1.85955 1.55379 1.46202 1.08578 1.04368 1.82426 1.20000 0.91729 0.81874 1.02935 1.20718 0.94791 0.95755 0.91468 1.21219 0.96990 0.94976 0.97929 1.21153 0.93259 0.94494 0.98227 1.20898 0.99870 0.95169 0.96487 1.43523 1.00025 1.00826 1.00473 1.94551 1.52099 1.62689 1.28239 1.94540 1.66766 1.61717 1.14413 1.20811 0.95303 0.93767 0.97138 1.20686 0.99178 0.96719 0.89302 1.98454 1.93058 1.84138 1.23490 0.91967 0.78703 0.90763 0.91140 0.82250 0.82342 0.82055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.11 11.85 55.55 0.66 -21.45 15 2 C 0.09 2.36 5.49 -17.37 -0.10 2.26 15 3 Si 0.91 19.44 29.56 -169.99 -5.03 14.42 15 4 H -0.27 -5.71 7.11 56.52 0.40 -5.30 15 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 15 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.54 -14.58 9.53 -35.63 -0.34 -14.92 15 8 H 0.07 1.70 7.85 -52.49 -0.41 1.29 15 9 C 0.56 14.78 7.74 -12.98 -0.10 14.68 15 10 O -0.58 -17.63 15.05 5.20 0.08 -17.55 15 11 N -0.76 -15.23 5.54 -62.90 -0.35 -15.58 15 12 C 0.16 2.63 5.21 -5.20 -0.03 2.60 15 13 C -0.03 -0.32 5.25 -104.59 -0.55 -0.87 15 14 C -0.09 -0.92 9.67 -39.59 -0.38 -1.30 15 15 C -0.05 -0.50 9.55 -39.58 -0.38 -0.88 15 16 C -0.04 -0.46 6.85 -79.95 -0.55 -1.01 15 17 N 0.03 0.41 4.45 33.96 0.15 0.56 15 18 O -0.16 -2.15 18.45 -29.46 -0.54 -2.70 15 19 O -0.16 -2.07 18.45 -29.46 -0.54 -2.61 15 20 C -0.05 -0.56 9.34 -39.55 -0.37 -0.92 15 21 C -0.03 -0.37 6.31 -39.50 -0.25 -0.62 15 22 Cl -0.02 -0.28 27.52 -51.86 -1.43 -1.71 15 23 H 0.27 7.06 8.29 -40.82 -0.34 6.72 15 24 H 0.38 6.87 8.44 -40.82 -0.34 6.53 15 25 H 0.07 1.33 7.36 -51.93 -0.38 0.95 15 26 H 0.07 1.17 8.00 -51.93 -0.42 0.76 15 27 H 0.16 1.29 8.03 -52.49 -0.42 0.87 15 28 H 0.16 1.20 7.61 -52.49 -0.40 0.80 15 29 H 0.16 1.58 7.61 -52.48 -0.40 1.18 15 LS Contribution 290.36 15.07 4.38 4.38 Total: -1.00 -32.40 290.36 -7.57 -39.98 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -1.91 Total: 3.25 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.04 Total: -0.98 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.46 Total: -36.47 kcal Atomic # 8 Polarization: -21.85 SS G_CDS: -1.01 Total: -22.86 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.03 Total: 14.42 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.43 Total: -1.71 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -32.40 -7.57 -39.98 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187539008.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.496 kcal (2) G-P(sol) polarization free energy of solvation -32.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds