Wall clock time and date at job start Tue Mar 31 2020 05:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38128 * 120.03267 * 2 1 4 4 C 1.38359 * 120.06216 * 179.97438 * 3 2 1 5 5 Cl 1.73602 * 119.94111 * 179.97438 * 4 3 2 6 6 C 1.38406 * 120.11552 * 0.02562 * 4 3 2 7 7 C 1.38083 * 120.05789 * 359.97438 * 6 4 3 8 8 C 1.38855 * 120.02942 * 179.97438 * 2 1 3 9 9 N 1.39944 * 120.05836 * 359.74181 * 8 2 1 10 10 C 1.34776 * 119.99877 * 132.84736 * 9 8 2 11 11 S 1.71202 * 119.99924 * 4.31364 * 10 9 8 12 12 N 1.34770 * 120.00117 * 184.30531 * 10 9 8 13 13 C 1.46505 * 120.00414 * 180.02562 * 12 10 9 14 14 C 1.50700 * 109.47256 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00096 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99756 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00236 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99883 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47231 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47360 * 120.00436 * 18 16 14 21 21 H 1.48505 * 109.47123 * 239.99906 * 18 16 14 22 22 H 1.08996 * 109.47238 * 270.02035 * 1 2 3 23 23 H 1.09002 * 109.46755 * 30.02513 * 1 2 3 24 24 H 1.08996 * 109.46758 * 150.01826 * 1 2 3 25 25 H 1.08008 * 119.96915 * 359.95727 * 3 2 1 26 26 H 1.08004 * 119.96710 * 180.02562 * 6 4 3 27 27 H 1.08004 * 120.02715 * 180.02562 * 7 6 4 28 28 H 0.97003 * 119.99928 * 312.85352 * 9 8 2 29 29 H 0.97001 * 120.00348 * 0.02562 * 12 10 9 30 30 H 1.09005 * 109.46556 * 300.00370 * 13 12 10 31 31 H 1.09003 * 109.47039 * 59.99769 * 13 12 10 32 32 H 0.97000 * 120.00037 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1958 0.0000 4 6 3.5819 1.1965 0.0005 5 17 4.4476 2.7013 -0.0001 6 6 4.2770 -0.0003 0.0005 7 6 3.5908 -1.1986 0.0005 8 6 2.2019 -1.2022 0.0005 9 7 1.5040 -2.4152 0.0065 10 6 1.8527 -3.3974 -0.8479 11 16 3.2174 -3.2041 -1.8634 12 7 1.1271 -4.5318 -0.9029 13 6 1.5064 -5.5998 -1.8313 14 6 0.5404 -6.7487 -1.6971 15 1 -0.2743 -6.6895 -0.9905 16 6 0.6968 -7.8753 -2.4762 17 7 1.6891 -7.9477 -3.3362 18 14 -0.5010 -9.2991 -2.3104 19 1 -1.5203 -8.9712 -1.2815 20 1 -1.1722 -9.5358 -3.6137 21 1 0.2371 -10.5222 -1.9045 22 1 -0.3633 0.0004 1.0276 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3633 -0.8901 -0.5135 25 1 1.6583 2.1312 -0.0007 26 1 5.3570 0.0030 0.0014 27 1 4.1337 -2.1323 0.0010 28 1 0.7693 -2.5490 0.6256 29 1 0.3537 -4.6413 -0.3277 30 1 1.4791 -5.2199 -2.8526 31 1 2.5144 -5.9429 -1.5981 32 1 1.7993 -8.7405 -3.8841 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000242703095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:38 Heat of formation + Delta-G solvation = 28.434613 kcal Electronic energy + Delta-G solvation = -17001.822131 eV Core-core repulsion = 14114.039212 eV Total energy + Delta-G solvation = -2887.782919 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.22142 -37.98849 -36.55067 -34.88509 -32.93311 -32.64931 -29.71899 -27.63897 -26.81347 -24.14936 -22.80541 -22.07143 -21.49799 -18.48860 -17.99382 -16.37109 -16.20826 -15.76485 -15.46556 -14.87055 -14.26763 -14.12592 -13.88358 -13.60288 -13.29100 -12.89712 -12.76109 -12.27896 -12.25039 -11.87838 -11.46128 -11.25131 -11.07269 -10.96958 -10.85151 -10.63494 -10.43143 -9.63157 -9.41476 -8.90551 -8.66790 -8.09544 -7.30043 -6.61045 -6.30930 -4.42429 0.97040 1.32661 1.93151 2.09633 2.42305 3.00917 3.14045 3.21785 3.23838 3.60853 4.02119 4.25117 4.63959 4.77561 5.04390 5.04643 5.20591 5.36472 5.39236 5.49348 5.75420 5.93649 6.04603 6.21929 6.27225 6.47559 6.58318 6.83935 7.19796 7.27457 7.31572 7.48763 7.74500 8.05277 8.61559 9.23916 10.77241 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.040896 B = 0.003383 C = 0.003186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.504452 B = 8275.537326 C = 8785.845444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.084 4.084 3 C -0.113 4.113 4 C -0.030 4.030 5 Cl -0.080 7.080 6 C -0.112 4.112 7 C -0.050 4.050 8 C 0.147 3.853 9 N -0.651 5.651 10 C 0.545 3.455 11 S -0.641 6.641 12 N -0.641 5.641 13 C 0.249 3.751 14 C -0.559 4.559 15 H 0.063 0.937 16 C 0.070 3.930 17 N -0.874 5.874 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.280 1.280 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.132 0.868 26 H 0.135 0.865 27 H 0.157 0.843 28 H 0.402 0.598 29 H 0.391 0.609 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.794 16.506 10.259 19.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.087 4.087 3 C -0.133 4.133 4 C -0.057 4.057 5 Cl -0.051 7.051 6 C -0.133 4.133 7 C -0.074 4.074 8 C 0.053 3.947 9 N -0.280 5.280 10 C 0.185 3.815 11 S -0.512 6.512 12 N -0.261 5.261 13 C 0.129 3.871 14 C -0.597 4.597 15 H 0.081 0.919 16 C -0.136 4.136 17 N -0.510 5.510 18 Si 0.733 3.267 19 H -0.197 1.197 20 H -0.206 1.206 21 H -0.206 1.206 22 H 0.090 0.910 23 H 0.092 0.908 24 H 0.086 0.914 25 H 0.150 0.850 26 H 0.153 0.847 27 H 0.174 0.826 28 H 0.240 0.760 29 H 0.227 0.773 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.703 16.388 9.245 18.829 hybrid contribution -1.932 -0.931 0.939 2.341 sum -2.635 15.457 10.184 18.697 Atomic orbital electron populations 1.20747 0.90557 1.03491 1.02334 1.19622 0.96164 0.91153 1.01804 1.20549 0.91780 0.97677 1.03279 1.20897 0.92295 0.86837 1.05687 1.98352 1.77058 1.32698 1.97026 1.20857 1.00517 0.89901 1.02058 1.21524 0.92698 0.99362 0.93770 1.17224 0.91164 0.83162 1.03187 1.42117 1.36055 1.12622 1.37249 1.22383 0.91252 0.82058 0.85850 1.93251 1.20334 1.88587 1.48998 1.46082 1.26635 1.14556 1.38870 1.19763 0.97689 0.81513 0.88132 1.21149 1.13422 1.01015 1.24148 0.91905 1.24904 0.95690 0.98438 0.94529 1.69987 1.29319 1.29201 1.22463 0.86324 0.80532 0.81683 0.78163 1.19710 1.20589 1.20577 0.90971 0.90847 0.91450 0.84970 0.84722 0.82607 0.75983 0.77335 0.92916 0.92893 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.59 36.00 0.35 -0.66 16 2 C -0.08 -0.97 5.90 -104.43 -0.62 -1.58 16 3 C -0.11 -1.25 9.48 -39.58 -0.38 -1.62 16 4 C -0.03 -0.36 6.32 -39.47 -0.25 -0.61 16 5 Cl -0.08 -0.86 28.95 -51.86 -1.50 -2.36 16 6 C -0.11 -1.43 9.82 -39.58 -0.39 -1.82 16 7 C -0.05 -0.73 7.89 -39.40 -0.31 -1.04 16 8 C 0.15 1.99 5.85 -83.68 -0.49 1.50 16 9 N -0.65 -8.73 4.43 -11.39 -0.05 -8.78 16 10 C 0.55 9.81 7.85 -86.92 -0.68 9.13 16 11 S -0.64 -14.25 25.00 -107.50 -2.69 -16.94 16 12 N -0.64 -11.94 5.55 -63.21 -0.35 -12.29 16 13 C 0.25 6.03 4.88 -5.19 -0.03 6.00 16 14 C -0.56 -14.13 9.28 -34.44 -0.32 -14.45 16 15 H 0.06 1.48 7.60 -52.49 -0.40 1.08 16 16 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 17 N -0.87 -24.61 13.29 55.43 0.74 -23.87 16 18 Si 0.91 19.90 29.54 -169.99 -5.02 14.88 16 19 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 24 H 0.07 0.64 7.39 -51.93 -0.38 0.26 16 25 H 0.13 1.19 8.06 -52.48 -0.42 0.76 16 26 H 0.13 1.52 8.06 -52.48 -0.42 1.10 16 27 H 0.16 2.53 6.30 -49.60 -0.31 2.21 16 28 H 0.40 4.00 8.48 -40.82 -0.35 3.65 16 29 H 0.39 6.01 8.34 -40.82 -0.34 5.67 16 30 H 0.05 1.44 7.99 -51.93 -0.41 1.03 16 31 H 0.05 1.44 7.99 -51.93 -0.42 1.02 16 32 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -30.35 305.13 -10.92 -41.27 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -3.43 Total: 6.92 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.21 Total: -3.40 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.33 Total: -44.95 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: -14.25 SS G_CDS: -2.69 Total: -16.94 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.35 -10.92 -41.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242703095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.702 kcal (2) G-P(sol) polarization free energy of solvation -30.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds