Wall clock time and date at job start Tue Mar 31 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38140 * 120.02200 * 2 1 4 4 C 1.38236 * 120.08315 * 180.25480 * 3 2 1 5 5 C 1.38427 * 120.13101 * 359.44232 * 4 3 2 6 6 Cl 1.73601 * 119.98151 * 180.25622 * 5 4 3 7 7 C 1.38205 * 120.04421 * 0.27992 * 5 4 3 8 8 C 1.38867 * 120.02370 * 179.69857 * 2 1 3 9 9 N 1.39893 * 120.06462 * 0.02562 * 8 2 1 10 10 C 1.34770 * 120.00166 * 132.62966 * 9 8 2 11 11 S 1.71205 * 119.99915 * 4.31052 * 10 9 8 12 12 N 1.34770 * 120.00145 * 184.30742 * 10 9 8 13 13 C 1.46508 * 120.00190 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47071 * 180.02562 * 13 12 10 15 15 H 1.07997 * 120.00439 * 0.02562 * 14 13 12 16 16 C 1.37884 * 119.99761 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99734 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99936 * 0.02562 * 16 14 13 19 19 H 1.48498 * 109.47426 * 89.99329 * 18 16 14 20 20 H 1.48502 * 109.46970 * 209.99681 * 18 16 14 21 21 H 1.48501 * 109.47067 * 329.99549 * 18 16 14 22 22 H 1.08994 * 109.47499 * 270.30171 * 1 2 3 23 23 H 1.09004 * 109.46822 * 30.30057 * 1 2 3 24 24 H 1.09001 * 109.46873 * 150.29451 * 1 2 3 25 25 H 1.07999 * 119.95996 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.93409 * 179.72385 * 4 3 2 27 27 H 1.07999 * 120.04552 * 179.97438 * 7 5 4 28 28 H 0.96998 * 119.99764 * 312.63254 * 9 8 2 29 29 H 0.96995 * 120.00493 * 0.02562 * 12 10 9 30 30 H 1.09003 * 109.47053 * 300.00747 * 13 12 10 31 31 H 1.09008 * 109.46806 * 60.00169 * 13 12 10 32 32 H 0.97000 * 119.99328 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1961 0.0000 4 6 3.5805 1.1975 -0.0053 5 6 4.2767 0.0011 0.0010 6 17 6.0127 0.0075 0.0010 7 6 3.5907 -1.1986 0.0068 8 6 2.2019 -1.2023 0.0063 9 7 1.5043 -2.4149 0.0122 10 6 1.8537 -3.3975 -0.8415 11 16 3.2194 -3.2047 -1.8558 12 7 1.1282 -4.5319 -0.8966 13 6 1.5077 -5.5998 -1.8250 14 6 0.5417 -6.7487 -1.6910 15 1 -0.2736 -6.6892 -0.9854 16 6 0.6982 -7.8754 -2.4702 17 7 -0.1445 -8.8782 -2.3530 18 14 2.1081 -7.9780 -3.6914 19 1 3.2952 -8.5746 -3.0280 20 1 1.7056 -8.8261 -4.8420 21 1 2.4443 -6.6148 -4.1749 22 1 -0.3634 0.0054 1.0276 23 1 -0.3633 0.8873 -0.5185 24 1 -0.3633 -0.8926 -0.5093 25 1 1.6579 2.1312 -0.0004 26 1 4.1185 2.1341 -0.0098 27 1 4.1338 -2.1321 0.0113 28 1 0.7690 -2.5484 0.6306 29 1 0.3542 -4.6411 -0.3222 30 1 1.4808 -5.2200 -2.8463 31 1 2.5157 -5.9430 -1.5915 32 1 -0.0341 -9.6710 -2.9009 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000243281869.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:40 Heat of formation + Delta-G solvation = 32.470005 kcal Electronic energy + Delta-G solvation = -17150.115513 eV Core-core repulsion = 14262.507582 eV Total energy + Delta-G solvation = -2887.607931 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.30409 -38.08110 -36.49288 -35.08582 -32.80772 -32.56988 -30.13583 -28.13021 -26.78010 -24.26184 -22.60380 -22.10640 -21.47330 -18.64166 -18.12600 -16.68164 -16.03104 -15.87142 -15.51629 -14.84937 -14.37281 -14.32714 -13.98509 -13.65529 -13.59566 -12.95124 -12.74583 -12.54722 -12.35638 -11.70564 -11.49790 -11.23346 -11.10713 -10.90635 -10.83938 -10.76706 -10.06014 -9.74348 -9.57260 -8.86688 -8.71804 -8.28611 -7.46026 -6.77156 -6.35975 -4.42473 0.93044 1.22844 1.81185 2.14912 2.30860 2.89274 3.23249 3.30629 3.41756 3.53351 3.93226 4.24256 4.62973 4.73284 4.95269 4.99929 5.10663 5.27052 5.35409 5.46448 5.70014 5.77373 6.02153 6.16147 6.22295 6.29722 6.41422 6.71815 6.82899 6.88909 7.12290 7.21717 7.73209 8.12581 8.56674 9.20583 10.74945 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.024017 B = 0.004357 C = 0.003810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.537956 B = 6425.399462 C = 7346.826169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.089 4.089 3 C -0.110 4.110 4 C -0.107 4.107 5 C -0.036 4.036 6 Cl -0.071 7.071 7 C -0.054 4.054 8 C 0.150 3.850 9 N -0.647 5.647 10 C 0.548 3.452 11 S -0.644 6.644 12 N -0.635 5.635 13 C 0.221 3.779 14 C -0.559 4.559 15 H 0.079 0.921 16 C 0.085 3.915 17 N -0.886 5.886 18 Si 0.873 3.127 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.252 1.252 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.133 0.867 26 H 0.131 0.869 27 H 0.158 0.842 28 H 0.405 0.595 29 H 0.397 0.603 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 19.450 8.092 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.092 4.092 3 C -0.130 4.130 4 C -0.126 4.126 5 C -0.065 4.065 6 Cl -0.043 7.043 7 C -0.078 4.078 8 C 0.056 3.944 9 N -0.276 5.276 10 C 0.187 3.813 11 S -0.515 6.515 12 N -0.256 5.256 13 C 0.099 3.901 14 C -0.597 4.597 15 H 0.097 0.903 16 C -0.120 4.120 17 N -0.522 5.522 18 Si 0.698 3.302 19 H -0.195 1.195 20 H -0.207 1.207 21 H -0.176 1.176 22 H 0.091 0.909 23 H 0.092 0.908 24 H 0.085 0.915 25 H 0.151 0.849 26 H 0.149 0.851 27 H 0.175 0.825 28 H 0.243 0.757 29 H 0.234 0.766 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.435 19.133 7.170 20.719 hybrid contribution -0.649 -0.529 0.339 0.903 sum 2.786 18.604 7.509 20.255 Atomic orbital electron populations 1.20769 0.90711 1.03476 1.02361 1.19825 0.96321 0.91714 1.01340 1.20654 0.93153 0.97043 1.02120 1.21004 0.94137 0.96803 1.00671 1.20556 0.84644 0.94377 1.06931 1.98360 1.09949 1.98924 1.97019 1.21394 0.92887 0.98779 0.94700 1.16933 0.90360 0.83282 1.03844 1.42034 1.35874 1.12520 1.37169 1.22365 0.91047 0.82040 0.85808 1.93288 1.20309 1.88754 1.49109 1.45692 1.26954 1.14105 1.38850 1.20092 0.97687 0.83546 0.88732 1.20961 1.13749 0.99591 1.25351 0.90314 1.24710 0.96177 0.94764 0.96371 1.69863 1.36327 1.06209 1.39837 0.86851 0.82317 0.79880 0.81138 1.19521 1.20749 1.17587 0.90934 0.90817 0.91543 0.84947 0.85095 0.82471 0.75655 0.76621 0.93124 0.93570 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.59 36.01 0.35 -0.61 16 2 C -0.09 -0.96 5.90 -104.42 -0.62 -1.57 16 3 C -0.11 -1.06 9.70 -39.62 -0.38 -1.45 16 4 C -0.11 -1.13 9.83 -39.51 -0.39 -1.52 16 5 C -0.04 -0.47 6.32 -39.52 -0.25 -0.72 16 6 Cl -0.07 -0.90 28.95 -51.86 -1.50 -2.41 16 7 C -0.05 -0.79 7.66 -39.36 -0.30 -1.09 16 8 C 0.15 1.99 5.85 -83.71 -0.49 1.50 16 9 N -0.65 -8.43 4.43 -11.41 -0.05 -8.48 16 10 C 0.55 9.52 7.84 -86.93 -0.68 8.84 16 11 S -0.64 -13.78 25.00 -107.50 -2.69 -16.47 16 12 N -0.64 -11.45 5.55 -63.21 -0.35 -11.80 16 13 C 0.22 5.01 3.95 -5.19 -0.02 4.98 16 14 C -0.56 -14.40 9.83 -34.44 -0.34 -14.74 16 15 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 16 C 0.09 2.31 5.47 -17.82 -0.10 2.21 16 17 N -0.89 -25.36 13.96 55.43 0.77 -24.59 16 18 Si 0.87 20.73 27.47 -169.99 -4.67 16.07 16 19 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.25 -6.00 6.54 56.52 0.37 -5.63 16 22 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 23 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 24 H 0.07 0.61 7.39 -51.93 -0.38 0.22 16 25 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 26 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 27 H 0.16 2.64 6.31 -49.74 -0.31 2.33 16 28 H 0.41 3.89 8.47 -40.82 -0.35 3.54 16 29 H 0.40 6.06 8.34 -40.82 -0.34 5.72 16 30 H 0.05 1.24 7.05 -51.93 -0.37 0.87 16 31 H 0.05 1.11 7.42 -51.92 -0.39 0.72 16 32 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 301.53 15.07 4.54 4.54 Total: -1.00 -31.22 301.53 -10.57 -41.78 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -3.40 Total: 5.52 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.22 Total: -4.17 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 0.37 Total: -44.88 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.07 kcal Atomic # 16 Polarization: -13.78 SS G_CDS: -2.69 Total: -16.47 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.22 -10.57 -41.78 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243281869.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.252 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds