Wall clock time and date at job start Tue Mar 31 2020 06:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47156 * 2 1 4 4 C 1.46503 * 119.99941 * 91.59464 * 3 2 1 5 5 C 1.50693 * 109.47255 * 89.99990 * 4 3 2 6 6 H 1.08004 * 119.99952 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99867 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00180 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99991 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47079 * 89.99398 * 9 7 5 11 11 H 1.48497 * 109.47260 * 209.99701 * 9 7 5 12 12 H 1.48503 * 109.47246 * 330.00091 * 9 7 5 13 13 C 1.34776 * 120.00207 * 271.58882 * 3 2 1 14 14 O 1.21693 * 120.00474 * 185.82316 * 13 3 2 15 15 C 1.46590 * 119.99806 * 5.82837 * 13 3 2 16 16 C 1.36647 * 125.45992 * 186.90828 * 15 13 3 17 17 C 1.37469 * 113.29999 * 179.97438 * 16 15 13 18 18 C 1.33815 * 115.09723 * 0.02562 * 17 16 15 19 19 N 1.48030 * 124.52015 * 180.02562 * 18 17 16 20 20 O 1.21802 * 120.00081 * 359.97438 * 19 18 17 21 21 O 1.21802 * 120.00088 * 180.02562 * 19 18 17 22 22 S 1.70608 * 110.95804 * 359.74490 * 18 17 16 23 23 H 1.09000 * 109.47571 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47304 * 300.00253 * 1 2 3 25 25 H 1.09005 * 109.47531 * 60.00044 * 1 2 3 26 26 H 1.08998 * 109.46871 * 239.99954 * 2 1 3 27 27 H 1.08995 * 109.47110 * 120.00290 * 2 1 3 28 28 H 1.09002 * 109.46876 * 209.99808 * 4 3 2 29 29 H 1.08999 * 109.46958 * 329.99305 * 4 3 2 30 30 H 0.97000 * 119.99899 * 180.02562 * 8 7 5 31 31 H 1.08000 * 123.34747 * 359.97438 * 16 15 13 32 32 H 1.07993 * 122.45011 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2957 2.0600 1.2683 5 6 3.7298 1.8194 1.6636 6 1 4.3705 1.2203 1.0334 7 6 4.2238 2.3631 2.8304 8 7 3.4436 3.0922 3.5980 9 14 6.0014 2.0643 3.3209 10 1 6.8587 3.1347 2.7513 11 1 6.1148 2.0744 4.8015 12 1 6.4438 0.7460 2.7995 13 6 2.2124 2.0273 -1.1667 14 8 2.7172 3.1346 -1.1725 15 6 1.8154 1.3963 -2.4289 16 6 2.0786 1.8860 -3.6772 17 6 1.5908 1.0910 -4.6871 18 6 0.9496 -0.0114 -4.2821 19 7 0.3438 -1.0110 -5.1906 20 8 0.4109 -0.8571 -6.3970 21 8 -0.2224 -1.9869 -4.7317 22 16 0.9299 -0.1153 -2.5793 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 2.1256 3.1304 1.1522 29 1 1.6350 1.6689 2.0419 30 1 3.7912 3.4750 4.4187 31 1 2.6165 2.8059 -3.8528 32 1 1.7153 1.3386 -5.7308 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221057479.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:50 Heat of formation + Delta-G solvation = -13.586134 kcal Electronic energy + Delta-G solvation = -19867.052010 eV Core-core repulsion = 16536.737770 eV Total energy + Delta-G solvation = -3330.314240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.066 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.25243 -41.13625 -39.11424 -37.74641 -37.24067 -35.03564 -32.47004 -31.73899 -29.67061 -27.91651 -25.52723 -24.86229 -24.44871 -22.01449 -21.57978 -20.09988 -19.11107 -18.87238 -18.78902 -18.56954 -17.41668 -16.95289 -16.36155 -16.20252 -15.51758 -15.45661 -14.74888 -14.55428 -14.18908 -13.79934 -13.76452 -13.41422 -13.13353 -12.86490 -12.76712 -12.67002 -12.62632 -12.44603 -12.41459 -12.23241 -11.99047 -11.76600 -11.17148 -10.67845 -10.65863 -9.80935 -9.66810 -8.25610 -6.39359 -1.71098 -0.56915 -0.22626 0.22464 0.48949 0.96607 1.38009 1.40348 1.49395 1.87780 1.99445 2.38370 3.05445 3.21567 3.54187 3.68617 3.86425 4.05055 4.28253 4.32922 4.54872 4.74266 4.77431 4.79049 4.95096 5.02935 5.13610 5.23831 5.41549 5.71002 5.99556 6.34628 6.39462 6.67699 7.00669 7.31625 8.81860 Molecular weight = 284.07amu Principal moments of inertia in cm(-1) A = 0.032052 B = 0.004307 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.381205 B = 6498.783715 C = 6779.791613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.082 3.918 3 N -0.590 5.590 4 C 0.263 3.737 5 C -0.546 4.546 6 H 0.054 0.946 7 C 0.014 3.986 8 N -0.924 5.924 9 Si 0.963 3.037 10 H -0.282 1.282 11 H -0.276 1.276 12 H -0.263 1.263 13 C 0.566 3.434 14 O -0.563 6.563 15 C -0.233 4.233 16 C -0.070 4.070 17 C -0.044 4.044 18 C -0.257 4.257 19 N 0.063 4.937 20 O -0.158 6.158 21 O -0.171 6.171 22 S 0.430 5.570 23 H 0.115 0.885 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.007 0.993 29 H 0.039 0.961 30 H 0.268 0.732 31 H 0.180 0.820 32 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.570 -8.854 -12.269 16.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.042 4.042 3 N -0.320 5.320 4 C 0.142 3.858 5 C -0.584 4.584 6 H 0.072 0.928 7 C -0.185 4.185 8 N -0.564 5.564 9 Si 0.788 3.212 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.187 1.187 13 C 0.352 3.648 14 O -0.444 6.444 15 C -0.357 4.357 16 C -0.103 4.103 17 C -0.081 4.081 18 C -0.458 4.458 19 N 0.581 4.419 20 O -0.375 6.375 21 O -0.384 6.384 22 S 0.703 5.297 23 H 0.134 0.866 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.102 0.898 27 H 0.128 0.872 28 H 0.025 0.975 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.197 0.803 32 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -6.676 -8.858 -10.627 15.361 hybrid contribution 1.397 1.126 -0.862 1.991 sum -5.279 -7.732 -11.490 14.821 Atomic orbital electron populations 1.22509 0.93293 1.05586 1.02690 1.22140 0.96422 0.81753 1.03927 1.48241 1.62759 1.14548 1.06485 1.18913 0.95676 0.91968 0.79202 1.21657 0.97306 1.32851 1.06626 0.92753 1.25750 1.02204 0.94416 0.96179 1.70019 1.37767 1.34362 1.14233 0.85483 0.79406 0.78795 0.77551 1.20793 1.20072 1.18698 1.17308 0.79290 0.85297 0.82886 1.90821 1.45086 1.21688 1.86757 1.25442 1.08947 1.02853 0.98419 1.20792 0.99573 1.01769 0.88143 1.20252 0.93394 0.90202 1.04210 1.27030 1.16536 1.00011 1.02204 1.42700 0.98097 1.00163 1.00961 1.94541 1.63751 1.82261 0.96929 1.94562 1.43226 1.19936 1.80635 1.84478 1.44539 1.13761 0.86891 0.86646 0.91177 0.92047 0.89828 0.87211 0.97539 0.94317 0.92290 0.80256 0.79312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.67 8.97 71.98 0.65 -3.02 16 2 C 0.08 2.18 5.62 86.38 0.49 2.67 16 3 N -0.59 -22.70 2.46 -831.01 -2.04 -24.74 16 4 C 0.26 12.95 5.11 85.63 0.44 13.39 16 5 C -0.55 -29.46 9.39 25.60 0.24 -29.22 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.78 5.46 84.66 0.46 1.24 16 8 N -0.92 -52.98 13.29 21.45 0.28 -52.69 16 9 Si 0.96 42.84 29.54 68.60 2.03 44.87 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 12 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 13 C 0.57 21.93 7.61 86.42 0.66 22.59 16 14 O -0.56 -27.15 16.49 -4.33 -0.07 -27.22 16 15 C -0.23 -6.47 6.20 24.08 0.15 -6.32 16 16 C -0.07 -1.62 10.02 21.72 0.22 -1.40 16 17 C -0.04 -0.86 9.75 21.08 0.21 -0.66 16 18 C -0.26 -5.72 7.28 80.92 0.59 -5.13 16 19 N 0.06 1.58 4.45 -50.90 -0.23 1.35 16 20 O -0.16 -4.10 18.89 18.88 0.36 -3.74 16 21 O -0.17 -4.47 18.99 18.88 0.36 -4.11 16 22 S 0.43 8.91 14.88 -56.49 -0.84 8.07 16 23 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.06 1.21 5.84 -11.25 -0.07 1.14 16 26 H 0.08 1.88 4.66 -20.16 -0.09 1.78 16 27 H 0.11 2.93 8.06 -2.39 -0.02 2.92 16 28 H 0.01 0.37 7.51 -2.39 -0.02 0.35 16 29 H 0.04 1.89 8.07 -2.39 -0.02 1.87 16 30 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.18 3.91 8.06 -2.91 -0.02 3.88 16 32 H 0.19 2.77 7.97 -2.91 -0.02 2.75 16 Total: -1.00 -68.14 298.29 4.96 -63.17 By element: Atomic # 1 Polarization: -0.12 SS G_CDS: 1.03 Total: 0.91 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.09 Total: -5.86 kcal Atomic # 7 Polarization: -74.10 SS G_CDS: -1.98 Total: -76.08 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: 0.64 Total: -35.07 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: 8.91 SS G_CDS: -0.84 Total: 8.07 kcal Total: -68.14 4.96 -63.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221057479.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.589 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds