Wall clock time and date at job start Tue Mar 31 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47113 * 49.06978 * 3 2 1 5 5 N 1.46502 * 109.46960 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00157 * 275.00471 * 5 4 3 7 7 C 1.50701 * 109.46634 * 275.00012 * 6 5 4 8 8 H 1.08005 * 120.00269 * 359.97438 * 7 6 5 9 9 C 1.37876 * 119.99976 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99913 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99991 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47131 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47134 * 119.99735 * 11 9 7 14 14 H 1.48498 * 109.47212 * 239.99768 * 11 9 7 15 15 S 1.65600 * 119.99907 * 94.99665 * 5 4 3 16 16 O 1.42097 * 106.40441 * 336.46183 * 15 5 4 17 17 O 1.42095 * 106.40278 * 203.53937 * 15 5 4 18 18 C 1.76200 * 107.21598 * 90.00238 * 15 5 4 19 19 C 1.34512 * 125.79278 * 89.99805 * 18 15 5 20 20 C 1.41376 * 106.84688 * 179.75094 * 19 18 15 21 21 C 1.34517 * 106.83881 * 0.37683 * 20 19 18 22 22 O 1.34305 * 125.78831 * 269.97906 * 18 15 5 23 23 H 1.08996 * 109.46947 * 289.06636 * 3 2 1 24 24 H 1.08998 * 109.46781 * 169.07259 * 3 2 1 25 25 H 1.08992 * 109.46784 * 60.00080 * 4 3 2 26 26 H 1.08992 * 109.46862 * 299.99819 * 4 3 2 27 27 H 1.08996 * 109.47343 * 34.99473 * 6 5 4 28 28 H 1.08993 * 109.47556 * 155.00329 * 6 5 4 29 29 H 0.97004 * 119.99841 * 179.97438 * 10 9 7 30 30 H 1.08006 * 126.57585 * 359.97438 * 19 18 15 31 31 H 1.07998 * 126.58562 * 180.23597 * 20 19 18 32 32 H 1.08002 * 125.79423 * 179.89440 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1185 -0.9441 -1.0898 5 7 4.5835 -0.9430 -1.0902 6 6 5.3151 0.0848 -1.8349 7 6 5.4589 -0.3434 -3.2726 8 1 5.0470 -1.2870 -3.5989 9 6 6.1173 0.4689 -4.1713 10 7 6.6193 1.6177 -3.7740 11 14 6.2962 -0.0623 -5.9533 12 1 5.6496 -1.3856 -6.1426 13 1 5.6445 0.9384 -6.8359 14 1 7.7372 -0.1621 -6.2977 15 16 5.4126 -2.1035 -0.2486 16 8 4.5316 -2.5719 0.7631 17 8 6.6952 -1.5584 0.0290 18 6 5.6742 -3.4568 -1.3462 19 6 6.7355 -3.6186 -2.1567 20 6 6.5395 -4.8346 -2.8506 21 6 5.3660 -5.3392 -2.4288 22 8 4.8479 -4.5020 -1.5152 23 1 2.9715 -0.3349 0.9713 24 1 2.9709 1.0099 -0.1948 25 1 2.7550 -0.6085 -2.0610 26 1 2.7557 -1.9532 -0.8949 27 1 4.7670 1.0259 -1.7893 28 1 6.3033 0.2182 -1.3950 29 1 7.0828 2.1890 -4.4062 30 1 7.5777 -2.9497 -2.2555 31 1 7.2032 -5.2732 -3.5810 32 1 4.9186 -6.2632 -2.7643 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188693510.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:45 Heat of formation + Delta-G solvation = -27.429559 kcal Electronic energy + Delta-G solvation = -20514.920395 eV Core-core repulsion = 17184.005859 eV Total energy + Delta-G solvation = -3330.914536 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.34968 -37.22375 -36.84702 -35.74991 -35.49900 -32.92999 -32.86592 -30.75534 -29.63115 -27.06165 -23.88804 -22.43166 -21.90100 -21.69550 -18.99310 -17.87970 -17.60561 -16.93991 -16.52666 -15.88272 -15.71691 -15.63856 -14.68956 -14.64439 -13.90273 -13.70356 -13.35419 -12.77031 -12.74573 -12.62839 -12.58037 -12.33235 -12.04210 -11.77777 -11.72611 -11.55034 -11.25743 -11.21676 -11.04392 -10.69909 -10.59129 -10.21416 -9.96770 -9.84450 -8.91770 -8.60497 -8.35437 -6.22740 -4.29505 0.69149 1.45613 2.59276 2.89665 2.96957 3.11172 3.17686 3.27148 3.29566 3.48633 4.04974 4.27261 4.28894 4.83831 5.07296 5.09090 5.11363 5.14046 5.27544 5.62185 5.64373 5.70982 5.89084 5.98703 6.15595 6.30454 6.47977 6.96188 7.09564 7.23810 7.38171 7.72509 7.73733 7.99625 8.75775 9.38028 10.85202 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.008891 C = 0.006142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.862690 B = 3148.476522 C = 4557.585398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.223 3.777 3 C -0.052 4.052 4 C 0.135 3.865 5 N -0.973 5.973 6 C 0.238 3.762 7 C -0.546 4.546 8 H 0.064 0.936 9 C 0.068 3.932 10 N -0.886 5.886 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.282 1.282 14 H -0.282 1.282 15 S 2.716 3.284 16 O -0.961 6.961 17 O -0.934 6.934 18 C -0.572 4.572 19 C -0.070 4.070 20 C -0.234 4.234 21 C -0.004 4.004 22 O -0.129 6.129 23 H 0.113 0.887 24 H 0.120 0.880 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.265 0.735 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.056 -8.722 3.129 9.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.095 4.095 3 C -0.094 4.094 4 C 0.007 3.993 5 N -0.812 5.812 6 C 0.117 3.883 7 C -0.585 4.585 8 H 0.082 0.918 9 C -0.136 4.136 10 N -0.524 5.524 11 Si 0.718 3.282 12 H -0.197 1.197 13 H -0.208 1.208 14 H -0.208 1.208 15 S 2.799 3.201 16 O -0.951 6.951 17 O -0.924 6.924 18 C -0.700 4.700 19 C -0.091 4.091 20 C -0.254 4.254 21 C -0.075 4.075 22 O -0.022 6.022 23 H 0.131 0.869 24 H 0.138 0.862 25 H 0.114 0.886 26 H 0.098 0.902 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.185 0.815 31 H 0.172 0.828 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -2.634 -8.576 4.044 9.841 hybrid contribution 0.900 -0.643 -2.217 2.478 sum -1.734 -9.220 1.827 9.557 Atomic orbital electron populations 1.81181 1.13058 1.09354 1.09180 1.29060 0.95058 0.92678 0.92741 1.19884 0.81456 1.04811 1.03256 1.20972 0.80122 0.99112 0.99087 1.57481 1.13292 1.42188 1.68215 1.19438 0.92586 0.85716 0.90603 1.21564 1.37046 1.05834 0.94104 0.91828 1.24903 0.95030 0.94761 0.98865 1.69919 1.36517 1.10667 1.35293 0.86556 0.77999 0.78808 0.84817 1.19706 1.20832 1.20799 1.01737 0.73689 0.71899 0.72808 1.93542 1.66104 1.81500 1.53920 1.93628 1.40465 1.76103 1.82195 1.36098 1.00605 1.09326 1.23973 1.22011 0.98121 0.96586 0.92429 1.22067 0.99655 0.97974 1.05677 1.24545 0.95038 0.96272 0.91687 1.84164 1.42680 1.26855 1.48545 0.86886 0.86240 0.88570 0.90164 0.93245 0.92328 0.92486 0.81471 0.82772 0.77561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.31 18.54 42.16 0.78 -6.53 16 2 C 0.22 3.09 15.43 -20.76 -0.32 2.77 16 3 C -0.05 -0.64 6.02 -29.52 -0.18 -0.82 16 4 C 0.14 1.97 5.30 -4.04 -0.02 1.95 16 5 N -0.97 -17.07 2.77 -115.67 -0.32 -17.39 16 6 C 0.24 5.08 5.43 -5.19 -0.03 5.06 16 7 C -0.55 -13.08 9.38 -34.44 -0.32 -13.41 16 8 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -23.51 13.29 55.43 0.74 -22.78 16 11 Si 0.89 19.75 29.54 -169.99 -5.02 14.73 16 12 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 13 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 S 2.72 48.54 5.80 -107.50 -0.62 47.92 16 16 O -0.96 -17.37 16.99 -57.22 -0.97 -18.35 16 17 O -0.93 -18.87 16.38 -57.17 -0.94 -19.81 16 18 C -0.57 -10.02 7.36 29.42 0.22 -9.81 16 19 C -0.07 -1.20 10.63 -39.71 -0.42 -1.62 16 20 C -0.23 -3.28 10.91 -39.70 -0.43 -3.72 16 21 C 0.00 -0.05 12.09 29.42 0.36 0.31 16 22 O -0.13 -2.09 10.65 5.68 0.06 -2.02 16 23 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 24 H 0.12 1.32 8.14 -51.93 -0.42 0.90 16 25 H 0.10 1.40 8.11 -51.93 -0.42 0.98 16 26 H 0.08 1.08 7.61 -51.93 -0.40 0.68 16 27 H 0.05 1.06 8.11 -51.93 -0.42 0.64 16 28 H 0.06 1.37 6.91 -51.93 -0.36 1.01 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.17 2.79 8.06 -52.48 -0.42 2.37 16 31 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.21 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 310.61 15.07 4.68 4.68 Total: -1.00 -31.02 310.61 -6.12 -37.14 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -3.26 Total: 0.06 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.25 Total: -17.66 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 1.20 Total: -46.70 kcal Atomic # 8 Polarization: -38.33 SS G_CDS: -1.85 Total: -40.18 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Atomic # 16 Polarization: 48.54 SS G_CDS: -0.62 Total: 47.92 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.02 -6.12 -37.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188693510.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.708 kcal (2) G-P(sol) polarization free energy of solvation -31.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds