Wall clock time and date at job start Tue Mar 31 2020 05:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00190 * 2 1 4 4 H 1.48496 * 109.47001 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47188 * 299.99622 * 3 2 1 6 6 H 1.48497 * 109.47104 * 59.99725 * 3 2 1 7 7 C 1.37875 * 119.99609 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99744 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00213 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47138 * 179.97438 * 9 7 2 11 11 C 1.34777 * 120.00065 * 179.97438 * 10 9 7 12 12 S 1.71198 * 119.99817 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00128 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99828 * 180.27942 * 13 11 10 15 15 C 1.50700 * 109.46769 * 179.72341 * 14 13 11 16 16 C 1.38260 * 119.98994 * 269.71626 * 15 14 13 17 17 C 1.38227 * 120.02461 * 179.76734 * 16 15 14 18 18 C 1.38230 * 120.01196 * 0.51941 * 17 16 15 19 19 C 1.38332 * 119.98896 * 359.73821 * 18 17 16 20 20 Cl 1.73595 * 120.01515 * 180.02562 * 19 18 17 21 21 C 1.38192 * 119.99589 * 90.00027 * 15 14 13 22 22 H 0.96997 * 119.99506 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47088 * 59.99370 * 9 7 2 24 24 H 1.09006 * 109.46998 * 299.99569 * 9 7 2 25 25 H 0.97000 * 120.00386 * 0.02562 * 10 9 7 26 26 H 0.97001 * 119.99727 * 359.97438 * 13 11 10 27 27 H 1.09004 * 109.46963 * 299.72135 * 14 13 11 28 28 H 1.08994 * 109.47567 * 59.72287 * 14 13 11 29 29 H 1.08001 * 119.99385 * 0.02562 * 16 15 14 30 30 H 1.08000 * 119.99058 * 180.25626 * 17 16 15 31 31 H 1.08002 * 120.00558 * 179.76473 * 18 17 16 32 32 H 1.08001 * 120.00526 * 359.95731 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 16 0.0704 -5.1961 0.0011 13 7 2.6294 -5.9079 0.0016 14 6 2.1410 -7.2890 -0.0040 15 6 3.3131 -8.2362 -0.0090 16 6 3.8459 -8.6700 -1.2088 17 6 4.9241 -9.5350 -1.2143 18 6 5.4633 -9.9753 -0.0200 19 6 4.9272 -9.5458 1.1807 20 17 5.6043 -10.0978 2.6808 21 6 3.8513 -8.6756 1.1855 22 1 -0.4849 0.8401 -0.0004 23 1 0.6245 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 3.1566 -3.4356 0.0009 26 1 3.5831 -5.7306 0.0012 27 1 1.5361 -7.4641 0.8857 28 1 1.5347 -7.4565 -0.8942 29 1 3.4224 -8.3296 -2.1422 30 1 5.3425 -9.8703 -2.1518 31 1 6.3033 -10.6542 -0.0244 32 1 3.4325 -8.3398 2.1226 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000244018292.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:19 Heat of formation + Delta-G solvation = 23.604839 kcal Electronic energy + Delta-G solvation = -16542.996275 eV Core-core repulsion = 13655.003922 eV Total energy + Delta-G solvation = -2887.992353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.95784 -38.17987 -36.82994 -35.19225 -32.87079 -31.62347 -31.10813 -27.83003 -25.95491 -23.14601 -23.07965 -22.67146 -21.73128 -18.41998 -17.46096 -16.51606 -16.13802 -16.08455 -15.66550 -14.80767 -14.60378 -14.49840 -14.12651 -13.86855 -13.42171 -13.24531 -12.98435 -12.19314 -11.90906 -11.85962 -11.79365 -11.20685 -11.18265 -10.99749 -10.75302 -10.47462 -10.35937 -9.55148 -9.40989 -9.11676 -8.88143 -8.26363 -7.19834 -6.73783 -6.23799 -4.34075 0.68097 0.81102 1.76035 2.09801 2.61460 3.03843 3.18599 3.25563 3.28071 3.47888 4.18037 4.23539 4.37417 4.41210 4.65160 4.83591 4.92733 5.11252 5.11617 5.37932 5.51680 5.72645 5.79294 5.90200 6.12792 6.34336 6.41331 6.67160 7.32884 7.40455 7.40939 7.64036 7.84496 8.21264 8.70834 9.31606 10.84837 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.024028 B = 0.003083 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.025616 B = 9080.576319 C = 9515.011160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.069 3.931 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.556 4.556 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.651 5.651 11 C 0.555 3.445 12 S -0.671 6.671 13 N -0.702 5.702 14 C 0.173 3.827 15 C -0.094 4.094 16 C -0.094 4.094 17 C -0.110 4.110 18 C -0.105 4.105 19 C -0.038 4.038 20 Cl -0.070 7.070 21 C -0.090 4.090 22 H 0.268 0.732 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.389 0.611 26 H 0.392 0.608 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.709 -19.639 -0.293 23.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.136 4.136 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.595 4.595 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.274 5.274 11 C 0.192 3.808 12 S -0.547 6.547 13 N -0.336 5.336 14 C 0.050 3.950 15 C -0.095 4.095 16 C -0.113 4.113 17 C -0.128 4.128 18 C -0.124 4.124 19 C -0.065 4.065 20 Cl -0.041 7.041 21 C -0.109 4.109 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.224 0.776 26 H 0.228 0.772 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 12.321 -19.684 -0.150 23.223 hybrid contribution 2.280 1.158 0.159 2.562 sum 14.602 -18.526 0.008 23.588 Atomic orbital electron populations 1.69997 1.05981 1.27442 1.47682 1.24905 0.94935 0.99352 0.94435 0.86345 0.79680 0.82870 0.77920 1.19746 1.20641 1.20638 1.21184 0.93177 0.90310 1.54808 0.92014 1.19656 0.87460 0.79554 1.00219 1.45995 1.11711 1.04178 1.65497 1.22159 0.94850 0.82315 0.81451 1.93252 0.94441 1.91233 1.75792 1.44842 1.07919 1.04999 1.75845 1.20362 0.92415 0.76661 1.05605 1.19975 0.97720 0.99108 0.92735 1.21314 0.95512 0.96341 0.98093 1.21155 0.96310 0.97523 0.97801 1.21130 1.00304 1.00155 0.90811 1.20935 0.97660 1.00395 0.87464 1.98385 1.84530 1.88685 1.32485 1.21088 0.94632 0.96109 0.99089 0.92242 0.93178 0.93174 0.77607 0.77236 0.88904 0.88762 0.84840 0.84781 0.84877 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.17 13.29 55.43 0.74 -24.44 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.56 -14.51 9.28 -34.44 -0.32 -14.83 16 8 H 0.06 1.51 7.60 -52.49 -0.40 1.11 16 9 C 0.25 6.31 4.88 -5.19 -0.03 6.29 16 10 N -0.65 -12.73 5.55 -63.21 -0.35 -13.08 16 11 C 0.55 10.25 7.98 -86.92 -0.69 9.55 16 12 S -0.67 -15.42 27.77 -107.50 -2.99 -18.41 16 13 N -0.70 -9.22 5.55 -63.22 -0.35 -9.57 16 14 C 0.17 2.01 5.25 -5.19 -0.03 1.98 16 15 C -0.09 -0.87 5.25 -104.63 -0.55 -1.42 16 16 C -0.09 -0.75 9.70 -39.58 -0.38 -1.13 16 17 C -0.11 -0.76 10.05 -39.59 -0.40 -1.15 16 18 C -0.11 -0.78 9.83 -39.55 -0.39 -1.17 16 19 C -0.04 -0.33 6.32 -39.50 -0.25 -0.58 16 20 Cl -0.07 -0.61 28.96 -51.86 -1.50 -2.11 16 21 C -0.09 -0.83 9.49 -39.55 -0.38 -1.20 16 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.05 1.41 7.99 -51.93 -0.42 1.00 16 24 H 0.05 1.42 7.99 -51.93 -0.41 1.00 16 25 H 0.39 6.42 8.34 -40.82 -0.34 6.08 16 26 H 0.39 4.16 8.48 -40.82 -0.35 3.82 16 27 H 0.09 1.18 7.94 -51.93 -0.41 0.77 16 28 H 0.09 1.17 7.93 -51.93 -0.41 0.76 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 312.26 15.07 4.71 4.71 Total: -1.00 -31.70 312.26 -11.84 -43.54 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -3.57 Total: 5.95 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -3.51 Total: -1.90 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.03 Total: -47.09 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: -15.42 SS G_CDS: -2.99 Total: -18.41 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.50 Total: -2.11 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.70 -11.84 -43.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000244018292.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.147 kcal (2) G-P(sol) polarization free energy of solvation -31.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds