Wall clock time and date at job start Tue Mar 31 2020 05:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 C 1.53002 * 109.46796 * 221.55667 * 3 2 1 5 5 N 1.46904 * 109.46742 * 179.75357 * 4 3 2 6 6 C 1.46898 * 111.00074 * 297.06638 * 5 4 3 7 7 C 1.50703 * 109.47226 * 288.59589 * 6 5 4 8 8 H 1.08001 * 119.99552 * 0.92881 * 7 6 5 9 9 C 1.37877 * 120.00169 * 180.92837 * 7 6 5 10 10 N 1.31511 * 120.00124 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99652 * 359.97438 * 9 7 6 12 12 H 1.48494 * 109.47125 * 90.00364 * 11 9 7 13 13 H 1.48502 * 109.46699 * 210.00246 * 11 9 7 14 14 H 1.48493 * 109.47261 * 329.99987 * 11 9 7 15 15 C 1.46894 * 110.99956 * 61.02513 * 5 4 3 16 16 C 1.50693 * 109.47572 * 66.04252 * 15 5 4 17 17 C 1.33409 * 125.19988 * 89.99696 * 16 15 5 18 18 C 1.38476 * 114.91788 * 179.97438 * 17 16 15 19 19 Cl 1.73597 * 122.55023 * 179.97438 * 18 17 16 20 20 C 1.33438 * 114.89468 * 0.02562 * 18 17 16 21 21 S 1.75883 * 125.19647 * 269.69712 * 16 15 5 22 22 H 1.08994 * 109.47091 * 101.55387 * 3 2 1 23 23 H 1.09001 * 109.47352 * 341.55428 * 3 2 1 24 24 H 1.09001 * 109.47364 * 59.75195 * 4 3 2 25 25 H 1.08998 * 109.46882 * 299.74823 * 4 3 2 26 26 H 1.08999 * 109.47179 * 48.59918 * 6 5 4 27 27 H 1.09001 * 109.47133 * 168.59748 * 6 5 4 28 28 H 0.96993 * 120.00120 * 179.97438 * 10 9 7 29 29 H 1.09000 * 109.47249 * 186.04559 * 15 5 4 30 30 H 1.09000 * 109.47249 * 306.03823 * 15 5 4 31 31 H 1.08001 * 122.53727 * 0.02691 * 17 16 15 32 32 H 1.08003 * 125.19829 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.0803 0.9569 5 7 4.5865 1.0770 0.9614 6 6 5.1085 -0.2005 1.4647 7 6 4.8609 -0.2949 2.9482 8 1 4.3518 0.5067 3.4627 9 6 5.2841 -1.4045 3.6486 10 7 5.0675 -1.4871 4.9431 11 14 6.1639 -2.7912 2.7584 12 1 7.6266 -2.5355 2.7669 13 1 5.8821 -4.0775 3.4451 14 1 5.6821 -2.8632 1.3556 15 6 5.1176 1.3727 -0.3759 16 6 4.7634 2.7873 -0.7557 17 6 5.5121 3.8620 -0.5024 18 6 4.9814 5.0610 -0.9477 19 17 5.7892 6.5809 -0.7224 20 6 3.8013 4.9591 -1.5622 21 16 3.3032 3.2729 -1.6075 22 1 2.9712 0.2066 -1.0068 23 1 2.9718 -0.9740 0.3252 24 1 2.7505 0.8768 1.9630 25 1 2.7573 2.0555 0.6292 26 1 4.6039 -1.0237 0.9589 27 1 6.1797 -0.2569 1.2709 28 1 5.3649 -2.2679 5.4358 29 1 6.2016 1.2587 -0.3697 30 1 4.6840 0.6827 -1.0998 31 1 6.4607 3.8013 0.0104 32 1 3.2399 5.7853 -1.9728 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194465910.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:22 Heat of formation + Delta-G solvation = 62.829373 kcal Electronic energy + Delta-G solvation = -17355.701429 eV Core-core repulsion = 14469.409979 eV Total energy + Delta-G solvation = -2886.291450 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.74140 -37.71186 -36.26729 -35.83580 -32.72174 -31.29002 -30.18991 -27.61564 -25.68749 -23.95844 -22.47630 -20.13006 -19.23205 -17.86714 -17.21638 -16.75986 -15.93787 -15.50235 -14.84341 -14.52080 -14.12713 -13.70720 -13.53401 -13.22785 -13.07792 -12.90938 -12.54619 -12.25493 -12.11275 -11.80007 -11.58309 -11.51426 -11.23816 -11.13918 -10.79722 -10.77627 -10.63848 -10.31800 -10.05680 -9.44910 -8.77992 -8.65625 -8.40959 -7.66357 -6.13579 -4.12558 0.81069 1.24760 1.67829 2.48380 2.54985 2.96457 2.99297 3.20754 3.26598 3.30230 4.14316 4.32331 4.61188 4.76731 5.03452 5.13840 5.17605 5.26056 5.32844 5.43312 5.56825 5.76531 5.88488 5.99553 6.11819 6.21311 6.42082 6.63955 6.71236 7.38971 7.59799 7.71762 7.80043 8.51396 8.96298 9.46278 10.99351 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.016021 B = 0.005134 C = 0.004223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.272627 B = 5452.629594 C = 6627.992287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.222 3.778 3 C -0.075 4.075 4 C 0.063 3.937 5 N -0.509 5.509 6 C 0.156 3.844 7 C -0.512 4.512 8 H 0.083 0.917 9 C 0.071 3.929 10 N -0.896 5.896 11 Si 0.871 3.129 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.267 1.267 15 C 0.109 3.891 16 C -0.141 4.141 17 C -0.123 4.123 18 C -0.037 4.037 19 Cl -0.058 7.058 20 C -0.221 4.221 21 S 0.128 5.872 22 H 0.096 0.904 23 H 0.120 0.880 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.000 1.000 27 H 0.029 0.971 28 H 0.265 0.735 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.152 0.848 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.022 9.647 -15.154 17.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.068 4.068 5 N -0.231 5.231 6 C 0.031 3.969 7 C -0.550 4.550 8 H 0.101 0.899 9 C -0.131 4.131 10 N -0.534 5.534 11 Si 0.698 3.302 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.192 1.192 15 C -0.020 4.020 16 C -0.259 4.259 17 C -0.153 4.153 18 C -0.077 4.077 19 Cl -0.030 7.030 20 C -0.358 4.358 21 S 0.391 5.609 22 H 0.114 0.886 23 H 0.138 0.862 24 H 0.119 0.881 25 H 0.089 0.911 26 H 0.017 0.983 27 H 0.047 0.953 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.065 0.935 31 H 0.170 0.830 32 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -1.646 9.266 -15.217 17.892 hybrid contribution 1.960 -0.477 -0.275 2.036 sum 0.314 8.789 -15.492 17.814 Atomic orbital electron populations 1.81160 1.12983 1.09377 1.09271 1.29055 0.95070 0.92742 0.92745 1.20212 0.82225 1.05887 1.03393 1.22253 0.88535 0.95731 1.00253 1.62275 1.05445 1.36321 1.19074 1.20355 0.95091 0.84281 0.97216 1.20955 1.38531 1.05322 0.90240 0.89934 1.24883 0.95622 0.97926 0.94675 1.69877 1.46859 1.29728 1.06936 0.86936 0.80673 0.82331 0.80228 1.20094 1.21209 1.19165 1.20770 1.01471 0.88087 0.91710 1.24439 0.97362 1.00031 1.04035 1.19847 1.03038 0.89351 1.03099 1.19792 0.94950 0.88319 1.04589 1.98357 1.79128 1.29439 1.96083 1.25470 1.00064 1.01183 1.09042 1.84419 1.22133 0.98349 1.56037 0.88583 0.86234 0.88054 0.91070 0.98293 0.95284 0.92527 0.88483 0.93543 0.82993 0.81266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.75 18.54 42.15 0.78 -6.97 16 2 C 0.22 3.34 15.43 -20.76 -0.32 3.02 16 3 C -0.08 -1.01 5.06 -29.52 -0.15 -1.16 16 4 C 0.06 0.98 4.92 -3.82 -0.02 0.96 16 5 N -0.51 -8.60 4.65 -237.52 -1.10 -9.70 16 6 C 0.16 3.13 3.66 -4.98 -0.02 3.12 16 7 C -0.51 -13.02 9.11 -34.44 -0.31 -13.34 16 8 H 0.08 2.34 7.70 -52.49 -0.40 1.94 16 9 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -25.98 13.96 55.43 0.77 -25.21 16 11 Si 0.87 19.59 27.45 -169.99 -4.67 14.93 16 12 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 13 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 14 H -0.27 -5.56 6.57 56.52 0.37 -5.18 16 15 C 0.11 1.44 5.22 -4.98 -0.03 1.41 16 16 C -0.14 -1.75 5.24 -36.00 -0.19 -1.93 16 17 C -0.12 -1.54 9.94 -41.18 -0.41 -1.95 16 18 C -0.04 -0.43 6.27 -41.17 -0.26 -0.69 16 19 Cl -0.06 -0.65 29.11 -51.86 -1.51 -2.16 16 20 C -0.22 -2.37 11.08 29.05 0.32 -2.05 16 21 S 0.13 1.40 21.90 -107.50 -2.35 -0.95 16 22 H 0.10 1.04 6.31 -51.93 -0.33 0.72 16 23 H 0.12 1.68 6.23 -51.93 -0.32 1.36 16 24 H 0.10 1.85 7.16 -51.93 -0.37 1.48 16 25 H 0.07 1.03 6.03 -51.93 -0.31 0.71 16 26 H 0.00 -0.01 5.01 -51.93 -0.26 -0.27 16 27 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.10 1.22 7.87 -51.93 -0.41 0.81 16 30 H 0.05 0.53 6.04 -51.93 -0.31 0.22 16 31 H 0.15 1.85 8.06 -52.49 -0.42 1.42 16 32 H 0.17 1.47 8.06 -52.48 -0.42 1.04 16 LS Contribution 301.76 15.07 4.55 4.55 Total: -1.00 -28.74 301.76 -8.12 -36.86 By element: Atomic # 1 Polarization: 2.57 SS G_CDS: -3.11 Total: -0.54 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -1.48 Total: -10.81 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: 0.45 Total: -41.88 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -4.67 Total: 14.93 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.35 Total: -0.95 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.51 Total: -2.16 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.74 -8.12 -36.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194465910.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.689 kcal (2) G-P(sol) polarization free energy of solvation -28.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds