Wall clock time and date at job start Tue Mar 31 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31257 * 1 3 3 Si 1.86802 * 120.00294 * 2 1 4 4 H 1.48500 * 109.47099 * 275.09150 * 3 2 1 5 5 H 1.48496 * 109.47219 * 35.09425 * 3 2 1 6 6 H 1.48504 * 109.46903 * 155.09592 * 3 2 1 7 7 C 1.39073 * 119.99878 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00007 * 340.41311 * 7 2 1 9 9 N 1.37107 * 120.00181 * 160.41465 * 7 2 1 10 10 C 1.36227 * 119.71620 * 331.47451 * 9 7 2 11 11 N 1.29829 * 123.31231 * 180.02562 * 10 9 7 12 12 C 1.35637 * 121.62321 * 359.97438 * 11 10 9 13 13 C 1.41354 * 119.04032 * 0.02562 * 12 11 10 14 14 C 1.39322 * 120.06272 * 180.02562 * 13 12 11 15 15 C 1.37836 * 119.51718 * 0.02562 * 14 13 12 16 16 C 1.38829 * 120.57205 * 0.02562 * 15 14 13 17 17 C 1.37753 * 120.82477 * 0.25888 * 16 15 14 18 18 C 1.50704 * 120.15643 * 179.72593 * 17 16 15 19 19 F 1.39903 * 109.46554 * 359.97438 * 18 17 16 20 20 F 1.39900 * 109.47143 * 119.99579 * 18 17 16 21 21 F 1.39894 * 109.46960 * 239.99726 * 18 17 16 22 22 C 1.35349 * 119.71259 * 151.47163 * 9 7 2 23 23 O 1.21722 * 121.28818 * 359.97438 * 22 9 7 24 24 H 0.97003 * 119.99564 * 359.97438 * 1 2 3 25 25 H 1.08004 * 118.34865 * 0.02562 * 10 9 7 26 26 H 1.07998 * 120.24093 * 180.02562 * 14 13 12 27 27 H 1.08006 * 119.71800 * 179.97438 * 15 14 13 28 28 H 1.07997 * 119.58884 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3126 0.0000 0.0000 3 14 2.2467 1.6177 0.0000 4 1 2.3866 2.1085 -1.3946 5 1 1.5022 2.6192 0.8049 6 1 3.5939 1.4113 0.5896 7 6 2.0079 -1.2044 -0.0005 8 1 1.5148 -2.1128 0.3126 9 7 3.3195 -1.2387 -0.3986 10 6 3.7755 -0.3254 -1.3007 11 7 5.0018 -0.2941 -1.7259 12 6 5.9280 -1.1847 -1.2916 13 6 5.5452 -2.1704 -0.3535 14 6 6.4795 -3.0955 0.1073 15 6 7.7758 -3.0408 -0.3578 16 6 8.1555 -2.0734 -1.2784 17 6 7.2487 -1.1459 -1.7422 18 6 7.6786 -0.0985 -2.7368 19 9 9.0346 -0.2686 -3.0362 20 9 6.9224 -0.2280 -3.9067 21 9 7.4781 1.1736 -2.1904 22 6 4.1500 -2.1795 0.1083 23 8 3.7566 -3.0014 0.9154 24 1 -0.4849 0.8401 0.0004 25 1 3.0819 0.4096 -1.6816 26 1 6.1901 -3.8501 0.8237 27 1 8.5029 -3.7561 -0.0024 28 1 9.1756 -2.0448 -1.6319 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062919.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:33 Heat of formation + Delta-G solvation = -130.004030 kcal Electronic energy + Delta-G solvation = -22338.412328 eV Core-core repulsion = 18325.749138 eV Total energy + Delta-G solvation = -4012.663190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 284.051 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.71174 -47.28984 -47.08599 -41.01177 -38.23101 -36.80598 -34.37622 -32.56519 -31.73443 -29.74473 -26.38832 -25.76767 -24.20929 -23.04012 -21.20384 -19.50215 -18.58741 -18.13558 -18.02138 -17.56785 -16.97955 -16.18061 -15.28108 -15.14719 -14.67328 -14.46491 -14.06957 -13.93671 -13.81074 -13.61870 -13.49114 -13.31170 -13.29174 -13.10330 -12.69370 -12.55114 -12.19130 -11.74497 -11.45312 -11.27199 -11.15163 -10.45173 -10.17310 -9.51103 -9.34461 -9.18171 -8.99835 -7.73259 -7.21630 -4.78413 0.82284 1.02458 2.59513 2.72145 2.89050 2.91229 3.07792 3.13444 3.49097 3.56500 4.09846 4.10815 4.43642 4.56888 4.59044 4.89049 4.92895 5.11305 5.26505 5.42530 5.60915 5.83090 5.91477 6.20043 6.42571 6.51251 6.71692 6.87221 7.20596 7.61823 7.96775 8.17321 8.61792 8.73956 9.83682 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.007325 C = 0.005781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.373099 B = 3821.835788 C = 4842.234325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.071 3.929 3 Si 0.868 3.132 4 H -0.253 1.253 5 H -0.267 1.267 6 H -0.251 1.251 7 C -0.333 4.333 8 H 0.137 0.863 9 N -0.359 5.359 10 C 0.310 3.690 11 N -0.558 5.558 12 C 0.208 3.792 13 C -0.220 4.220 14 C 0.001 3.999 15 C -0.182 4.182 16 C -0.027 4.027 17 C -0.206 4.206 18 C 0.524 3.476 19 F -0.190 7.190 20 F -0.173 7.173 21 F -0.174 7.174 22 C 0.511 3.489 23 O -0.522 6.522 24 H 0.294 0.706 25 H 0.186 0.814 26 H 0.137 0.863 27 H 0.133 0.867 28 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.836 0.304 -3.320 12.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.145 4.145 3 Si 0.691 3.309 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.462 4.462 8 H 0.154 0.846 9 N -0.059 5.059 10 C 0.031 3.969 11 N -0.284 5.284 12 C 0.088 3.912 13 C -0.228 4.228 14 C -0.018 4.018 15 C -0.201 4.201 16 C -0.047 4.047 17 C -0.210 4.210 18 C 0.470 3.530 19 F -0.171 7.171 20 F -0.154 7.154 21 F -0.155 7.155 22 C 0.308 3.692 23 O -0.399 6.399 24 H 0.105 0.895 25 H 0.202 0.798 26 H 0.155 0.845 27 H 0.151 0.849 28 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.571 0.418 -3.319 12.045 hybrid contribution -0.033 0.546 0.458 0.713 sum 11.538 0.964 -2.861 11.926 Atomic orbital electron populations 1.69600 1.06430 1.30323 1.36682 1.25493 0.95696 0.99171 0.94110 0.86953 0.81333 0.82225 0.80348 1.17825 1.19220 1.17480 1.19812 0.82299 0.99102 1.44974 0.84606 1.42937 1.11521 1.22977 1.28446 1.24543 0.93024 0.92524 0.86789 1.68588 1.00629 1.28162 1.31050 1.18198 0.91820 0.90128 0.91088 1.20497 0.95283 1.02121 1.04901 1.21134 0.91729 0.94480 0.94456 1.20851 0.96337 1.01400 1.01539 1.20945 0.98590 0.91611 0.93527 1.19406 0.94421 1.01588 1.05610 1.17903 0.73562 0.81167 0.80344 1.93106 1.34512 1.95493 1.94018 1.93197 1.76046 1.95839 1.50306 1.93193 1.94657 1.42074 1.85589 1.18291 0.84983 0.83417 0.82517 1.90742 1.77492 1.38188 1.33459 0.89490 0.79799 0.84545 0.84943 0.84596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.55 13.95 55.50 0.77 -18.77 15 2 C 0.07 1.69 5.30 -17.49 -0.09 1.60 15 3 Si 0.87 17.84 24.62 -169.99 -4.19 13.65 15 4 H -0.25 -4.82 6.70 56.52 0.38 -4.44 15 5 H -0.27 -5.32 7.11 56.52 0.40 -4.92 15 6 H -0.25 -5.44 6.90 56.52 0.39 -5.05 15 7 C -0.33 -8.40 9.58 -14.88 -0.14 -8.54 15 8 H 0.14 3.73 7.76 -52.48 -0.41 3.33 15 9 N -0.36 -8.54 2.57 -63.83 -0.16 -8.70 15 10 C 0.31 6.82 8.63 -89.84 -0.78 6.05 15 11 N -0.56 -12.00 9.36 -11.91 -0.11 -12.11 15 12 C 0.21 4.23 6.51 -84.49 -0.55 3.68 15 13 C -0.22 -4.50 5.89 -104.77 -0.62 -5.12 15 14 C 0.00 0.02 9.68 -39.33 -0.38 -0.36 15 15 C -0.18 -2.45 10.02 -39.51 -0.40 -2.85 15 16 C -0.03 -0.38 9.41 -39.54 -0.37 -0.75 15 17 C -0.21 -3.58 5.39 -104.29 -0.56 -4.14 15 18 C 0.52 8.80 3.00 36.01 0.11 8.90 15 19 F -0.19 -2.75 15.97 2.25 0.04 -2.71 15 20 F -0.17 -3.06 16.97 2.25 0.04 -3.02 15 21 F -0.17 -3.11 17.00 2.25 0.04 -3.07 15 22 C 0.51 12.08 7.61 -12.47 -0.09 11.99 15 23 O -0.52 -13.29 16.49 5.17 0.09 -13.20 15 24 H 0.29 6.43 8.31 -40.82 -0.34 6.10 15 25 H 0.19 3.80 4.32 -52.48 -0.23 3.58 15 26 H 0.14 2.11 7.83 -52.49 -0.41 1.69 15 27 H 0.13 1.31 8.06 -52.48 -0.42 0.88 15 28 H 0.14 1.50 7.13 -52.49 -0.37 1.12 15 LS Contribution 262.07 15.07 3.95 3.95 Total: -1.00 -26.82 262.07 -4.43 -31.25 By element: Atomic # 1 Polarization: 3.30 SS G_CDS: -1.01 Total: 2.29 kcal Atomic # 6 Polarization: 14.33 SS G_CDS: -3.88 Total: 10.45 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.50 Total: -39.58 kcal Atomic # 8 Polarization: -13.29 SS G_CDS: 0.09 Total: -13.20 kcal Atomic # 9 Polarization: -8.91 SS G_CDS: 0.11 Total: -8.80 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -4.19 Total: 13.65 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -26.82 -4.43 -31.25 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062919.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.756 kcal (2) G-P(sol) polarization free energy of solvation -26.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds