Wall clock time and date at job start Tue Mar 31 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47156 * 2 1 4 4 C 1.46503 * 119.99941 * 91.59464 * 3 2 1 5 5 C 1.50693 * 109.47255 * 89.99990 * 4 3 2 6 6 H 1.08004 * 119.99952 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99867 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00180 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99991 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47079 * 89.99398 * 9 7 5 11 11 H 1.48497 * 109.47260 * 209.99701 * 9 7 5 12 12 H 1.48503 * 109.47246 * 330.00091 * 9 7 5 13 13 C 1.34776 * 120.00207 * 271.58882 * 3 2 1 14 14 O 1.21693 * 120.00474 * 185.82316 * 13 3 2 15 15 C 1.46590 * 119.99806 * 5.82837 * 13 3 2 16 16 C 1.36647 * 125.45992 * 186.90828 * 15 13 3 17 17 C 1.37469 * 113.29999 * 179.97438 * 16 15 13 18 18 C 1.33815 * 115.09723 * 0.02562 * 17 16 15 19 19 N 1.48030 * 124.52015 * 180.02562 * 18 17 16 20 20 O 1.21802 * 120.00081 * 359.97438 * 19 18 17 21 21 O 1.21802 * 120.00088 * 180.02562 * 19 18 17 22 22 S 1.70608 * 110.95804 * 359.74490 * 18 17 16 23 23 H 1.09000 * 109.47571 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47304 * 300.00253 * 1 2 3 25 25 H 1.09005 * 109.47531 * 60.00044 * 1 2 3 26 26 H 1.08998 * 109.46871 * 239.99954 * 2 1 3 27 27 H 1.08995 * 109.47110 * 120.00290 * 2 1 3 28 28 H 1.09002 * 109.46876 * 209.99808 * 4 3 2 29 29 H 1.08999 * 109.46958 * 329.99305 * 4 3 2 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 1.08000 * 123.34747 * 359.97438 * 16 15 13 32 32 H 1.07993 * 122.45011 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2957 2.0600 1.2683 5 6 3.7298 1.8194 1.6636 6 1 4.3705 1.2203 1.0334 7 6 4.2238 2.3631 2.8304 8 7 3.4436 3.0922 3.5980 9 14 6.0014 2.0643 3.3209 10 1 6.8587 3.1347 2.7513 11 1 6.1148 2.0744 4.8015 12 1 6.4438 0.7460 2.7995 13 6 2.2124 2.0273 -1.1667 14 8 2.7172 3.1346 -1.1725 15 6 1.8154 1.3963 -2.4289 16 6 2.0786 1.8860 -3.6772 17 6 1.5908 1.0910 -4.6871 18 6 0.9496 -0.0114 -4.2821 19 7 0.3438 -1.0110 -5.1906 20 8 0.4109 -0.8571 -6.3970 21 8 -0.2224 -1.9869 -4.7317 22 16 0.9299 -0.1153 -2.5793 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.1256 3.1304 1.1522 29 1 1.6350 1.6689 2.0419 30 1 3.7912 3.4750 4.4187 31 1 2.6165 2.8059 -3.8528 32 1 1.7153 1.3386 -5.7308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000221057479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:50 Heat of formation + Delta-G solvation = 4.776643 kcal Electronic energy + Delta-G solvation = -19866.255740 eV Core-core repulsion = 16536.737770 eV Total energy + Delta-G solvation = -3329.517970 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.17954 -39.71158 -38.01402 -36.65433 -35.76164 -33.09543 -31.17108 -30.51861 -28.12211 -26.50712 -24.22242 -23.48635 -23.15160 -20.74723 -20.48394 -18.93147 -17.86560 -17.72714 -17.58705 -16.61779 -16.23821 -15.45633 -14.91312 -14.65195 -14.30776 -14.17670 -13.57073 -13.26303 -12.76435 -12.59334 -12.29105 -12.02190 -11.74680 -11.59967 -11.50852 -11.35109 -11.31742 -11.15736 -10.93945 -10.73438 -10.30402 -9.88206 -9.60077 -9.54268 -8.82974 -8.58819 -8.07798 -6.20588 -4.26438 -0.63148 0.48359 0.87399 1.24152 1.53276 1.99678 3.22295 3.24479 3.29092 3.34367 3.41064 4.30954 4.43947 4.53590 4.76220 4.83115 5.10140 5.14864 5.26672 5.30947 5.51200 5.66935 5.73611 5.84519 6.09701 6.13180 6.71353 7.09787 7.20687 7.45587 7.73798 7.92291 8.01179 8.47336 8.77500 9.39493 10.87631 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.032052 B = 0.004307 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.381205 B = 6498.783715 C = 6779.791613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.090 3.910 3 N -0.584 5.584 4 C 0.248 3.752 5 C -0.533 4.533 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.892 5.892 9 Si 0.900 3.100 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.274 1.274 13 C 0.568 3.432 14 O -0.507 6.507 15 C -0.201 4.201 16 C -0.086 4.086 17 C -0.054 4.054 18 C -0.250 4.250 19 N 0.064 4.936 20 O -0.154 6.154 21 O -0.164 6.164 22 S 0.372 5.628 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.058 0.942 26 H 0.065 0.935 27 H 0.110 0.890 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.266 0.734 31 H 0.174 0.826 32 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.487 -7.066 -11.082 14.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.036 4.036 3 N -0.315 5.315 4 C 0.130 3.870 5 C -0.572 4.572 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.727 3.273 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.199 1.199 13 C 0.352 3.648 14 O -0.384 6.384 15 C -0.325 4.325 16 C -0.118 4.118 17 C -0.091 4.091 18 C -0.450 4.450 19 N 0.583 4.417 20 O -0.371 6.371 21 O -0.377 6.377 22 S 0.645 5.355 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.128 0.872 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.191 0.809 32 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.556 -6.998 -9.435 13.453 hybrid contribution 1.428 0.600 -1.162 1.936 sum -5.128 -6.398 -10.597 13.399 Atomic orbital electron populations 1.22509 0.95742 1.03262 1.02982 1.21813 0.94419 0.84520 1.02851 1.48302 1.62619 1.12723 1.07847 1.19456 0.96766 0.93786 0.77040 1.21365 0.96105 1.33099 1.06631 0.92254 1.24919 0.98154 0.94679 0.96090 1.69914 1.35934 1.33451 1.13765 0.86466 0.84478 0.78751 0.77564 1.20430 1.21018 1.19855 1.16828 0.80436 0.85865 0.81669 1.90866 1.42576 1.19297 1.85633 1.25965 1.06032 1.00411 1.00097 1.20641 1.00739 1.01735 0.88682 1.20105 0.94532 0.91172 1.03264 1.26858 1.16458 0.99876 1.01855 1.42585 0.98155 1.00062 1.00867 1.94539 1.63695 1.82208 0.96673 1.94561 1.42928 1.19584 1.80662 1.84803 1.46390 1.16551 0.87806 0.90384 0.90214 0.92375 0.91802 0.87209 0.93406 0.94144 0.92480 0.80908 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 8.97 37.16 0.33 -1.73 16 2 C 0.09 1.26 5.62 -4.05 -0.02 1.23 16 3 N -0.58 -11.05 2.46 -176.65 -0.43 -11.49 16 4 C 0.25 5.87 5.11 -5.20 -0.03 5.84 16 5 C -0.53 -14.08 9.39 -34.44 -0.32 -14.40 16 6 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -25.02 13.29 55.43 0.74 -24.29 16 9 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 C 0.57 10.82 7.61 -12.89 -0.10 10.72 16 14 O -0.51 -11.71 16.49 5.20 0.09 -11.62 16 15 C -0.20 -2.91 6.20 -36.79 -0.23 -3.14 16 16 C -0.09 -1.08 10.02 -40.44 -0.41 -1.48 16 17 C -0.05 -0.61 9.75 -41.41 -0.40 -1.01 16 18 C -0.25 -3.16 7.28 -11.18 -0.08 -3.24 16 19 N 0.06 0.90 4.45 32.56 0.15 1.04 16 20 O -0.15 -2.20 18.89 -29.46 -0.56 -2.76 16 21 O -0.16 -2.36 18.99 -29.46 -0.56 -2.92 16 22 S 0.37 4.36 14.88 -107.50 -1.60 2.76 16 23 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 25 H 0.06 0.64 5.84 -37.99 -0.22 0.41 16 26 H 0.06 0.79 4.66 -23.99 -0.11 0.68 16 27 H 0.11 1.53 8.06 -51.93 -0.42 1.11 16 28 H 0.05 1.28 7.51 -51.93 -0.39 0.89 16 29 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.17 1.99 8.06 -52.49 -0.42 1.56 16 32 H 0.16 1.50 7.97 -52.49 -0.42 1.08 16 LS Contribution 298.29 15.07 4.50 4.50 Total: -1.00 -30.74 298.29 -6.85 -37.60 By element: Atomic # 1 Polarization: -0.25 SS G_CDS: -2.79 Total: -3.04 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -1.35 Total: -5.57 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: 0.45 Total: -34.74 kcal Atomic # 8 Polarization: -16.27 SS G_CDS: -1.03 Total: -17.30 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 4.36 SS G_CDS: -1.60 Total: 2.76 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.74 -6.85 -37.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221057479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.374 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds